Experiment: LB control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_219 and PfGW456L13_220 are separated by 243 nucleotides PfGW456L13_220 and PfGW456L13_221 are separated by 427 nucleotides
PfGW456L13_219 - Protein involved in catabolism of external DNA, at 256,789 to 257,628
_219
PfGW456L13_220 - hypothetical protein, at 257,872 to 258,108
_220
PfGW456L13_221 - Proline/sodium symporter PutP (TC 2.A.21.2.1) @ Propionate/sodium symporter, at 258,536 to 260,020
_221
Position (kb) 257
258
259 Strain fitness (log2 ratio) -2
-1
0
1
2 at 257.009 kb on + strand, within PfGW456L13_219 at 257.010 kb on - strand, within PfGW456L13_219 at 257.010 kb on - strand, within PfGW456L13_219 at 257.346 kb on - strand, within PfGW456L13_219 at 257.390 kb on + strand, within PfGW456L13_219 at 257.390 kb on + strand, within PfGW456L13_219 at 257.390 kb on + strand, within PfGW456L13_219 at 257.390 kb on + strand, within PfGW456L13_219 at 257.390 kb on + strand, within PfGW456L13_219 at 257.390 kb on + strand, within PfGW456L13_219 at 257.390 kb on + strand, within PfGW456L13_219 at 257.390 kb on + strand, within PfGW456L13_219 at 257.390 kb on + strand, within PfGW456L13_219 at 257.390 kb on + strand, within PfGW456L13_219 at 257.391 kb on - strand, within PfGW456L13_219 at 257.391 kb on - strand, within PfGW456L13_219 at 257.391 kb on - strand, within PfGW456L13_219 at 257.391 kb on - strand, within PfGW456L13_219 at 257.391 kb on - strand, within PfGW456L13_219 at 257.450 kb on + strand, within PfGW456L13_219 at 257.450 kb on + strand, within PfGW456L13_219 at 257.451 kb on - strand, within PfGW456L13_219 at 257.451 kb on - strand, within PfGW456L13_219 at 257.489 kb on + strand, within PfGW456L13_219 at 257.489 kb on + strand, within PfGW456L13_219 at 257.490 kb on - strand, within PfGW456L13_219 at 257.490 kb on - strand, within PfGW456L13_219 at 257.490 kb on - strand, within PfGW456L13_219 at 257.621 kb on + strand at 257.894 kb on - strand at 257.894 kb on - strand at 257.940 kb on + strand, within PfGW456L13_220 at 257.940 kb on + strand, within PfGW456L13_220 at 257.940 kb on + strand, within PfGW456L13_220 at 257.940 kb on + strand, within PfGW456L13_220 at 257.941 kb on - strand, within PfGW456L13_220 at 257.941 kb on - strand, within PfGW456L13_220 at 257.941 kb on - strand, within PfGW456L13_220 at 257.941 kb on - strand, within PfGW456L13_220 at 257.941 kb on - strand, within PfGW456L13_220 at 258.019 kb on - strand, within PfGW456L13_220 at 258.019 kb on - strand, within PfGW456L13_220 at 258.113 kb on + strand at 258.113 kb on + strand at 258.123 kb on + strand at 258.123 kb on + strand at 258.151 kb on - strand at 258.151 kb on - strand at 258.187 kb on - strand at 258.317 kb on + strand at 258.317 kb on + strand at 258.318 kb on - strand at 258.318 kb on - strand at 258.318 kb on - strand at 258.481 kb on + strand at 258.482 kb on - strand at 258.552 kb on + strand at 258.621 kb on + strand at 258.622 kb on - strand at 258.622 kb on - strand at 258.932 kb on - strand, within PfGW456L13_221 at 258.948 kb on + strand, within PfGW456L13_221 at 258.948 kb on + strand, within PfGW456L13_221 at 258.948 kb on + strand, within PfGW456L13_221 at 258.948 kb on + strand, within PfGW456L13_221 at 258.949 kb on - strand, within PfGW456L13_221 at 258.949 kb on - strand, within PfGW456L13_221 at 258.949 kb on - strand, within PfGW456L13_221
Per-strain Table
Position Strand Gene LocusTag Fraction LB control remove 257,009 + PfGW456L13_219 0.26 +1.5 257,010 - PfGW456L13_219 0.26 +1.8 257,010 - PfGW456L13_219 0.26 +0.8 257,346 - PfGW456L13_219 0.66 +0.0 257,390 + PfGW456L13_219 0.72 +1.2 257,390 + PfGW456L13_219 0.72 -0.9 257,390 + PfGW456L13_219 0.72 +0.4 257,390 + PfGW456L13_219 0.72 -0.6 257,390 + PfGW456L13_219 0.72 -0.1 257,390 + PfGW456L13_219 0.72 +0.1 257,390 + PfGW456L13_219 0.72 -0.6 257,390 + PfGW456L13_219 0.72 +0.7 257,390 + PfGW456L13_219 0.72 +0.5 257,390 + PfGW456L13_219 0.72 -0.4 257,391 - PfGW456L13_219 0.72 -0.8 257,391 - PfGW456L13_219 0.72 -0.0 257,391 - PfGW456L13_219 0.72 +0.7 257,391 - PfGW456L13_219 0.72 -0.1 257,391 - PfGW456L13_219 0.72 -0.1 257,450 + PfGW456L13_219 0.79 -0.9 257,450 + PfGW456L13_219 0.79 -0.5 257,451 - PfGW456L13_219 0.79 +0.7 257,451 - PfGW456L13_219 0.79 -0.1 257,489 + PfGW456L13_219 0.83 -0.2 257,489 + PfGW456L13_219 0.83 -2.1 257,490 - PfGW456L13_219 0.83 +0.5 257,490 - PfGW456L13_219 0.83 +1.6 257,490 - PfGW456L13_219 0.83 -0.6 257,621 + -0.5 257,894 - -0.8 257,894 - +0.9 257,940 + PfGW456L13_220 0.29 -0.5 257,940 + PfGW456L13_220 0.29 -1.7 257,940 + PfGW456L13_220 0.29 -0.1 257,940 + PfGW456L13_220 0.29 -0.8 257,941 - PfGW456L13_220 0.29 +0.2 257,941 - PfGW456L13_220 0.29 -0.9 257,941 - PfGW456L13_220 0.29 -0.1 257,941 - PfGW456L13_220 0.29 +0.4 257,941 - PfGW456L13_220 0.29 -0.4 258,019 - PfGW456L13_220 0.62 -0.6 258,019 - PfGW456L13_220 0.62 +1.2 258,113 + -0.1 258,113 + -0.3 258,123 + +0.1 258,123 + +0.7 258,151 - -0.4 258,151 - +0.5 258,187 - -0.4 258,317 + -0.6 258,317 + +0.5 258,318 - -1.0 258,318 - -0.6 258,318 - -0.7 258,481 + +0.5 258,482 - +0.6 258,552 + -1.6 258,621 + -0.6 258,622 - +0.1 258,622 - -0.9 258,932 - PfGW456L13_221 0.27 +0.6 258,948 + PfGW456L13_221 0.28 +0.2 258,948 + PfGW456L13_221 0.28 -0.1 258,948 + PfGW456L13_221 0.28 -1.1 258,948 + PfGW456L13_221 0.28 -0.2 258,949 - PfGW456L13_221 0.28 +0.1 258,949 - PfGW456L13_221 0.28 +0.2 258,949 - PfGW456L13_221 0.28 +0.1
Or see this region's nucleotide sequence