Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0568

Experiment: KB with Avocadyne 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0567 and Psyr_0568 are separated by 26 nucleotidesPsyr_0568 and Psyr_0569 are separated by 14 nucleotides Psyr_0567: Psyr_0567 - Protein of unknown function UPF0031:YjeF-related protein, N-terminal, at 644,229 to 645,719 _0567 Psyr_0568: Psyr_0568 - Protein of unknown function UPF0079, at 645,746 to 646,177 _0568 Psyr_0569: Psyr_0569 - N-acetylmuramoyl-L-alanine amidase, at 646,192 to 647,607 _0569 Position (kb) 645 646 647Strain fitness (log2 ratio) -2 -1 0 1at 644.904 kb on - strand, within Psyr_0567at 644.949 kb on - strand, within Psyr_0567at 645.275 kb on + strand, within Psyr_0567at 645.276 kb on - strand, within Psyr_0567at 645.276 kb on - strand, within Psyr_0567at 645.276 kb on - strand, within Psyr_0567at 645.276 kb on - strand, within Psyr_0567at 646.187 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Avocadyne 10 mM
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644,904 - Psyr_0567 0.45 -2.7
644,949 - Psyr_0567 0.48 +0.0
645,275 + Psyr_0567 0.70 +0.0
645,276 - Psyr_0567 0.70 -1.3
645,276 - Psyr_0567 0.70 +0.0
645,276 - Psyr_0567 0.70 +0.7
645,276 - Psyr_0567 0.70 -1.0
646,187 + -0.5

Or see this region's nucleotide sequence