Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3747

Experiment: KB with Avocadyne 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3746 and Psyr_3747 are separated by 421 nucleotidesPsyr_3747 and Psyr_3748 are separated by 3 nucleotides Psyr_3746: Psyr_3746 - hypothetical protein, at 4,463,509 to 4,464,039 _3746 Psyr_3747: Psyr_3747 - asparagine synthase (glutamine-hydrolysing), at 4,464,461 to 4,466,233 _3747 Psyr_3748: Psyr_3748 - GCN5-related N-acetyltransferase, at 4,466,237 to 4,467,985 _3748 Position (kb) 4464 4465 4466 4467Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4463.528 kb on + strandat 4463.528 kb on + strandat 4463.621 kb on + strand, within Psyr_3746at 4463.622 kb on - strand, within Psyr_3746at 4463.635 kb on + strand, within Psyr_3746at 4463.635 kb on + strand, within Psyr_3746at 4463.635 kb on + strand, within Psyr_3746at 4463.636 kb on - strand, within Psyr_3746at 4463.636 kb on - strand, within Psyr_3746at 4463.657 kb on + strand, within Psyr_3746at 4463.657 kb on + strand, within Psyr_3746at 4463.657 kb on + strand, within Psyr_3746at 4463.708 kb on + strand, within Psyr_3746at 4463.708 kb on + strand, within Psyr_3746at 4463.708 kb on + strand, within Psyr_3746at 4463.708 kb on + strand, within Psyr_3746at 4463.709 kb on - strand, within Psyr_3746at 4463.725 kb on - strand, within Psyr_3746at 4463.759 kb on + strand, within Psyr_3746at 4463.759 kb on + strand, within Psyr_3746at 4463.760 kb on - strand, within Psyr_3746at 4463.760 kb on - strand, within Psyr_3746at 4463.760 kb on - strand, within Psyr_3746at 4463.760 kb on - strand, within Psyr_3746at 4463.760 kb on - strand, within Psyr_3746at 4463.760 kb on - strand, within Psyr_3746at 4463.760 kb on - strand, within Psyr_3746at 4463.896 kb on + strand, within Psyr_3746at 4463.942 kb on + strand, within Psyr_3746at 4463.943 kb on - strand, within Psyr_3746at 4463.943 kb on - strand, within Psyr_3746at 4463.943 kb on - strand, within Psyr_3746at 4463.943 kb on - strand, within Psyr_3746at 4463.943 kb on - strand, within Psyr_3746at 4463.943 kb on - strand, within Psyr_3746at 4463.943 kb on - strand, within Psyr_3746at 4464.034 kb on - strandat 4464.034 kb on - strandat 4464.103 kb on + strandat 4464.103 kb on + strandat 4464.163 kb on + strandat 4464.163 kb on + strandat 4464.163 kb on + strandat 4464.163 kb on + strandat 4464.164 kb on - strandat 4464.164 kb on - strandat 4464.164 kb on - strandat 4464.164 kb on - strandat 4464.164 kb on - strandat 4464.164 kb on - strandat 4464.164 kb on - strandat 4464.167 kb on + strandat 4464.167 kb on + strandat 4464.167 kb on + strandat 4464.167 kb on + strandat 4464.168 kb on - strandat 4464.168 kb on - strandat 4464.168 kb on - strandat 4464.168 kb on - strandat 4464.206 kb on + strandat 4464.207 kb on - strandat 4464.248 kb on + strandat 4464.248 kb on + strandat 4464.248 kb on + strandat 4464.248 kb on + strandat 4464.249 kb on - strandat 4464.249 kb on - strandat 4464.249 kb on - strandat 4464.249 kb on - strandat 4464.460 kb on + strandat 4464.460 kb on + strandat 4464.460 kb on + strandat 4464.460 kb on + strandat 4464.460 kb on + strandat 4464.460 kb on + strandat 4464.460 kb on + strandat 4464.460 kb on + strandat 4464.461 kb on - strandat 4464.461 kb on - strandat 4464.461 kb on - strandat 4464.461 kb on - strandat 4464.461 kb on - strandat 4464.461 kb on - strandat 4464.461 kb on - strandat 4464.461 kb on - strandat 4464.461 kb on - strandat 4464.483 kb on + strandat 4464.484 kb on - strandat 4464.511 kb on - strandat 4464.574 kb on + strandat 4464.695 kb on + strand, within Psyr_3747at 4464.782 kb on + strand, within Psyr_3747at 4464.902 kb on + strand, within Psyr_3747at 4464.902 kb on + strand, within Psyr_3747at 4464.902 kb on + strand, within Psyr_3747at 4464.902 kb on + strand, within Psyr_3747at 4464.902 kb on + strand, within Psyr_3747at 4464.902 kb on + strand, within Psyr_3747at 4464.903 kb on - strand, within Psyr_3747at 4464.903 kb on - strand, within Psyr_3747at 4464.903 kb on - strand, within Psyr_3747at 4464.903 kb on - strand, within Psyr_3747at 4464.903 kb on - strand, within Psyr_3747at 4464.903 kb on - strand, within Psyr_3747at 4464.970 kb on + strand, within Psyr_3747at 4464.971 kb on - strand, within Psyr_3747at 4465.007 kb on + strand, within Psyr_3747at 4465.008 kb on - strand, within Psyr_3747at 4465.520 kb on + strand, within Psyr_3747at 4465.560 kb on + strand, within Psyr_3747at 4466.062 kb on + strandat 4466.062 kb on + strandat 4466.062 kb on + strandat 4466.063 kb on - strandat 4466.258 kb on + strandat 4466.258 kb on + strandat 4466.259 kb on - strandat 4466.259 kb on - strandat 4466.259 kb on - strandat 4466.259 kb on - strandat 4466.260 kb on + strandat 4466.260 kb on + strandat 4466.261 kb on - strandat 4466.294 kb on + strandat 4466.295 kb on - strandat 4466.337 kb on + strandat 4466.338 kb on - strandat 4466.465 kb on + strand, within Psyr_3748at 4466.466 kb on - strand, within Psyr_3748at 4466.466 kb on - strand, within Psyr_3748at 4466.466 kb on - strand, within Psyr_3748at 4466.466 kb on - strand, within Psyr_3748at 4466.605 kb on + strand, within Psyr_3748at 4466.640 kb on - strand, within Psyr_3748at 4466.640 kb on - strand, within Psyr_3748at 4466.640 kb on - strand, within Psyr_3748at 4466.709 kb on - strand, within Psyr_3748at 4466.906 kb on + strand, within Psyr_3748at 4466.906 kb on + strand, within Psyr_3748at 4466.906 kb on + strand, within Psyr_3748at 4466.907 kb on - strand, within Psyr_3748at 4466.907 kb on - strand, within Psyr_3748at 4466.907 kb on - strand, within Psyr_3748at 4466.907 kb on - strand, within Psyr_3748at 4467.149 kb on + strand, within Psyr_3748at 4467.149 kb on + strand, within Psyr_3748

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Avocadyne 10 mM
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4,463,528 + +2.1
4,463,528 + -0.0
4,463,621 + Psyr_3746 0.21 -0.0
4,463,622 - Psyr_3746 0.21 +1.2
4,463,635 + Psyr_3746 0.24 -2.6
4,463,635 + Psyr_3746 0.24 +3.8
4,463,635 + Psyr_3746 0.24 -0.5
4,463,636 - Psyr_3746 0.24 +0.7
4,463,636 - Psyr_3746 0.24 -0.8
4,463,657 + Psyr_3746 0.28 -0.8
4,463,657 + Psyr_3746 0.28 +0.9
4,463,657 + Psyr_3746 0.28 +0.2
4,463,708 + Psyr_3746 0.37 -2.3
4,463,708 + Psyr_3746 0.37 -0.5
4,463,708 + Psyr_3746 0.37 +0.6
4,463,708 + Psyr_3746 0.37 -1.9
4,463,709 - Psyr_3746 0.38 -0.0
4,463,725 - Psyr_3746 0.41 +0.4
4,463,759 + Psyr_3746 0.47 +0.8
4,463,759 + Psyr_3746 0.47 +0.2
4,463,760 - Psyr_3746 0.47 -0.3
4,463,760 - Psyr_3746 0.47 -0.3
4,463,760 - Psyr_3746 0.47 -0.3
4,463,760 - Psyr_3746 0.47 -0.8
4,463,760 - Psyr_3746 0.47 -0.7
4,463,760 - Psyr_3746 0.47 -0.8
4,463,760 - Psyr_3746 0.47 +2.2
4,463,896 + Psyr_3746 0.73 -0.6
4,463,942 + Psyr_3746 0.82 -1.0
4,463,943 - Psyr_3746 0.82 +2.5
4,463,943 - Psyr_3746 0.82 +1.2
4,463,943 - Psyr_3746 0.82 -1.9
4,463,943 - Psyr_3746 0.82 +2.2
4,463,943 - Psyr_3746 0.82 -0.8
4,463,943 - Psyr_3746 0.82 -0.1
4,463,943 - Psyr_3746 0.82 -0.5
4,464,034 - +1.6
4,464,034 - +0.8
4,464,103 + -1.8
4,464,103 + -0.0
4,464,163 + -1.6
4,464,163 + +0.4
4,464,163 + -0.0
4,464,163 + -0.9
4,464,164 - -1.3
4,464,164 - -0.9
4,464,164 - -0.0
4,464,164 - -1.3
4,464,164 - -0.0
4,464,164 - +0.5
4,464,164 - -0.0
4,464,167 + +0.5
4,464,167 + -1.2
4,464,167 + -1.9
4,464,167 + +0.9
4,464,168 - +0.2
4,464,168 - -1.2
4,464,168 - -1.0
4,464,168 - -1.0
4,464,206 + -0.2
4,464,207 - -4.0
4,464,248 + +2.7
4,464,248 + +2.2
4,464,248 + -2.3
4,464,248 + -1.0
4,464,249 - -0.6
4,464,249 - -0.6
4,464,249 - +0.0
4,464,249 - +1.0
4,464,460 + +2.0
4,464,460 + -1.4
4,464,460 + +0.1
4,464,460 + +0.3
4,464,460 + -1.0
4,464,460 + +0.2
4,464,460 + -0.3
4,464,460 + +0.4
4,464,461 - -0.2
4,464,461 - -0.8
4,464,461 - -0.7
4,464,461 - -1.4
4,464,461 - +0.7
4,464,461 - -0.7
4,464,461 - -0.5
4,464,461 - -0.9
4,464,461 - -0.1
4,464,483 + -0.6
4,464,484 - -1.7
4,464,511 - +0.6
4,464,574 + +0.7
4,464,695 + Psyr_3747 0.13 -2.8
4,464,782 + Psyr_3747 0.18 -0.2
4,464,902 + Psyr_3747 0.25 -0.9
4,464,902 + Psyr_3747 0.25 +0.4
4,464,902 + Psyr_3747 0.25 -0.8
4,464,902 + Psyr_3747 0.25 +0.2
4,464,902 + Psyr_3747 0.25 +0.8
4,464,902 + Psyr_3747 0.25 -0.6
4,464,903 - Psyr_3747 0.25 -1.2
4,464,903 - Psyr_3747 0.25 -1.0
4,464,903 - Psyr_3747 0.25 -0.1
4,464,903 - Psyr_3747 0.25 +0.8
4,464,903 - Psyr_3747 0.25 +0.0
4,464,903 - Psyr_3747 0.25 +1.2
4,464,970 + Psyr_3747 0.29 -0.1
4,464,971 - Psyr_3747 0.29 -0.6
4,465,007 + Psyr_3747 0.31 +3.8
4,465,008 - Psyr_3747 0.31 -3.1
4,465,520 + Psyr_3747 0.60 +0.8
4,465,560 + Psyr_3747 0.62 +0.2
4,466,062 + -1.9
4,466,062 + +1.5
4,466,062 + +1.5
4,466,063 - +1.0
4,466,258 + +1.3
4,466,258 + +2.5
4,466,259 - -2.5
4,466,259 - -0.8
4,466,259 - -2.7
4,466,259 - +0.8
4,466,260 + +1.7
4,466,260 + -1.2
4,466,261 - -2.3
4,466,294 + +0.4
4,466,295 - +0.5
4,466,337 + +0.7
4,466,338 - +1.2
4,466,465 + Psyr_3748 0.13 +1.4
4,466,466 - Psyr_3748 0.13 -0.0
4,466,466 - Psyr_3748 0.13 -0.2
4,466,466 - Psyr_3748 0.13 -0.2
4,466,466 - Psyr_3748 0.13 -1.9
4,466,605 + Psyr_3748 0.21 -1.2
4,466,640 - Psyr_3748 0.23 +0.0
4,466,640 - Psyr_3748 0.23 +1.0
4,466,640 - Psyr_3748 0.23 +0.2
4,466,709 - Psyr_3748 0.27 -0.7
4,466,906 + Psyr_3748 0.38 +0.7
4,466,906 + Psyr_3748 0.38 +1.5
4,466,906 + Psyr_3748 0.38 +1.0
4,466,907 - Psyr_3748 0.38 -1.4
4,466,907 - Psyr_3748 0.38 +0.7
4,466,907 - Psyr_3748 0.38 -1.2
4,466,907 - Psyr_3748 0.38 -0.0
4,467,149 + Psyr_3748 0.52 -0.6
4,467,149 + Psyr_3748 0.52 +1.8

Or see this region's nucleotide sequence