Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_191

Experiment: LB control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_190 and PfGW456L13_191 are separated by 103 nucleotidesPfGW456L13_191 and PfGW456L13_192 are separated by 201 nucleotides PfGW456L13_190 - LysR family transcriptional regulator PA4989, at 216,661 to 217,563 _190 PfGW456L13_191 - Ethidium bromide-methyl viologen resistance protein EmrE, at 217,667 to 217,999 _191 PfGW456L13_192 - Oxidoreductase, FAD-binding, at 218,201 to 219,376 _192 Position (kb) 217 218Strain fitness (log2 ratio) -2 -1 0 1 2 3at 216.754 kb on + strand, within PfGW456L13_190at 216.755 kb on - strand, within PfGW456L13_190at 216.818 kb on + strand, within PfGW456L13_190at 216.893 kb on + strand, within PfGW456L13_190at 216.893 kb on + strand, within PfGW456L13_190at 216.893 kb on + strand, within PfGW456L13_190at 216.893 kb on + strand, within PfGW456L13_190at 216.893 kb on + strand, within PfGW456L13_190at 216.893 kb on + strand, within PfGW456L13_190at 216.893 kb on + strand, within PfGW456L13_190at 216.893 kb on + strand, within PfGW456L13_190at 216.893 kb on + strand, within PfGW456L13_190at 216.894 kb on - strand, within PfGW456L13_190at 216.894 kb on - strand, within PfGW456L13_190at 216.894 kb on - strand, within PfGW456L13_190at 216.894 kb on - strand, within PfGW456L13_190at 216.894 kb on - strand, within PfGW456L13_190at 216.894 kb on - strand, within PfGW456L13_190at 216.894 kb on - strand, within PfGW456L13_190at 216.894 kb on - strand, within PfGW456L13_190at 216.894 kb on - strand, within PfGW456L13_190at 216.894 kb on - strand, within PfGW456L13_190at 216.894 kb on - strand, within PfGW456L13_190at 216.894 kb on - strand, within PfGW456L13_190at 216.894 kb on - strand, within PfGW456L13_190at 216.895 kb on + strand, within PfGW456L13_190at 216.944 kb on + strand, within PfGW456L13_190at 216.944 kb on + strand, within PfGW456L13_190at 216.944 kb on + strand, within PfGW456L13_190at 217.241 kb on + strand, within PfGW456L13_190at 217.593 kb on - strandat 217.621 kb on + strandat 217.621 kb on + strandat 217.621 kb on + strandat 217.621 kb on + strandat 217.622 kb on - strandat 217.622 kb on - strandat 217.622 kb on - strandat 217.622 kb on - strandat 217.676 kb on + strandat 217.677 kb on - strandat 217.677 kb on - strandat 217.677 kb on - strandat 217.677 kb on - strandat 217.679 kb on + strandat 217.679 kb on + strandat 217.679 kb on + strandat 217.679 kb on + strandat 217.679 kb on + strandat 217.679 kb on + strandat 217.679 kb on + strandat 217.679 kb on + strandat 217.679 kb on + strandat 217.680 kb on - strandat 217.680 kb on - strandat 217.680 kb on - strandat 217.680 kb on - strandat 217.680 kb on - strandat 217.680 kb on - strandat 217.680 kb on - strandat 217.680 kb on - strandat 217.680 kb on - strandat 217.682 kb on + strandat 217.682 kb on + strandat 217.683 kb on - strandat 217.683 kb on - strandat 217.683 kb on - strandat 217.683 kb on - strandat 217.683 kb on - strandat 217.897 kb on + strand, within PfGW456L13_191at 217.898 kb on - strand, within PfGW456L13_191at 217.898 kb on - strand, within PfGW456L13_191at 217.898 kb on - strand, within PfGW456L13_191at 217.898 kb on - strand, within PfGW456L13_191at 217.898 kb on - strand, within PfGW456L13_191at 217.898 kb on - strand, within PfGW456L13_191at 217.901 kb on + strand, within PfGW456L13_191at 217.901 kb on + strand, within PfGW456L13_191at 217.901 kb on + strand, within PfGW456L13_191at 217.902 kb on - strand, within PfGW456L13_191at 217.902 kb on - strand, within PfGW456L13_191at 217.902 kb on - strand, within PfGW456L13_191at 217.902 kb on - strand, within PfGW456L13_191at 217.902 kb on - strand, within PfGW456L13_191at 217.902 kb on - strand, within PfGW456L13_191at 217.997 kb on + strandat 217.998 kb on - strandat 218.113 kb on + strandat 218.114 kb on - strandat 218.114 kb on - strandat 218.132 kb on - strandat 218.164 kb on + strandat 218.164 kb on + strandat 218.165 kb on - strandat 218.165 kb on - strandat 218.165 kb on - strandat 218.165 kb on - strandat 218.166 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB control
remove
216,754 + PfGW456L13_190 0.10 +0.9
216,755 - PfGW456L13_190 0.10 -0.1
216,818 + PfGW456L13_190 0.17 +0.1
216,893 + PfGW456L13_190 0.26 +0.1
216,893 + PfGW456L13_190 0.26 -1.6
216,893 + PfGW456L13_190 0.26 -0.3
216,893 + PfGW456L13_190 0.26 -0.2
216,893 + PfGW456L13_190 0.26 +0.2
216,893 + PfGW456L13_190 0.26 -0.9
216,893 + PfGW456L13_190 0.26 -1.6
216,893 + PfGW456L13_190 0.26 -0.5
216,893 + PfGW456L13_190 0.26 -0.8
216,894 - PfGW456L13_190 0.26 +0.1
216,894 - PfGW456L13_190 0.26 -0.0
216,894 - PfGW456L13_190 0.26 -0.5
216,894 - PfGW456L13_190 0.26 -0.4
216,894 - PfGW456L13_190 0.26 +0.4
216,894 - PfGW456L13_190 0.26 -0.3
216,894 - PfGW456L13_190 0.26 -0.3
216,894 - PfGW456L13_190 0.26 +0.4
216,894 - PfGW456L13_190 0.26 -0.9
216,894 - PfGW456L13_190 0.26 -0.6
216,894 - PfGW456L13_190 0.26 -0.2
216,894 - PfGW456L13_190 0.26 +0.8
216,894 - PfGW456L13_190 0.26 -0.2
216,895 + PfGW456L13_190 0.26 -0.4
216,944 + PfGW456L13_190 0.31 -0.2
216,944 + PfGW456L13_190 0.31 +0.7
216,944 + PfGW456L13_190 0.31 -0.5
217,241 + PfGW456L13_190 0.64 -0.5
217,593 - +0.4
217,621 + +1.3
217,621 + +2.9
217,621 + -1.0
217,621 + -0.5
217,622 - -0.1
217,622 - -1.2
217,622 - -0.6
217,622 - -0.6
217,676 + +0.2
217,677 - +0.4
217,677 - -0.8
217,677 - -0.7
217,677 - -0.1
217,679 + +0.8
217,679 + -0.9
217,679 + -0.2
217,679 + -0.0
217,679 + -0.4
217,679 + +0.6
217,679 + -1.0
217,679 + +0.6
217,679 + -1.0
217,680 - -0.3
217,680 - -0.6
217,680 - -0.9
217,680 - -0.4
217,680 - +0.7
217,680 - +0.7
217,680 - +0.8
217,680 - +0.7
217,680 - -0.4
217,682 + -0.1
217,682 + +0.1
217,683 - +0.0
217,683 - -0.6
217,683 - -0.4
217,683 - -0.6
217,683 - -1.4
217,897 + PfGW456L13_191 0.69 +0.3
217,898 - PfGW456L13_191 0.69 -0.3
217,898 - PfGW456L13_191 0.69 +0.8
217,898 - PfGW456L13_191 0.69 +0.7
217,898 - PfGW456L13_191 0.69 +0.6
217,898 - PfGW456L13_191 0.69 +2.0
217,898 - PfGW456L13_191 0.69 -0.2
217,901 + PfGW456L13_191 0.70 -0.2
217,901 + PfGW456L13_191 0.70 +0.9
217,901 + PfGW456L13_191 0.70 -0.1
217,902 - PfGW456L13_191 0.71 -0.3
217,902 - PfGW456L13_191 0.71 +0.1
217,902 - PfGW456L13_191 0.71 +0.9
217,902 - PfGW456L13_191 0.71 -0.2
217,902 - PfGW456L13_191 0.71 +0.3
217,902 - PfGW456L13_191 0.71 +0.6
217,997 + +0.7
217,998 - -0.6
218,113 + -0.2
218,114 - -0.3
218,114 - -1.0
218,132 - +0.3
218,164 + +0.4
218,164 + -0.2
218,165 - -2.1
218,165 - +0.5
218,165 - -0.2
218,165 - -0.5
218,166 + +1.2

Or see this region's nucleotide sequence