Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0358

Experiment: KB with Avocadyne 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0356 and Psyr_0357 are separated by 3 nucleotidesPsyr_0357 and Psyr_0358 overlap by 4 nucleotidesPsyr_0358 and Psyr_0359 are separated by 219 nucleotides Psyr_0356: Psyr_0356 - L-cystine ABC transporter ATP-binding protein / Diaminopimelate ABC transporter ATP-binding protein, at 381,987 to 382,730 _0356 Psyr_0357: Psyr_0357 - Diaminopimelate ABC transporter membrane protein / L-cystine ABC transporter membrane protein, at 382,734 to 383,402 _0357 Psyr_0358: Psyr_0358 - Diaminopimelate-binding protein / L-cystine-binding protein, at 383,399 to 384,196 _0358 Psyr_0359: Psyr_0359 - D-cysteine desulfhydrase, at 384,416 to 385,414 _0359 Position (kb) 383 384 385Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 382.725 kb on + strandat 382.725 kb on + strandat 382.726 kb on - strandat 382.726 kb on - strandat 382.813 kb on + strand, within Psyr_0357at 382.814 kb on - strand, within Psyr_0357at 382.814 kb on - strand, within Psyr_0357at 382.834 kb on + strand, within Psyr_0357at 382.834 kb on + strand, within Psyr_0357at 382.834 kb on + strand, within Psyr_0357at 382.834 kb on + strand, within Psyr_0357at 382.834 kb on + strand, within Psyr_0357at 382.834 kb on + strand, within Psyr_0357at 382.834 kb on + strand, within Psyr_0357at 382.835 kb on - strand, within Psyr_0357at 382.835 kb on - strand, within Psyr_0357at 382.835 kb on - strand, within Psyr_0357at 382.835 kb on - strand, within Psyr_0357at 382.835 kb on - strand, within Psyr_0357at 383.095 kb on + strand, within Psyr_0357at 383.096 kb on - strand, within Psyr_0357at 383.176 kb on + strand, within Psyr_0357at 383.176 kb on + strand, within Psyr_0357at 383.177 kb on - strand, within Psyr_0357at 383.177 kb on - strand, within Psyr_0357at 383.177 kb on - strand, within Psyr_0357at 383.177 kb on - strand, within Psyr_0357at 383.227 kb on + strand, within Psyr_0357at 383.227 kb on + strand, within Psyr_0357at 383.227 kb on + strand, within Psyr_0357at 383.227 kb on + strand, within Psyr_0357at 383.227 kb on + strand, within Psyr_0357at 383.227 kb on + strand, within Psyr_0357at 383.227 kb on + strand, within Psyr_0357at 383.227 kb on + strand, within Psyr_0357at 383.227 kb on + strand, within Psyr_0357at 383.228 kb on - strand, within Psyr_0357at 383.228 kb on - strand, within Psyr_0357at 383.228 kb on - strand, within Psyr_0357at 383.228 kb on - strand, within Psyr_0357at 383.228 kb on - strand, within Psyr_0357at 383.228 kb on - strand, within Psyr_0357at 383.228 kb on - strand, within Psyr_0357at 383.228 kb on - strand, within Psyr_0357at 383.331 kb on + strand, within Psyr_0357at 383.338 kb on + strandat 383.338 kb on + strandat 383.339 kb on - strandat 383.339 kb on - strandat 383.342 kb on - strandat 383.342 kb on - strandat 383.424 kb on + strandat 383.636 kb on + strand, within Psyr_0358at 383.636 kb on + strand, within Psyr_0358at 383.636 kb on + strand, within Psyr_0358at 383.637 kb on - strand, within Psyr_0358at 383.637 kb on - strand, within Psyr_0358at 383.637 kb on - strand, within Psyr_0358at 383.637 kb on - strand, within Psyr_0358at 383.637 kb on - strand, within Psyr_0358at 383.637 kb on - strand, within Psyr_0358at 383.673 kb on + strand, within Psyr_0358at 383.673 kb on + strand, within Psyr_0358at 383.674 kb on - strand, within Psyr_0358at 383.674 kb on - strand, within Psyr_0358at 383.721 kb on + strand, within Psyr_0358at 383.721 kb on + strand, within Psyr_0358at 383.721 kb on + strand, within Psyr_0358at 383.722 kb on - strand, within Psyr_0358at 383.722 kb on - strand, within Psyr_0358at 383.829 kb on + strand, within Psyr_0358at 383.829 kb on + strand, within Psyr_0358at 383.829 kb on + strand, within Psyr_0358at 383.829 kb on + strand, within Psyr_0358at 383.847 kb on + strand, within Psyr_0358at 383.847 kb on + strand, within Psyr_0358at 383.847 kb on + strand, within Psyr_0358at 383.847 kb on + strand, within Psyr_0358at 384.048 kb on + strand, within Psyr_0358at 384.048 kb on + strand, within Psyr_0358at 384.049 kb on - strand, within Psyr_0358at 384.049 kb on - strand, within Psyr_0358at 384.049 kb on - strand, within Psyr_0358at 384.049 kb on - strand, within Psyr_0358at 384.173 kb on - strandat 384.265 kb on + strandat 384.287 kb on + strandat 384.287 kb on + strandat 384.287 kb on + strandat 384.288 kb on - strandat 384.288 kb on - strandat 384.298 kb on + strandat 384.298 kb on + strandat 384.298 kb on + strandat 384.299 kb on - strandat 384.331 kb on + strandat 384.331 kb on + strandat 384.331 kb on + strandat 384.332 kb on - strandat 384.332 kb on - strandat 384.333 kb on + strandat 384.333 kb on + strandat 384.333 kb on + strandat 384.333 kb on + strandat 384.333 kb on + strandat 384.333 kb on + strandat 384.333 kb on + strandat 384.333 kb on + strandat 384.333 kb on + strandat 384.334 kb on - strandat 384.334 kb on - strandat 384.335 kb on + strandat 384.335 kb on + strandat 384.335 kb on + strandat 384.335 kb on + strandat 384.336 kb on - strandat 384.336 kb on - strandat 384.348 kb on - strandat 384.546 kb on + strand, within Psyr_0359at 384.639 kb on + strand, within Psyr_0359at 384.639 kb on + strand, within Psyr_0359at 384.639 kb on + strand, within Psyr_0359at 384.640 kb on - strand, within Psyr_0359at 384.909 kb on + strand, within Psyr_0359at 384.909 kb on + strand, within Psyr_0359at 384.910 kb on - strand, within Psyr_0359at 385.037 kb on + strand, within Psyr_0359at 385.037 kb on + strand, within Psyr_0359at 385.037 kb on + strand, within Psyr_0359at 385.037 kb on + strand, within Psyr_0359at 385.037 kb on + strand, within Psyr_0359at 385.038 kb on - strand, within Psyr_0359at 385.087 kb on - strand, within Psyr_0359

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Avocadyne 10 mM
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382,725 + +0.1
382,725 + +0.4
382,726 - +1.8
382,726 - -0.7
382,813 + Psyr_0357 0.12 +0.8
382,814 - Psyr_0357 0.12 +0.3
382,814 - Psyr_0357 0.12 -0.1
382,834 + Psyr_0357 0.15 +0.9
382,834 + Psyr_0357 0.15 -0.6
382,834 + Psyr_0357 0.15 -0.4
382,834 + Psyr_0357 0.15 +0.5
382,834 + Psyr_0357 0.15 -0.6
382,834 + Psyr_0357 0.15 +0.1
382,834 + Psyr_0357 0.15 +2.3
382,835 - Psyr_0357 0.15 -1.7
382,835 - Psyr_0357 0.15 +0.4
382,835 - Psyr_0357 0.15 +0.7
382,835 - Psyr_0357 0.15 +0.7
382,835 - Psyr_0357 0.15 -0.0
383,095 + Psyr_0357 0.54 +1.1
383,096 - Psyr_0357 0.54 +1.0
383,176 + Psyr_0357 0.66 -0.2
383,176 + Psyr_0357 0.66 -0.6
383,177 - Psyr_0357 0.66 -0.5
383,177 - Psyr_0357 0.66 +0.5
383,177 - Psyr_0357 0.66 -0.1
383,177 - Psyr_0357 0.66 +0.3
383,227 + Psyr_0357 0.74 +1.2
383,227 + Psyr_0357 0.74 +0.0
383,227 + Psyr_0357 0.74 +0.7
383,227 + Psyr_0357 0.74 -2.8
383,227 + Psyr_0357 0.74 +1.0
383,227 + Psyr_0357 0.74 -0.9
383,227 + Psyr_0357 0.74 +0.2
383,227 + Psyr_0357 0.74 +0.4
383,227 + Psyr_0357 0.74 +0.8
383,228 - Psyr_0357 0.74 +1.0
383,228 - Psyr_0357 0.74 -1.0
383,228 - Psyr_0357 0.74 +0.9
383,228 - Psyr_0357 0.74 +2.5
383,228 - Psyr_0357 0.74 +0.1
383,228 - Psyr_0357 0.74 +0.7
383,228 - Psyr_0357 0.74 +0.2
383,228 - Psyr_0357 0.74 +0.2
383,331 + Psyr_0357 0.89 -0.1
383,338 + +0.3
383,338 + +1.1
383,339 - +3.9
383,339 - -0.5
383,342 - +1.0
383,342 - -0.9
383,424 + +2.3
383,636 + Psyr_0358 0.30 -1.2
383,636 + Psyr_0358 0.30 +1.8
383,636 + Psyr_0358 0.30 +2.3
383,637 - Psyr_0358 0.30 +1.4
383,637 - Psyr_0358 0.30 +1.1
383,637 - Psyr_0358 0.30 +2.9
383,637 - Psyr_0358 0.30 +0.9
383,637 - Psyr_0358 0.30 -0.3
383,637 - Psyr_0358 0.30 +0.0
383,673 + Psyr_0358 0.34 +0.7
383,673 + Psyr_0358 0.34 +1.3
383,674 - Psyr_0358 0.34 -0.7
383,674 - Psyr_0358 0.34 +0.3
383,721 + Psyr_0358 0.40 +0.2
383,721 + Psyr_0358 0.40 +1.3
383,721 + Psyr_0358 0.40 -0.8
383,722 - Psyr_0358 0.40 -2.4
383,722 - Psyr_0358 0.40 -2.4
383,829 + Psyr_0358 0.54 -1.0
383,829 + Psyr_0358 0.54 -1.2
383,829 + Psyr_0358 0.54 +1.8
383,829 + Psyr_0358 0.54 -1.3
383,847 + Psyr_0358 0.56 +1.1
383,847 + Psyr_0358 0.56 +0.3
383,847 + Psyr_0358 0.56 +0.6
383,847 + Psyr_0358 0.56 -0.6
384,048 + Psyr_0358 0.81 +1.0
384,048 + Psyr_0358 0.81 +1.0
384,049 - Psyr_0358 0.81 -0.2
384,049 - Psyr_0358 0.81 +0.7
384,049 - Psyr_0358 0.81 +2.3
384,049 - Psyr_0358 0.81 +0.6
384,173 - +0.9
384,265 + +0.2
384,287 + +3.6
384,287 + -2.1
384,287 + +0.3
384,288 - -1.2
384,288 - +0.2
384,298 + +0.3
384,298 + +0.1
384,298 + -1.6
384,299 - -1.0
384,331 + +0.4
384,331 + +0.4
384,331 + -0.5
384,332 - -1.6
384,332 - +0.0
384,333 + +0.5
384,333 + +0.5
384,333 + -0.6
384,333 + -0.2
384,333 + +0.3
384,333 + -1.0
384,333 + +2.1
384,333 + +0.5
384,333 + +0.5
384,334 - +0.2
384,334 - -0.9
384,335 + +1.4
384,335 + -0.5
384,335 + -0.3
384,335 + -0.0
384,336 - +2.3
384,336 - -0.7
384,348 - -0.9
384,546 + Psyr_0359 0.13 +0.7
384,639 + Psyr_0359 0.22 +2.9
384,639 + Psyr_0359 0.22 +4.3
384,639 + Psyr_0359 0.22 +0.6
384,640 - Psyr_0359 0.22 -0.4
384,909 + Psyr_0359 0.49 -0.2
384,909 + Psyr_0359 0.49 -0.3
384,910 - Psyr_0359 0.49 +0.6
385,037 + Psyr_0359 0.62 +1.1
385,037 + Psyr_0359 0.62 -0.4
385,037 + Psyr_0359 0.62 -1.4
385,037 + Psyr_0359 0.62 -1.0
385,037 + Psyr_0359 0.62 -0.2
385,038 - Psyr_0359 0.62 -0.2
385,087 - Psyr_0359 0.67 -1.1

Or see this region's nucleotide sequence