Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3074

Experiment: KB with Avocadyne 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Avocadyne 10 mM
3,673,078	-		Psyr_3073	0.33	-0.6
3,673,187	+		Psyr_3073	0.45	-0.2
3,673,188	-		Psyr_3073	0.46	-0.7
3,673,189	+		Psyr_3073	0.46	-2.5
3,673,189	+		Psyr_3073	0.46	-1.8
3,673,189	+		Psyr_3073	0.46	+0.5
3,673,190	-		Psyr_3073	0.46	+0.0
3,673,190	-		Psyr_3073	0.46	+0.5
3,673,190	-		Psyr_3073	0.46	-0.8
3,673,190	-		Psyr_3073	0.46	-3.5
3,673,190	-		Psyr_3073	0.46	+1.0
3,673,190	-		Psyr_3073	0.46	+0.2
3,673,449	+		Psyr_3073	0.74	+1.9
3,673,450	-		Psyr_3073	0.74	+2.3
3,673,478	+		Psyr_3073	0.77	-0.5
3,673,478	+		Psyr_3073	0.77	+0.3
3,673,478	+		Psyr_3073	0.77	+0.5
3,673,478	+		Psyr_3073	0.77	-0.9
3,673,479	-		Psyr_3073	0.77	+0.8
3,673,479	-		Psyr_3073	0.77	-1.2
3,673,479	-		Psyr_3073	0.77	-1.1
3,673,590	+		Psyr_3073	0.90	-0.2
3,673,591	-		Psyr_3073	0.90	-1.2
3,673,700	-				-0.2
3,673,716	+				+0.3
3,673,717	-				+1.3
3,673,730	-				+0.5
3,673,768	-				-0.2
3,673,827	+				+0.9
3,673,827	+				-0.5
3,673,846	+				-1.5
3,673,902	-				+0.8
3,673,902	-				-2.8
3,673,906	+				-2.1
3,673,908	+				-1.1
3,673,908	+				+0.5
3,673,908	+				+1.5
3,673,908	+				+0.5
3,673,909	-				+0.3
3,673,909	-				+0.1
3,673,909	-				+0.3
3,673,909	-				-1.8
3,673,912	+				+0.7
3,673,912	+				+2.3
3,673,912	+				+0.2
3,673,913	-				+0.1
3,673,918	+				+0.4
3,673,918	+				+0.9
3,673,918	+				+0.9
3,673,919	-				-0.7
3,673,946	+				-1.7
3,673,946	+				-0.7
3,673,947	-				-0.3
3,673,947	-				-2.2
3,673,949	+				-1.0
3,673,955	+				+0.0
3,673,955	+				-1.8
3,674,002	+				-0.7
3,674,002	+				-0.2
3,674,002	+				-0.7
3,674,002	+				+2.3
3,674,002	+				+0.2
3,674,003	-				-0.5
3,674,003	-				+2.2
3,674,009	-				+0.3
3,674,050	+				-3.0
3,674,051	-				+0.3
3,674,066	+				+0.3
3,674,066	+				-1.0
3,674,066	+				-1.0
3,674,066	+				-0.6
3,674,066	+				+1.1
3,674,066	+				-0.6
3,674,067	-				+0.3
3,674,067	-				+0.5
3,674,067	-				+2.6
3,674,067	-				+1.7
3,674,358	+		Psyr_3074	0.14	-0.9
3,674,358	+		Psyr_3074	0.14	-1.5
3,674,358	+		Psyr_3074	0.14	+0.4
3,674,359	-		Psyr_3074	0.14	-1.1
3,674,359	-		Psyr_3074	0.14	-1.8
3,674,389	+		Psyr_3074	0.15	+0.0
3,674,480	+		Psyr_3074	0.18	-2.9
3,674,687	+		Psyr_3074	0.26	-0.1
3,674,688	-		Psyr_3074	0.27	-0.3
3,674,711	+		Psyr_3074	0.27	+0.5
3,674,712	-		Psyr_3074	0.27	+1.2
3,674,739	+		Psyr_3074	0.29	+2.3
3,674,739	+		Psyr_3074	0.29	-0.9
3,674,739	+		Psyr_3074	0.29	+1.0
3,674,739	+		Psyr_3074	0.29	-1.3
3,674,739	+		Psyr_3074	0.29	-1.1
3,674,739	+		Psyr_3074	0.29	-0.0
3,674,740	-		Psyr_3074	0.29	-0.3
3,674,740	-		Psyr_3074	0.29	+1.7
3,674,740	-		Psyr_3074	0.29	+0.3
3,674,740	-		Psyr_3074	0.29	+0.7
3,674,740	-		Psyr_3074	0.29	+1.1
3,674,743	+		Psyr_3074	0.29	-1.4
3,674,743	+		Psyr_3074	0.29	-1.0
3,674,743	+		Psyr_3074	0.29	-0.4
3,674,744	-		Psyr_3074	0.29	-0.4
3,674,744	-		Psyr_3074	0.29	+0.7
3,674,744	-		Psyr_3074	0.29	+0.3
3,674,744	-		Psyr_3074	0.29	+0.6
3,674,879	-		Psyr_3074	0.34	-1.8
3,674,879	-		Psyr_3074	0.34	-1.2
3,674,903	-		Psyr_3074	0.35	+0.7
3,674,956	+		Psyr_3074	0.37	+0.7
3,675,071	+		Psyr_3074	0.41	-0.3
3,675,071	+		Psyr_3074	0.41	-2.9
3,675,177	+		Psyr_3074	0.46	+0.1
3,675,177	+		Psyr_3074	0.46	-1.5
3,675,177	+		Psyr_3074	0.46	-1.3
3,675,177	+		Psyr_3074	0.46	-0.4
3,675,177	+		Psyr_3074	0.46	-0.9
3,675,177	+		Psyr_3074	0.46	-1.1
3,675,178	-		Psyr_3074	0.46	-2.1
3,675,178	-		Psyr_3074	0.46	+1.0
3,675,236	-		Psyr_3074	0.48	-0.0
3,675,255	+		Psyr_3074	0.49	+0.3
3,675,332	+		Psyr_3074	0.52	-0.5
3,675,421	+		Psyr_3074	0.55	-2.0
3,675,421	+		Psyr_3074	0.55	-1.7
3,675,421	+		Psyr_3074	0.55	-2.5
3,675,421	+		Psyr_3074	0.55	+1.3
3,675,421	+		Psyr_3074	0.55	+0.0
3,675,421	+		Psyr_3074	0.55	+0.3
3,675,422	-		Psyr_3074	0.55	-0.6
3,675,422	-		Psyr_3074	0.55	+0.1
3,675,422	-		Psyr_3074	0.55	-0.4
3,675,422	-		Psyr_3074	0.55	+0.7
3,675,422	-		Psyr_3074	0.55	-1.4
3,675,446	-		Psyr_3074	0.56	+0.6
3,675,480	-		Psyr_3074	0.57	+0.4
3,675,480	-		Psyr_3074	0.57	-1.0
3,675,483	+		Psyr_3074	0.57	+0.1
3,675,483	+		Psyr_3074	0.57	-1.5
3,675,553	+		Psyr_3074	0.60	+2.1
3,675,553	+		Psyr_3074	0.60	-2.5
3,675,553	+		Psyr_3074	0.60	-0.1
3,675,553	+		Psyr_3074	0.60	-1.7
3,675,553	+		Psyr_3074	0.60	-0.7
3,675,554	-		Psyr_3074	0.60	-1.3
3,675,554	-		Psyr_3074	0.60	-0.4
3,675,608	-		Psyr_3074	0.62	-0.6
3,675,608	-		Psyr_3074	0.62	-1.1
3,675,722	+		Psyr_3074	0.67	-0.5
3,675,724	+		Psyr_3074	0.67	+0.0
3,675,724	+		Psyr_3074	0.67	-1.7
3,675,725	-		Psyr_3074	0.67	-1.3
3,675,725	-		Psyr_3074	0.67	+0.3
3,675,725	-		Psyr_3074	0.67	-0.3
3,675,730	+		Psyr_3074	0.67	+1.8
3,675,730	+		Psyr_3074	0.67	-0.9
3,675,731	-		Psyr_3074	0.67	-0.5
3,675,830	+		Psyr_3074	0.71	+3.7
3,675,831	-		Psyr_3074	0.71	+1.7
3,675,837	-		Psyr_3074	0.71	-1.7
3,675,845	+		Psyr_3074	0.72	+0.3
3,675,845	+		Psyr_3074	0.72	+3.7
3,675,895	+		Psyr_3074	0.74	-0.1
3,675,896	-		Psyr_3074	0.74	-0.1
3,675,896	-		Psyr_3074	0.74	+0.2
3,675,904	+		Psyr_3074	0.74	-3.0
3,675,904	+		Psyr_3074	0.74	+1.3
3,675,904	+		Psyr_3074	0.74	-3.0
3,675,904	+		Psyr_3074	0.74	-1.1
3,675,904	+		Psyr_3074	0.74	-1.3
3,675,905	-		Psyr_3074	0.74	+1.1
3,675,905	-		Psyr_3074	0.74	-2.0
3,675,905	-		Psyr_3074	0.74	+1.0
3,675,905	-		Psyr_3074	0.74	+0.7
3,675,905	-		Psyr_3074	0.74	+1.0
3,675,934	+		Psyr_3074	0.75	+0.0
3,675,934	+		Psyr_3074	0.75	-1.1
3,675,934	+		Psyr_3074	0.75	+0.8
3,675,935	-		Psyr_3074	0.75	-1.3
3,675,935	-		Psyr_3074	0.75	-0.2
3,675,935	-		Psyr_3074	0.75	-0.7
3,675,935	-		Psyr_3074	0.75	-0.1
3,676,090	+		Psyr_3074	0.81	-2.6
3,676,090	+		Psyr_3074	0.81	+0.7
3,676,090	+		Psyr_3074	0.81	+2.7
3,676,090	+		Psyr_3074	0.81	+1.3
3,676,090	+		Psyr_3074	0.81	-1.5
3,676,090	+		Psyr_3074	0.81	-1.0
3,676,091	-		Psyr_3074	0.81	+1.6
3,676,091	-		Psyr_3074	0.81	+0.1
3,676,091	-		Psyr_3074	0.81	-1.3
3,676,091	-		Psyr_3074	0.81	+0.8
3,676,104	-		Psyr_3074	0.82	+2.9
3,676,145	-		Psyr_3074	0.83	+2.1
3,676,145	-		Psyr_3074	0.83	+0.1
3,676,151	+		Psyr_3074	0.83	-1.5
3,676,246	+		Psyr_3074	0.87	+0.5
3,676,256	+		Psyr_3074	0.88	-1.6
3,676,256	+		Psyr_3074	0.88	-0.7
3,676,256	+		Psyr_3074	0.88	-0.4
3,676,306	+		Psyr_3074	0.90	-0.8
3,676,306	+		Psyr_3074	0.90	+0.6
3,676,307	-		Psyr_3074	0.90	+0.3
3,676,312	+		Psyr_3074	0.90	-0.7
3,676,312	+		Psyr_3074	0.90	-0.7
3,676,316	+		Psyr_3074	0.90	-0.8
3,676,316	+		Psyr_3074	0.90	-0.5
3,676,317	-		Psyr_3074	0.90	-0.9
3,676,317	-		Psyr_3074	0.90	+1.0
3,676,362	+				-3.4
3,676,363	-				+0.9
3,676,442	-				-0.4
3,676,442	-				-0.5
3,676,442	-				+1.1
3,676,497	+				-2.1
3,676,497	+				-0.3
3,676,497	+				-1.5
3,676,497	+				-0.5
3,676,498	-				+0.4
3,676,498	-				+3.6
3,676,498	-				-2.2
3,676,551	-				+0.6
3,676,553	+				+0.7
3,676,553	+				-0.9
3,676,553	+				+1.1
3,676,554	-				+0.7
3,676,554	-				-2.4
3,676,566	-				+0.5
3,676,595	-				-1.1
3,676,595	-				+4.5
3,676,595	-				+1.9
3,676,601	-				-1.8
3,676,620	+				+0.4
3,676,620	+				+1.2
3,676,620	+				+0.0
3,676,621	-				+0.0
3,676,624	-				+0.3
3,676,675	-				-1.2
3,676,765	+		Psyr_3075	0.10	-1.0
3,676,774	+		Psyr_3075	0.11	+1.3
3,676,795	-		Psyr_3075	0.12	-0.9
3,676,795	-		Psyr_3075	0.12	+1.1
3,676,795	-		Psyr_3075	0.12	-1.2
3,676,795	-		Psyr_3075	0.12	-0.1
3,676,795	-		Psyr_3075	0.12	+0.5
3,676,856	+		Psyr_3075	0.16	-1.8
3,676,856	+		Psyr_3075	0.16	+0.5
3,676,866	+		Psyr_3075	0.17	+1.1
3,676,867	-		Psyr_3075	0.17	+1.7
3,676,982	+		Psyr_3075	0.25	-0.3
3,676,982	+		Psyr_3075	0.25	+2.1
3,676,982	+		Psyr_3075	0.25	+0.5
3,676,985	+		Psyr_3075	0.26	+1.8
3,676,985	+		Psyr_3075	0.26	+0.5
3,676,985	+		Psyr_3075	0.26	-1.0
3,676,986	-		Psyr_3075	0.26	-0.8
3,677,298	+		Psyr_3075	0.48	+0.6
3,677,316	+		Psyr_3075	0.49	+3.7
3,677,316	+		Psyr_3075	0.49	+0.2
3,677,316	+		Psyr_3075	0.49	+2.3
3,677,317	-		Psyr_3075	0.49	+0.1
3,677,317	-		Psyr_3075	0.49	+1.7
3,677,317	-		Psyr_3075	0.49	+0.7
3,677,317	-		Psyr_3075	0.49	-1.2
3,677,398	+		Psyr_3075	0.55	+0.9
3,677,459	-		Psyr_3075	0.59	-0.4
3,677,507	+		Psyr_3075	0.62	+0.7
3,677,507	+		Psyr_3075	0.62	+2.3
3,677,507	+		Psyr_3075	0.62	+0.8
3,677,507	+		Psyr_3075	0.62	-0.2
3,677,507	+		Psyr_3075	0.62	-1.1
3,677,507	+		Psyr_3075	0.62	+1.2
3,677,508	-		Psyr_3075	0.62	+0.7
3,677,508	-		Psyr_3075	0.62	+0.7
3,677,508	-		Psyr_3075	0.62	-0.5
3,677,508	-		Psyr_3075	0.62	+1.8
3,677,508	-		Psyr_3075	0.62	+0.3