Experiment: KB with Avocadyne 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0426 and Psyr_0427 overlap by 4 nucleotides Psyr_0427 and Psyr_0428 overlap by 4 nucleotides Psyr_0428 and Psyr_0429 are separated by 54 nucleotides
Psyr_0426: Psyr_0426 - lipoprotein, putative, at 465,143 to 465,625
_0426
Psyr_0427: Psyr_0427 - conserved hypothetical protein, at 465,622 to 466,356
_0427
Psyr_0428: Psyr_0428 - Monooxygenase, FAD-binding protein, at 466,353 to 467,600
_0428
Psyr_0429: Psyr_0429 - membrane protein, putative, at 467,655 to 470,030
_0429
Position (kb) 466
467
468 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 465.532 kb on + strand, within Psyr_0426 at 465.758 kb on + strand, within Psyr_0427 at 465.758 kb on + strand, within Psyr_0427 at 465.887 kb on + strand, within Psyr_0427 at 465.887 kb on + strand, within Psyr_0427 at 465.888 kb on - strand, within Psyr_0427 at 465.888 kb on - strand, within Psyr_0427 at 465.888 kb on - strand, within Psyr_0427 at 465.888 kb on - strand, within Psyr_0427 at 465.888 kb on - strand, within Psyr_0427 at 466.252 kb on + strand, within Psyr_0427 at 466.275 kb on - strand, within Psyr_0427 at 466.288 kb on - strand at 466.328 kb on + strand at 466.328 kb on + strand at 466.328 kb on + strand at 466.328 kb on + strand at 466.328 kb on + strand at 466.329 kb on - strand at 466.329 kb on - strand at 466.329 kb on - strand at 466.329 kb on - strand at 466.495 kb on + strand, within Psyr_0428 at 466.496 kb on - strand, within Psyr_0428 at 466.517 kb on + strand, within Psyr_0428 at 466.517 kb on + strand, within Psyr_0428 at 466.540 kb on + strand, within Psyr_0428 at 466.540 kb on + strand, within Psyr_0428 at 467.025 kb on - strand, within Psyr_0428 at 467.140 kb on + strand, within Psyr_0428 at 467.140 kb on + strand, within Psyr_0428 at 467.341 kb on + strand, within Psyr_0428 at 467.341 kb on + strand, within Psyr_0428 at 467.341 kb on + strand, within Psyr_0428 at 467.342 kb on - strand, within Psyr_0428 at 467.342 kb on - strand, within Psyr_0428 at 467.342 kb on - strand, within Psyr_0428 at 467.604 kb on + strand at 467.604 kb on + strand at 467.605 kb on - strand at 467.605 kb on - strand at 467.605 kb on - strand at 467.605 kb on - strand at 467.605 kb on - strand at 467.605 kb on - strand at 467.700 kb on - strand at 467.893 kb on + strand, within Psyr_0429 at 467.894 kb on - strand, within Psyr_0429 at 468.045 kb on + strand, within Psyr_0429 at 468.067 kb on - strand, within Psyr_0429 at 468.339 kb on + strand, within Psyr_0429 at 468.339 kb on + strand, within Psyr_0429 at 468.340 kb on - strand, within Psyr_0429 at 468.404 kb on - strand, within Psyr_0429 at 468.404 kb on - strand, within Psyr_0429 at 468.481 kb on + strand, within Psyr_0429 at 468.481 kb on + strand, within Psyr_0429 at 468.481 kb on + strand, within Psyr_0429 at 468.481 kb on + strand, within Psyr_0429 at 468.481 kb on + strand, within Psyr_0429 at 468.481 kb on + strand, within Psyr_0429 at 468.481 kb on + strand, within Psyr_0429 at 468.481 kb on + strand, within Psyr_0429 at 468.482 kb on - strand, within Psyr_0429 at 468.482 kb on - strand, within Psyr_0429 at 468.482 kb on - strand, within Psyr_0429 at 468.482 kb on - strand, within Psyr_0429 at 468.482 kb on - strand, within Psyr_0429 at 468.482 kb on - strand, within Psyr_0429 at 468.482 kb on - strand, within Psyr_0429 at 468.482 kb on - strand, within Psyr_0429
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Avocadyne 10 mM remove 465,532 + Psyr_0426 0.81 +0.5 465,758 + Psyr_0427 0.19 +0.2 465,758 + Psyr_0427 0.19 -0.9 465,887 + Psyr_0427 0.36 -1.4 465,887 + Psyr_0427 0.36 -1.2 465,888 - Psyr_0427 0.36 +0.1 465,888 - Psyr_0427 0.36 +1.2 465,888 - Psyr_0427 0.36 -1.3 465,888 - Psyr_0427 0.36 +3.6 465,888 - Psyr_0427 0.36 +0.1 466,252 + Psyr_0427 0.86 -0.2 466,275 - Psyr_0427 0.89 -0.5 466,288 - -0.7 466,328 + +0.1 466,328 + +1.6 466,328 + -1.1 466,328 + -0.2 466,328 + -0.3 466,329 - +0.3 466,329 - -0.0 466,329 - +0.1 466,329 - +0.0 466,495 + Psyr_0428 0.11 -0.3 466,496 - Psyr_0428 0.11 -0.5 466,517 + Psyr_0428 0.13 +0.3 466,517 + Psyr_0428 0.13 +2.5 466,540 + Psyr_0428 0.15 -0.4 466,540 + Psyr_0428 0.15 +0.7 467,025 - Psyr_0428 0.54 +1.0 467,140 + Psyr_0428 0.63 +1.1 467,140 + Psyr_0428 0.63 +1.3 467,341 + Psyr_0428 0.79 -1.3 467,341 + Psyr_0428 0.79 +0.2 467,341 + Psyr_0428 0.79 +0.4 467,342 - Psyr_0428 0.79 +0.2 467,342 - Psyr_0428 0.79 +2.0 467,342 - Psyr_0428 0.79 +2.3 467,604 + +2.0 467,604 + +0.3 467,605 - -1.2 467,605 - -0.8 467,605 - -1.2 467,605 - +3.6 467,605 - -0.1 467,605 - -0.3 467,700 - -2.0 467,893 + Psyr_0429 0.10 -1.1 467,894 - Psyr_0429 0.10 -0.5 468,045 + Psyr_0429 0.16 +0.8 468,067 - Psyr_0429 0.17 -0.4 468,339 + Psyr_0429 0.29 -0.0 468,339 + Psyr_0429 0.29 +1.3 468,340 - Psyr_0429 0.29 +0.8 468,404 - Psyr_0429 0.32 -0.7 468,404 - Psyr_0429 0.32 -0.5 468,481 + Psyr_0429 0.35 +0.4 468,481 + Psyr_0429 0.35 +1.3 468,481 + Psyr_0429 0.35 +0.3 468,481 + Psyr_0429 0.35 -0.3 468,481 + Psyr_0429 0.35 -1.5 468,481 + Psyr_0429 0.35 +1.0 468,481 + Psyr_0429 0.35 +0.8 468,481 + Psyr_0429 0.35 -2.0 468,482 - Psyr_0429 0.35 +2.3 468,482 - Psyr_0429 0.35 -0.7 468,482 - Psyr_0429 0.35 -0.7 468,482 - Psyr_0429 0.35 +0.8 468,482 - Psyr_0429 0.35 -1.9 468,482 - Psyr_0429 0.35 +0.3 468,482 - Psyr_0429 0.35 -0.8 468,482 - Psyr_0429 0.35 -1.7
Or see this region's nucleotide sequence