Experiment: KB with Avocadyne 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4256 and Psyr_4257 are separated by 108 nucleotides Psyr_4257 and Psyr_4258 are separated by 120 nucleotides Psyr_4258 and Psyr_4259 are separated by 168 nucleotides
Psyr_4256: Psyr_4256 - conserved hypothetical protein, at 5,073,656 to 5,073,964
_4256
Psyr_4257: Psyr_4257 - Uncharacterized protein UPF0114, at 5,074,073 to 5,074,561
_4257
Psyr_4258: Psyr_4258 - conserved hypothetical protein, at 5,074,682 to 5,075,011
_4258
Psyr_4259: Psyr_4259 - ATP-dependent protease, putative, at 5,075,180 to 5,077,615
_4259
Position (kb) 5074
5075
5076 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5073.756 kb on + strand, within Psyr_4256 at 5073.757 kb on - strand, within Psyr_4256 at 5073.773 kb on + strand, within Psyr_4256 at 5073.773 kb on + strand, within Psyr_4256 at 5073.882 kb on + strand, within Psyr_4256 at 5073.882 kb on + strand, within Psyr_4256 at 5073.882 kb on + strand, within Psyr_4256 at 5073.882 kb on + strand, within Psyr_4256 at 5073.882 kb on + strand, within Psyr_4256 at 5073.882 kb on + strand, within Psyr_4256 at 5073.882 kb on + strand, within Psyr_4256 at 5073.882 kb on + strand, within Psyr_4256 at 5073.882 kb on + strand, within Psyr_4256 at 5073.883 kb on - strand, within Psyr_4256 at 5073.883 kb on - strand, within Psyr_4256 at 5073.883 kb on - strand, within Psyr_4256 at 5073.883 kb on - strand, within Psyr_4256 at 5073.883 kb on - strand, within Psyr_4256 at 5073.883 kb on - strand, within Psyr_4256 at 5073.883 kb on - strand, within Psyr_4256 at 5073.883 kb on - strand, within Psyr_4256 at 5073.883 kb on - strand, within Psyr_4256 at 5073.883 kb on - strand, within Psyr_4256 at 5073.883 kb on - strand, within Psyr_4256 at 5073.957 kb on + strand at 5074.011 kb on + strand at 5074.011 kb on + strand at 5074.012 kb on - strand at 5074.012 kb on - strand at 5074.012 kb on - strand at 5074.098 kb on + strand at 5074.146 kb on + strand, within Psyr_4257 at 5074.146 kb on + strand, within Psyr_4257 at 5074.146 kb on + strand, within Psyr_4257 at 5074.146 kb on + strand, within Psyr_4257 at 5074.146 kb on + strand, within Psyr_4257 at 5074.147 kb on - strand, within Psyr_4257 at 5074.147 kb on - strand, within Psyr_4257 at 5074.158 kb on + strand, within Psyr_4257 at 5074.265 kb on - strand, within Psyr_4257 at 5074.265 kb on - strand, within Psyr_4257 at 5074.503 kb on + strand, within Psyr_4257 at 5074.503 kb on + strand, within Psyr_4257 at 5074.504 kb on - strand, within Psyr_4257 at 5074.504 kb on - strand, within Psyr_4257 at 5074.533 kb on + strand at 5074.533 kb on + strand at 5074.533 kb on + strand at 5074.533 kb on + strand at 5074.533 kb on + strand at 5074.533 kb on + strand at 5074.533 kb on + strand at 5074.533 kb on + strand at 5074.533 kb on + strand at 5074.534 kb on - strand at 5074.534 kb on - strand at 5074.534 kb on - strand at 5074.534 kb on - strand at 5074.534 kb on - strand at 5074.534 kb on - strand at 5074.534 kb on - strand at 5074.534 kb on - strand at 5074.534 kb on - strand at 5074.534 kb on - strand at 5074.534 kb on - strand at 5074.534 kb on - strand at 5074.534 kb on - strand at 5074.534 kb on - strand at 5074.565 kb on + strand at 5074.566 kb on - strand at 5074.597 kb on + strand at 5074.597 kb on + strand at 5074.597 kb on + strand at 5074.597 kb on + strand at 5074.597 kb on + strand at 5074.598 kb on - strand at 5074.598 kb on - strand at 5074.598 kb on - strand at 5074.598 kb on - strand at 5074.598 kb on - strand at 5074.598 kb on - strand at 5074.598 kb on - strand at 5074.600 kb on - strand at 5074.683 kb on + strand at 5074.684 kb on - strand at 5074.745 kb on + strand, within Psyr_4258 at 5074.745 kb on + strand, within Psyr_4258 at 5074.745 kb on + strand, within Psyr_4258 at 5074.745 kb on + strand, within Psyr_4258 at 5074.745 kb on + strand, within Psyr_4258 at 5074.745 kb on + strand, within Psyr_4258 at 5074.745 kb on + strand, within Psyr_4258 at 5074.745 kb on + strand, within Psyr_4258 at 5074.746 kb on - strand, within Psyr_4258 at 5074.746 kb on - strand, within Psyr_4258 at 5074.746 kb on - strand, within Psyr_4258 at 5074.746 kb on - strand, within Psyr_4258 at 5074.746 kb on - strand, within Psyr_4258 at 5074.746 kb on - strand, within Psyr_4258 at 5074.746 kb on - strand, within Psyr_4258 at 5074.746 kb on - strand, within Psyr_4258 at 5074.762 kb on + strand, within Psyr_4258 at 5074.762 kb on + strand, within Psyr_4258 at 5074.763 kb on - strand, within Psyr_4258 at 5074.763 kb on - strand, within Psyr_4258 at 5074.810 kb on + strand, within Psyr_4258 at 5075.035 kb on + strand at 5075.035 kb on + strand at 5075.035 kb on + strand at 5075.036 kb on - strand at 5075.036 kb on - strand at 5075.036 kb on - strand at 5075.381 kb on + strand at 5075.381 kb on + strand at 5075.382 kb on - strand at 5075.382 kb on - strand at 5075.382 kb on - strand at 5075.388 kb on + strand at 5075.388 kb on + strand at 5075.388 kb on + strand at 5075.389 kb on - strand at 5075.389 kb on - strand at 5075.389 kb on - strand at 5075.420 kb on + strand at 5075.674 kb on - strand, within Psyr_4259 at 5075.679 kb on + strand, within Psyr_4259 at 5075.680 kb on - strand, within Psyr_4259
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Avocadyne 10 mM remove 5,073,756 + Psyr_4256 0.32 +0.5 5,073,757 - Psyr_4256 0.33 -0.8 5,073,773 + Psyr_4256 0.38 +0.5 5,073,773 + Psyr_4256 0.38 +0.2 5,073,882 + Psyr_4256 0.73 -1.1 5,073,882 + Psyr_4256 0.73 -0.4 5,073,882 + Psyr_4256 0.73 +3.9 5,073,882 + Psyr_4256 0.73 -1.2 5,073,882 + Psyr_4256 0.73 -0.1 5,073,882 + Psyr_4256 0.73 -1.7 5,073,882 + Psyr_4256 0.73 +0.8 5,073,882 + Psyr_4256 0.73 +1.2 5,073,882 + Psyr_4256 0.73 -2.3 5,073,883 - Psyr_4256 0.73 -1.1 5,073,883 - Psyr_4256 0.73 +0.3 5,073,883 - Psyr_4256 0.73 -0.4 5,073,883 - Psyr_4256 0.73 -0.4 5,073,883 - Psyr_4256 0.73 -0.4 5,073,883 - Psyr_4256 0.73 +0.5 5,073,883 - Psyr_4256 0.73 +0.9 5,073,883 - Psyr_4256 0.73 -1.9 5,073,883 - Psyr_4256 0.73 +0.3 5,073,883 - Psyr_4256 0.73 +0.8 5,073,883 - Psyr_4256 0.73 -1.0 5,073,957 + -0.6 5,074,011 + -0.1 5,074,011 + +1.5 5,074,012 - +1.7 5,074,012 - -1.4 5,074,012 - +0.3 5,074,098 + +2.9 5,074,146 + Psyr_4257 0.15 -0.9 5,074,146 + Psyr_4257 0.15 +1.7 5,074,146 + Psyr_4257 0.15 -0.3 5,074,146 + Psyr_4257 0.15 +0.4 5,074,146 + Psyr_4257 0.15 -0.7 5,074,147 - Psyr_4257 0.15 -0.2 5,074,147 - Psyr_4257 0.15 -0.9 5,074,158 + Psyr_4257 0.17 +0.1 5,074,265 - Psyr_4257 0.39 +0.8 5,074,265 - Psyr_4257 0.39 +0.1 5,074,503 + Psyr_4257 0.88 +3.2 5,074,503 + Psyr_4257 0.88 +0.7 5,074,504 - Psyr_4257 0.88 +1.5 5,074,504 - Psyr_4257 0.88 +0.2 5,074,533 + -2.3 5,074,533 + +0.4 5,074,533 + -1.5 5,074,533 + +1.3 5,074,533 + +0.0 5,074,533 + +0.6 5,074,533 + +0.1 5,074,533 + -0.8 5,074,533 + +3.3 5,074,534 - -0.6 5,074,534 - +0.5 5,074,534 - -1.8 5,074,534 - +0.5 5,074,534 - +0.7 5,074,534 - -1.1 5,074,534 - -0.3 5,074,534 - -0.4 5,074,534 - +1.7 5,074,534 - -1.5 5,074,534 - -0.2 5,074,534 - +1.5 5,074,534 - -0.1 5,074,534 - -1.0 5,074,565 + -0.6 5,074,566 - +0.0 5,074,597 + -2.7 5,074,597 + -0.9 5,074,597 + +1.6 5,074,597 + -0.2 5,074,597 + -0.6 5,074,598 - +0.3 5,074,598 - -1.8 5,074,598 - +1.6 5,074,598 - +0.5 5,074,598 - -1.5 5,074,598 - +0.5 5,074,598 - +0.4 5,074,600 - -0.2 5,074,683 + -0.5 5,074,684 - -0.1 5,074,745 + Psyr_4258 0.19 -0.3 5,074,745 + Psyr_4258 0.19 +1.3 5,074,745 + Psyr_4258 0.19 -0.2 5,074,745 + Psyr_4258 0.19 -0.0 5,074,745 + Psyr_4258 0.19 +0.6 5,074,745 + Psyr_4258 0.19 +0.3 5,074,745 + Psyr_4258 0.19 -2.1 5,074,745 + Psyr_4258 0.19 -0.2 5,074,746 - Psyr_4258 0.19 +0.4 5,074,746 - Psyr_4258 0.19 +2.9 5,074,746 - Psyr_4258 0.19 +0.3 5,074,746 - Psyr_4258 0.19 -1.0 5,074,746 - Psyr_4258 0.19 +0.2 5,074,746 - Psyr_4258 0.19 +1.1 5,074,746 - Psyr_4258 0.19 +0.3 5,074,746 - Psyr_4258 0.19 +0.6 5,074,762 + Psyr_4258 0.24 -0.1 5,074,762 + Psyr_4258 0.24 -0.9 5,074,763 - Psyr_4258 0.25 -1.4 5,074,763 - Psyr_4258 0.25 +1.0 5,074,810 + Psyr_4258 0.39 -0.5 5,075,035 + -0.5 5,075,035 + -0.8 5,075,035 + +1.8 5,075,036 - +0.3 5,075,036 - -0.3 5,075,036 - +0.3 5,075,381 + -0.7 5,075,381 + -0.4 5,075,382 - +0.2 5,075,382 - -0.9 5,075,382 - -0.0 5,075,388 + -0.4 5,075,388 + -0.9 5,075,388 + -0.5 5,075,389 - +0.7 5,075,389 - -0.7 5,075,389 - -0.1 5,075,420 + +0.1 5,075,674 - Psyr_4259 0.20 +0.3 5,075,679 + Psyr_4259 0.20 -1.0 5,075,680 - Psyr_4259 0.21 -0.6
Or see this region's nucleotide sequence