Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_788

Experiment: LB control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_786 and PfGW456L13_787 are separated by 106 nucleotidesPfGW456L13_787 and PfGW456L13_788 are separated by 81 nucleotidesPfGW456L13_788 and PfGW456L13_789 are separated by 24 nucleotidesPfGW456L13_789 and PfGW456L13_790 overlap by 36 nucleotidesPfGW456L13_790 and PfGW456L13_791 overlap by 14 nucleotides PfGW456L13_786 - Sodium/glutamate symport protein, at 889,671 to 890,879 _786 PfGW456L13_787 - Exodeoxyribonuclease III (EC 3.1.11.2), at 890,986 to 891,765 _787 PfGW456L13_788 - Orotate phosphoribosyltransferase (EC 2.4.2.10), at 891,847 to 892,491 _788 PfGW456L13_789 - hypothetical protein, at 892,516 to 892,659 _789 PfGW456L13_790 - hypothetical protein, at 892,624 to 893,007 _790 PfGW456L13_791 - hypothetical protein, at 892,994 to 893,566 _791 Position (kb) 891 892 893Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 890.847 kb on + strandat 890.847 kb on + strandat 890.847 kb on + strandat 890.847 kb on + strandat 890.847 kb on + strandat 890.848 kb on - strandat 890.848 kb on - strandat 890.848 kb on - strandat 890.848 kb on - strandat 890.848 kb on - strandat 890.906 kb on + strandat 890.907 kb on - strandat 890.907 kb on - strandat 890.915 kb on + strandat 890.915 kb on + strandat 890.928 kb on + strandat 890.929 kb on - strandat 890.929 kb on - strandat 890.929 kb on - strandat 890.966 kb on - strandat 890.987 kb on + strandat 890.987 kb on + strandat 890.987 kb on + strandat 890.988 kb on - strandat 890.988 kb on - strandat 890.988 kb on - strandat 890.988 kb on - strandat 891.009 kb on - strandat 891.009 kb on - strandat 891.070 kb on + strand, within PfGW456L13_787at 891.071 kb on - strand, within PfGW456L13_787at 891.105 kb on - strand, within PfGW456L13_787at 891.164 kb on + strand, within PfGW456L13_787at 891.164 kb on + strand, within PfGW456L13_787at 891.165 kb on - strand, within PfGW456L13_787at 891.165 kb on - strand, within PfGW456L13_787at 891.165 kb on - strand, within PfGW456L13_787at 891.206 kb on + strand, within PfGW456L13_787at 891.207 kb on - strand, within PfGW456L13_787at 891.318 kb on - strand, within PfGW456L13_787at 891.332 kb on + strand, within PfGW456L13_787at 891.332 kb on + strand, within PfGW456L13_787at 891.332 kb on + strand, within PfGW456L13_787at 891.332 kb on + strand, within PfGW456L13_787at 891.332 kb on + strand, within PfGW456L13_787at 891.332 kb on + strand, within PfGW456L13_787at 891.333 kb on - strand, within PfGW456L13_787at 891.333 kb on - strand, within PfGW456L13_787at 891.333 kb on - strand, within PfGW456L13_787at 891.333 kb on - strand, within PfGW456L13_787at 891.333 kb on - strand, within PfGW456L13_787at 891.333 kb on - strand, within PfGW456L13_787at 891.371 kb on + strand, within PfGW456L13_787at 891.372 kb on - strand, within PfGW456L13_787at 891.372 kb on - strand, within PfGW456L13_787at 891.456 kb on + strand, within PfGW456L13_787at 891.456 kb on + strand, within PfGW456L13_787at 891.457 kb on - strand, within PfGW456L13_787at 891.486 kb on - strand, within PfGW456L13_787at 891.555 kb on - strand, within PfGW456L13_787at 891.599 kb on + strand, within PfGW456L13_787at 891.600 kb on - strand, within PfGW456L13_787at 891.600 kb on - strand, within PfGW456L13_787at 891.600 kb on - strand, within PfGW456L13_787at 891.600 kb on - strand, within PfGW456L13_787at 891.600 kb on - strand, within PfGW456L13_787at 891.600 kb on - strand, within PfGW456L13_787at 891.608 kb on + strand, within PfGW456L13_787at 891.608 kb on + strand, within PfGW456L13_787at 891.608 kb on + strand, within PfGW456L13_787at 891.609 kb on - strand, within PfGW456L13_787at 891.609 kb on - strand, within PfGW456L13_787at 891.609 kb on - strand, within PfGW456L13_787at 891.609 kb on - strand, within PfGW456L13_787at 891.735 kb on + strandat 891.793 kb on - strandat 891.793 kb on - strandat 891.812 kb on + strandat 891.812 kb on + strandat 891.812 kb on + strandat 891.812 kb on + strandat 891.812 kb on + strandat 891.812 kb on + strandat 891.812 kb on + strandat 891.812 kb on + strandat 891.816 kb on + strandat 891.816 kb on + strandat 891.831 kb on + strandat 891.944 kb on - strand, within PfGW456L13_788at 892.506 kb on - strandat 892.506 kb on - strandat 892.506 kb on - strandat 892.506 kb on - strandat 892.599 kb on + strand, within PfGW456L13_789at 892.599 kb on + strand, within PfGW456L13_789at 892.600 kb on - strand, within PfGW456L13_789at 892.600 kb on - strand, within PfGW456L13_789at 892.600 kb on - strand, within PfGW456L13_789at 892.600 kb on - strand, within PfGW456L13_789at 892.708 kb on + strand, within PfGW456L13_790at 892.708 kb on + strand, within PfGW456L13_790at 892.708 kb on + strand, within PfGW456L13_790at 892.709 kb on - strand, within PfGW456L13_790at 892.709 kb on - strand, within PfGW456L13_790at 892.715 kb on + strand, within PfGW456L13_790at 892.716 kb on - strand, within PfGW456L13_790at 892.797 kb on - strand, within PfGW456L13_790at 892.797 kb on - strand, within PfGW456L13_790at 893.169 kb on + strand, within PfGW456L13_791at 893.169 kb on + strand, within PfGW456L13_791at 893.169 kb on + strand, within PfGW456L13_791at 893.170 kb on - strand, within PfGW456L13_791at 893.312 kb on + strand, within PfGW456L13_791at 893.346 kb on + strand, within PfGW456L13_791at 893.346 kb on + strand, within PfGW456L13_791at 893.346 kb on + strand, within PfGW456L13_791at 893.347 kb on - strand, within PfGW456L13_791at 893.347 kb on - strand, within PfGW456L13_791at 893.347 kb on - strand, within PfGW456L13_791at 893.347 kb on - strand, within PfGW456L13_791at 893.347 kb on - strand, within PfGW456L13_791at 893.347 kb on - strand, within PfGW456L13_791at 893.361 kb on + strand, within PfGW456L13_791at 893.361 kb on + strand, within PfGW456L13_791at 893.361 kb on + strand, within PfGW456L13_791at 893.361 kb on + strand, within PfGW456L13_791at 893.362 kb on - strand, within PfGW456L13_791at 893.430 kb on + strand, within PfGW456L13_791at 893.430 kb on + strand, within PfGW456L13_791at 893.430 kb on + strand, within PfGW456L13_791at 893.430 kb on + strand, within PfGW456L13_791at 893.431 kb on - strand, within PfGW456L13_791at 893.431 kb on - strand, within PfGW456L13_791at 893.431 kb on - strand, within PfGW456L13_791at 893.453 kb on + strand, within PfGW456L13_791at 893.455 kb on + strand, within PfGW456L13_791at 893.455 kb on + strand, within PfGW456L13_791at 893.455 kb on + strand, within PfGW456L13_791at 893.455 kb on + strand, within PfGW456L13_791at 893.455 kb on + strand, within PfGW456L13_791at 893.455 kb on + strand, within PfGW456L13_791at 893.455 kb on + strand, within PfGW456L13_791at 893.455 kb on + strand, within PfGW456L13_791at 893.455 kb on + strand, within PfGW456L13_791at 893.455 kb on + strand, within PfGW456L13_791at 893.455 kb on + strand, within PfGW456L13_791at 893.455 kb on + strand, within PfGW456L13_791at 893.455 kb on + strand, within PfGW456L13_791at 893.456 kb on - strand, within PfGW456L13_791at 893.456 kb on - strand, within PfGW456L13_791at 893.456 kb on - strand, within PfGW456L13_791at 893.456 kb on - strand, within PfGW456L13_791at 893.456 kb on - strand, within PfGW456L13_791at 893.456 kb on - strand, within PfGW456L13_791at 893.456 kb on - strand, within PfGW456L13_791at 893.456 kb on - strand, within PfGW456L13_791at 893.456 kb on - strand, within PfGW456L13_791at 893.456 kb on - strand, within PfGW456L13_791at 893.456 kb on - strand, within PfGW456L13_791at 893.456 kb on - strand, within PfGW456L13_791at 893.462 kb on + strand, within PfGW456L13_791at 893.463 kb on - strand, within PfGW456L13_791

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Per-strain Table

Position Strand Gene LocusTag Fraction LB control
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890,847 + -0.2
890,847 + +0.2
890,847 + -0.2
890,847 + +0.3
890,847 + -1.3
890,848 - -0.3
890,848 - -0.2
890,848 - +0.5
890,848 - -0.5
890,848 - +0.4
890,906 + -0.9
890,907 - +0.8
890,907 - -0.3
890,915 + +0.4
890,915 + -0.6
890,928 + -0.4
890,929 - +0.3
890,929 - -0.7
890,929 - +0.2
890,966 - -1.3
890,987 + -0.3
890,987 + -1.6
890,987 + -0.6
890,988 - -0.4
890,988 - -0.9
890,988 - -0.2
890,988 - -0.8
891,009 - -1.9
891,009 - -1.3
891,070 + PfGW456L13_787 0.11 -1.7
891,071 - PfGW456L13_787 0.11 -2.5
891,105 - PfGW456L13_787 0.15 -1.7
891,164 + PfGW456L13_787 0.23 -0.0
891,164 + PfGW456L13_787 0.23 -0.7
891,165 - PfGW456L13_787 0.23 -1.4
891,165 - PfGW456L13_787 0.23 -1.3
891,165 - PfGW456L13_787 0.23 -1.7
891,206 + PfGW456L13_787 0.28 -1.7
891,207 - PfGW456L13_787 0.28 -1.2
891,318 - PfGW456L13_787 0.43 -0.9
891,332 + PfGW456L13_787 0.44 -2.2
891,332 + PfGW456L13_787 0.44 -1.2
891,332 + PfGW456L13_787 0.44 -2.6
891,332 + PfGW456L13_787 0.44 -2.4
891,332 + PfGW456L13_787 0.44 -2.0
891,332 + PfGW456L13_787 0.44 -1.7
891,333 - PfGW456L13_787 0.44 -1.8
891,333 - PfGW456L13_787 0.44 -0.9
891,333 - PfGW456L13_787 0.44 -1.5
891,333 - PfGW456L13_787 0.44 -1.2
891,333 - PfGW456L13_787 0.44 -2.3
891,333 - PfGW456L13_787 0.44 -2.3
891,371 + PfGW456L13_787 0.49 -0.3
891,372 - PfGW456L13_787 0.49 -2.6
891,372 - PfGW456L13_787 0.49 -2.3
891,456 + PfGW456L13_787 0.60 -1.7
891,456 + PfGW456L13_787 0.60 +0.1
891,457 - PfGW456L13_787 0.60 -2.5
891,486 - PfGW456L13_787 0.64 -2.2
891,555 - PfGW456L13_787 0.73 -2.7
891,599 + PfGW456L13_787 0.79 -1.2
891,600 - PfGW456L13_787 0.79 -1.9
891,600 - PfGW456L13_787 0.79 -1.8
891,600 - PfGW456L13_787 0.79 -1.9
891,600 - PfGW456L13_787 0.79 -1.9
891,600 - PfGW456L13_787 0.79 -2.0
891,600 - PfGW456L13_787 0.79 -3.0
891,608 + PfGW456L13_787 0.80 +0.3
891,608 + PfGW456L13_787 0.80 -1.9
891,608 + PfGW456L13_787 0.80 -0.9
891,609 - PfGW456L13_787 0.80 -0.7
891,609 - PfGW456L13_787 0.80 +0.7
891,609 - PfGW456L13_787 0.80 -0.2
891,609 - PfGW456L13_787 0.80 -2.2
891,735 + -1.9
891,793 - -0.8
891,793 - +1.5
891,812 + -2.2
891,812 + -1.4
891,812 + -2.0
891,812 + -2.0
891,812 + -1.0
891,812 + -1.1
891,812 + -2.6
891,812 + -2.4
891,816 + -0.8
891,816 + -1.0
891,831 + -0.5
891,944 - PfGW456L13_788 0.15 +0.1
892,506 - +0.6
892,506 - -0.3
892,506 - -0.7
892,506 - -0.6
892,599 + PfGW456L13_789 0.58 -0.5
892,599 + PfGW456L13_789 0.58 -1.2
892,600 - PfGW456L13_789 0.58 +0.2
892,600 - PfGW456L13_789 0.58 +0.3
892,600 - PfGW456L13_789 0.58 -0.3
892,600 - PfGW456L13_789 0.58 -0.0
892,708 + PfGW456L13_790 0.22 -0.8
892,708 + PfGW456L13_790 0.22 -0.1
892,708 + PfGW456L13_790 0.22 -2.3
892,709 - PfGW456L13_790 0.22 +0.1
892,709 - PfGW456L13_790 0.22 -0.7
892,715 + PfGW456L13_790 0.24 -1.6
892,716 - PfGW456L13_790 0.24 -0.2
892,797 - PfGW456L13_790 0.45 -0.5
892,797 - PfGW456L13_790 0.45 +0.2
893,169 + PfGW456L13_791 0.31 +0.4
893,169 + PfGW456L13_791 0.31 +0.3
893,169 + PfGW456L13_791 0.31 -0.0
893,170 - PfGW456L13_791 0.31 -0.7
893,312 + PfGW456L13_791 0.55 +0.5
893,346 + PfGW456L13_791 0.61 +0.9
893,346 + PfGW456L13_791 0.61 -0.5
893,346 + PfGW456L13_791 0.61 -0.2
893,347 - PfGW456L13_791 0.62 -0.4
893,347 - PfGW456L13_791 0.62 -0.1
893,347 - PfGW456L13_791 0.62 -0.5
893,347 - PfGW456L13_791 0.62 -0.4
893,347 - PfGW456L13_791 0.62 +1.1
893,347 - PfGW456L13_791 0.62 -0.6
893,361 + PfGW456L13_791 0.64 -1.3
893,361 + PfGW456L13_791 0.64 -0.1
893,361 + PfGW456L13_791 0.64 -0.4
893,361 + PfGW456L13_791 0.64 +0.0
893,362 - PfGW456L13_791 0.64 -0.0
893,430 + PfGW456L13_791 0.76 -0.7
893,430 + PfGW456L13_791 0.76 -0.4
893,430 + PfGW456L13_791 0.76 -0.4
893,430 + PfGW456L13_791 0.76 -1.1
893,431 - PfGW456L13_791 0.76 -0.3
893,431 - PfGW456L13_791 0.76 +0.8
893,431 - PfGW456L13_791 0.76 +0.5
893,453 + PfGW456L13_791 0.80 -0.2
893,455 + PfGW456L13_791 0.80 -1.9
893,455 + PfGW456L13_791 0.80 -0.6
893,455 + PfGW456L13_791 0.80 -0.3
893,455 + PfGW456L13_791 0.80 -0.1
893,455 + PfGW456L13_791 0.80 -0.3
893,455 + PfGW456L13_791 0.80 -0.4
893,455 + PfGW456L13_791 0.80 +0.5
893,455 + PfGW456L13_791 0.80 -0.1
893,455 + PfGW456L13_791 0.80 +0.4
893,455 + PfGW456L13_791 0.80 -0.4
893,455 + PfGW456L13_791 0.80 -0.6
893,455 + PfGW456L13_791 0.80 -0.1
893,455 + PfGW456L13_791 0.80 +2.9
893,456 - PfGW456L13_791 0.81 -0.1
893,456 - PfGW456L13_791 0.81 +0.2
893,456 - PfGW456L13_791 0.81 -0.1
893,456 - PfGW456L13_791 0.81 -0.0
893,456 - PfGW456L13_791 0.81 -0.6
893,456 - PfGW456L13_791 0.81 +0.0
893,456 - PfGW456L13_791 0.81 -0.5
893,456 - PfGW456L13_791 0.81 -0.0
893,456 - PfGW456L13_791 0.81 +0.3
893,456 - PfGW456L13_791 0.81 -0.5
893,456 - PfGW456L13_791 0.81 -0.7
893,456 - PfGW456L13_791 0.81 -0.8
893,462 + PfGW456L13_791 0.82 -0.0
893,463 - PfGW456L13_791 0.82 -0.1

Or see this region's nucleotide sequence