Experiment: KB with Avocadyne 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4227 and Psyr_4228 are separated by 299 nucleotides Psyr_4228 and Psyr_4229 are separated by 113 nucleotides
Psyr_4227: Psyr_4227 - Dihydrodipicolinate synthetase, at 5,034,437 to 5,035,348
_4227
Psyr_4228: Psyr_4228 - transcriptional regulator, GntR family, at 5,035,648 to 5,036,397
_4228
Psyr_4229: Psyr_4229 - ABC transporter:ABC transporter, N-terminal, at 5,036,511 to 5,038,229
_4229
Position (kb) 5035
5036
5037 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5034.669 kb on + strand, within Psyr_4227 at 5034.717 kb on + strand, within Psyr_4227 at 5034.717 kb on + strand, within Psyr_4227 at 5034.717 kb on + strand, within Psyr_4227 at 5034.741 kb on + strand, within Psyr_4227 at 5034.741 kb on + strand, within Psyr_4227 at 5034.741 kb on + strand, within Psyr_4227 at 5034.741 kb on + strand, within Psyr_4227 at 5034.741 kb on + strand, within Psyr_4227 at 5034.742 kb on - strand, within Psyr_4227 at 5034.742 kb on - strand, within Psyr_4227 at 5034.742 kb on - strand, within Psyr_4227 at 5034.753 kb on + strand, within Psyr_4227 at 5034.753 kb on + strand, within Psyr_4227 at 5034.753 kb on + strand, within Psyr_4227 at 5034.754 kb on - strand, within Psyr_4227 at 5034.754 kb on - strand, within Psyr_4227 at 5034.754 kb on - strand, within Psyr_4227 at 5034.754 kb on - strand, within Psyr_4227 at 5034.853 kb on - strand, within Psyr_4227 at 5034.927 kb on + strand, within Psyr_4227 at 5034.928 kb on - strand, within Psyr_4227 at 5035.008 kb on + strand, within Psyr_4227 at 5035.251 kb on + strand, within Psyr_4227 at 5035.371 kb on + strand at 5035.371 kb on + strand at 5035.371 kb on + strand at 5035.371 kb on + strand at 5035.371 kb on + strand at 5035.371 kb on + strand at 5035.371 kb on + strand at 5035.371 kb on + strand at 5035.371 kb on + strand at 5035.371 kb on + strand at 5035.371 kb on + strand at 5035.372 kb on - strand at 5035.372 kb on - strand at 5035.372 kb on - strand at 5035.372 kb on - strand at 5035.372 kb on - strand at 5035.372 kb on - strand at 5035.372 kb on - strand at 5035.372 kb on - strand at 5035.372 kb on - strand at 5035.378 kb on + strand at 5035.431 kb on - strand at 5035.507 kb on + strand at 5035.507 kb on + strand at 5035.507 kb on + strand at 5035.507 kb on + strand at 5035.507 kb on + strand at 5035.507 kb on + strand at 5035.507 kb on + strand at 5035.507 kb on + strand at 5035.508 kb on - strand at 5035.508 kb on - strand at 5035.508 kb on - strand at 5035.508 kb on - strand at 5035.508 kb on - strand at 5035.565 kb on + strand at 5035.565 kb on + strand at 5035.565 kb on + strand at 5035.565 kb on + strand at 5035.565 kb on + strand at 5035.565 kb on + strand at 5035.565 kb on + strand at 5035.566 kb on - strand at 5035.585 kb on + strand at 5035.585 kb on + strand at 5035.586 kb on - strand at 5035.642 kb on + strand at 5035.643 kb on - strand at 5035.800 kb on + strand, within Psyr_4228 at 5035.800 kb on + strand, within Psyr_4228 at 5035.800 kb on + strand, within Psyr_4228 at 5035.800 kb on + strand, within Psyr_4228 at 5035.801 kb on - strand, within Psyr_4228 at 5035.801 kb on - strand, within Psyr_4228 at 5035.801 kb on - strand, within Psyr_4228 at 5035.801 kb on - strand, within Psyr_4228 at 5035.802 kb on + strand, within Psyr_4228 at 5035.802 kb on + strand, within Psyr_4228 at 5035.802 kb on + strand, within Psyr_4228 at 5035.802 kb on + strand, within Psyr_4228 at 5035.802 kb on + strand, within Psyr_4228 at 5035.802 kb on + strand, within Psyr_4228 at 5035.802 kb on + strand, within Psyr_4228 at 5035.802 kb on + strand, within Psyr_4228 at 5035.803 kb on - strand, within Psyr_4228 at 5035.803 kb on - strand, within Psyr_4228 at 5035.803 kb on - strand, within Psyr_4228 at 5035.803 kb on - strand, within Psyr_4228 at 5035.803 kb on - strand, within Psyr_4228 at 5035.803 kb on - strand, within Psyr_4228 at 5035.803 kb on - strand, within Psyr_4228 at 5035.803 kb on - strand, within Psyr_4228 at 5035.803 kb on - strand, within Psyr_4228 at 5035.803 kb on - strand, within Psyr_4228 at 5035.803 kb on - strand, within Psyr_4228 at 5035.895 kb on + strand, within Psyr_4228 at 5036.025 kb on + strand, within Psyr_4228 at 5036.026 kb on - strand, within Psyr_4228 at 5036.026 kb on - strand, within Psyr_4228 at 5036.092 kb on + strand, within Psyr_4228 at 5036.092 kb on + strand, within Psyr_4228 at 5036.092 kb on + strand, within Psyr_4228 at 5036.092 kb on + strand, within Psyr_4228 at 5036.314 kb on - strand, within Psyr_4228 at 5036.420 kb on + strand at 5036.437 kb on + strand at 5036.437 kb on + strand at 5036.437 kb on + strand at 5036.437 kb on + strand at 5036.438 kb on - strand at 5036.452 kb on - strand at 5036.452 kb on - strand at 5036.452 kb on - strand at 5036.452 kb on - strand at 5036.485 kb on + strand at 5036.486 kb on - strand at 5036.686 kb on + strand, within Psyr_4229 at 5036.686 kb on + strand, within Psyr_4229 at 5036.686 kb on + strand, within Psyr_4229 at 5036.686 kb on + strand, within Psyr_4229 at 5036.686 kb on + strand, within Psyr_4229 at 5036.686 kb on + strand, within Psyr_4229 at 5036.686 kb on + strand, within Psyr_4229 at 5036.686 kb on + strand, within Psyr_4229 at 5036.686 kb on + strand, within Psyr_4229 at 5036.687 kb on - strand, within Psyr_4229 at 5036.687 kb on - strand, within Psyr_4229 at 5036.687 kb on - strand, within Psyr_4229 at 5036.687 kb on - strand, within Psyr_4229 at 5036.687 kb on - strand, within Psyr_4229 at 5036.687 kb on - strand, within Psyr_4229 at 5036.687 kb on - strand, within Psyr_4229 at 5036.687 kb on - strand, within Psyr_4229 at 5036.687 kb on - strand, within Psyr_4229 at 5036.687 kb on - strand, within Psyr_4229 at 5036.902 kb on + strand, within Psyr_4229 at 5036.902 kb on + strand, within Psyr_4229 at 5037.236 kb on - strand, within Psyr_4229 at 5037.328 kb on + strand, within Psyr_4229 at 5037.328 kb on + strand, within Psyr_4229 at 5037.329 kb on - strand, within Psyr_4229 at 5037.329 kb on - strand, within Psyr_4229 at 5037.376 kb on + strand, within Psyr_4229
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Avocadyne 10 mM remove 5,034,669 + Psyr_4227 0.25 -0.1 5,034,717 + Psyr_4227 0.31 -0.5 5,034,717 + Psyr_4227 0.31 +0.4 5,034,717 + Psyr_4227 0.31 -0.1 5,034,741 + Psyr_4227 0.33 +2.4 5,034,741 + Psyr_4227 0.33 +0.2 5,034,741 + Psyr_4227 0.33 +0.7 5,034,741 + Psyr_4227 0.33 -0.8 5,034,741 + Psyr_4227 0.33 +0.7 5,034,742 - Psyr_4227 0.33 -0.8 5,034,742 - Psyr_4227 0.33 -0.1 5,034,742 - Psyr_4227 0.33 -0.0 5,034,753 + Psyr_4227 0.35 +0.7 5,034,753 + Psyr_4227 0.35 +0.7 5,034,753 + Psyr_4227 0.35 -0.8 5,034,754 - Psyr_4227 0.35 -0.6 5,034,754 - Psyr_4227 0.35 +1.2 5,034,754 - Psyr_4227 0.35 +1.1 5,034,754 - Psyr_4227 0.35 -0.2 5,034,853 - Psyr_4227 0.46 +1.1 5,034,927 + Psyr_4227 0.54 +1.0 5,034,928 - Psyr_4227 0.54 +4.6 5,035,008 + Psyr_4227 0.63 -0.8 5,035,251 + Psyr_4227 0.89 +1.7 5,035,371 + +2.2 5,035,371 + +0.4 5,035,371 + -0.5 5,035,371 + +0.8 5,035,371 + +1.4 5,035,371 + -0.6 5,035,371 + -1.3 5,035,371 + -1.9 5,035,371 + +2.8 5,035,371 + +1.9 5,035,371 + -3.1 5,035,372 - -2.2 5,035,372 - +0.6 5,035,372 - +0.8 5,035,372 - +4.1 5,035,372 - +0.3 5,035,372 - -1.0 5,035,372 - -2.7 5,035,372 - +0.6 5,035,372 - +0.5 5,035,378 + -3.3 5,035,431 - -1.4 5,035,507 + +3.2 5,035,507 + +3.5 5,035,507 + -0.4 5,035,507 + +2.2 5,035,507 + -0.5 5,035,507 + +0.5 5,035,507 + -0.8 5,035,507 + +0.5 5,035,508 - -2.3 5,035,508 - +0.3 5,035,508 - +0.2 5,035,508 - +0.8 5,035,508 - -0.8 5,035,565 + -0.8 5,035,565 + -1.0 5,035,565 + +0.8 5,035,565 + +0.2 5,035,565 + -0.0 5,035,565 + +0.8 5,035,565 + +0.8 5,035,566 - -0.8 5,035,585 + +2.2 5,035,585 + +0.4 5,035,586 - -0.6 5,035,642 + -2.5 5,035,643 - -0.8 5,035,800 + Psyr_4228 0.20 -2.8 5,035,800 + Psyr_4228 0.20 -0.3 5,035,800 + Psyr_4228 0.20 +0.9 5,035,800 + Psyr_4228 0.20 +2.2 5,035,801 - Psyr_4228 0.20 +0.8 5,035,801 - Psyr_4228 0.20 -0.7 5,035,801 - Psyr_4228 0.20 +1.1 5,035,801 - Psyr_4228 0.20 -2.8 5,035,802 + Psyr_4228 0.21 +0.2 5,035,802 + Psyr_4228 0.21 -1.2 5,035,802 + Psyr_4228 0.21 -1.0 5,035,802 + Psyr_4228 0.21 -0.8 5,035,802 + Psyr_4228 0.21 +1.2 5,035,802 + Psyr_4228 0.21 -0.6 5,035,802 + Psyr_4228 0.21 +0.0 5,035,802 + Psyr_4228 0.21 +0.7 5,035,803 - Psyr_4228 0.21 +0.4 5,035,803 - Psyr_4228 0.21 +0.2 5,035,803 - Psyr_4228 0.21 +1.1 5,035,803 - Psyr_4228 0.21 +1.2 5,035,803 - Psyr_4228 0.21 -0.4 5,035,803 - Psyr_4228 0.21 +0.2 5,035,803 - Psyr_4228 0.21 -0.1 5,035,803 - Psyr_4228 0.21 +0.4 5,035,803 - Psyr_4228 0.21 +2.4 5,035,803 - Psyr_4228 0.21 +1.2 5,035,803 - Psyr_4228 0.21 +0.0 5,035,895 + Psyr_4228 0.33 -0.2 5,036,025 + Psyr_4228 0.50 -0.8 5,036,026 - Psyr_4228 0.50 -1.1 5,036,026 - Psyr_4228 0.50 -0.2 5,036,092 + Psyr_4228 0.59 -0.7 5,036,092 + Psyr_4228 0.59 -0.5 5,036,092 + Psyr_4228 0.59 +0.1 5,036,092 + Psyr_4228 0.59 +2.2 5,036,314 - Psyr_4228 0.89 +0.4 5,036,420 + -0.5 5,036,437 + -1.8 5,036,437 + +0.8 5,036,437 + +1.2 5,036,437 + -0.2 5,036,438 - +0.3 5,036,452 - -1.2 5,036,452 - +0.8 5,036,452 - +0.8 5,036,452 - -1.4 5,036,485 + +0.2 5,036,486 - +0.3 5,036,686 + Psyr_4229 0.10 -0.8 5,036,686 + Psyr_4229 0.10 -0.6 5,036,686 + Psyr_4229 0.10 +0.9 5,036,686 + Psyr_4229 0.10 +1.1 5,036,686 + Psyr_4229 0.10 -0.2 5,036,686 + Psyr_4229 0.10 +0.7 5,036,686 + Psyr_4229 0.10 +0.4 5,036,686 + Psyr_4229 0.10 +0.0 5,036,686 + Psyr_4229 0.10 -0.7 5,036,687 - Psyr_4229 0.10 +0.6 5,036,687 - Psyr_4229 0.10 -0.6 5,036,687 - Psyr_4229 0.10 -0.2 5,036,687 - Psyr_4229 0.10 -0.6 5,036,687 - Psyr_4229 0.10 -2.5 5,036,687 - Psyr_4229 0.10 +1.0 5,036,687 - Psyr_4229 0.10 -0.4 5,036,687 - Psyr_4229 0.10 -1.1 5,036,687 - Psyr_4229 0.10 -0.4 5,036,687 - Psyr_4229 0.10 -0.5 5,036,902 + Psyr_4229 0.23 +1.4 5,036,902 + Psyr_4229 0.23 +0.0 5,037,236 - Psyr_4229 0.42 -3.1 5,037,328 + Psyr_4229 0.48 +0.0 5,037,328 + Psyr_4229 0.48 +0.7 5,037,329 - Psyr_4229 0.48 -1.8 5,037,329 - Psyr_4229 0.48 -0.5 5,037,376 + Psyr_4229 0.50 -1.2
Or see this region's nucleotide sequence