Experiment: LB control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_588 and PfGW456L13_589 overlap by 4 nucleotides PfGW456L13_589 and PfGW456L13_590 are separated by 14 nucleotides PfGW456L13_590 and PfGW456L13_591 are separated by 199 nucleotides PfGW456L13_591 and PfGW456L13_592 are separated by 45 nucleotides
PfGW456L13_588 - GGDEF domain protein, at 681,205 to 683,163
_588
PfGW456L13_589 - Endonuclease/exonuclease/phosphatase family protein, at 683,160 to 684,038
_589
PfGW456L13_590 - Periplasmic thiol:disulfide interchange protein DsbA, at 684,053 to 684,694
_590
PfGW456L13_591 - Cytochrome c4, at 684,894 to 685,523
_591
PfGW456L13_592 - Cytochrome c5, at 685,569 to 685,685
_592
Position (kb) 684
685 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 683.129 kb on + strand at 683.129 kb on + strand at 683.130 kb on - strand at 683.130 kb on - strand at 683.130 kb on - strand at 683.130 kb on - strand at 683.130 kb on - strand at 683.130 kb on - strand at 683.319 kb on - strand, within PfGW456L13_589 at 683.462 kb on - strand, within PfGW456L13_589 at 683.462 kb on - strand, within PfGW456L13_589 at 683.462 kb on - strand, within PfGW456L13_589 at 683.462 kb on - strand, within PfGW456L13_589 at 683.485 kb on + strand, within PfGW456L13_589 at 683.486 kb on - strand, within PfGW456L13_589 at 683.486 kb on - strand, within PfGW456L13_589 at 683.486 kb on - strand, within PfGW456L13_589 at 683.681 kb on + strand, within PfGW456L13_589 at 683.681 kb on + strand, within PfGW456L13_589 at 683.681 kb on + strand, within PfGW456L13_589 at 683.681 kb on + strand, within PfGW456L13_589 at 683.698 kb on + strand, within PfGW456L13_589 at 683.699 kb on - strand, within PfGW456L13_589 at 683.749 kb on + strand, within PfGW456L13_589 at 683.749 kb on + strand, within PfGW456L13_589 at 683.808 kb on + strand, within PfGW456L13_589 at 683.884 kb on + strand, within PfGW456L13_589 at 683.885 kb on - strand, within PfGW456L13_589 at 683.885 kb on - strand, within PfGW456L13_589 at 684.024 kb on - strand at 684.054 kb on + strand at 684.054 kb on + strand at 684.054 kb on + strand at 684.055 kb on - strand at 684.055 kb on - strand at 684.282 kb on - strand, within PfGW456L13_590 at 684.699 kb on + strand at 684.700 kb on - strand at 684.700 kb on - strand at 684.767 kb on + strand at 684.767 kb on + strand at 684.767 kb on + strand at 684.767 kb on + strand at 684.768 kb on - strand at 684.768 kb on - strand at 684.768 kb on - strand at 684.768 kb on - strand at 684.816 kb on + strand at 684.816 kb on + strand at 684.816 kb on + strand at 684.816 kb on + strand at 684.816 kb on + strand at 684.817 kb on - strand at 684.817 kb on - strand at 684.817 kb on - strand at 684.817 kb on - strand at 684.818 kb on + strand at 684.819 kb on - strand at 684.819 kb on - strand at 684.819 kb on - strand at 684.819 kb on - strand at 684.835 kb on + strand at 684.835 kb on + strand at 684.895 kb on + strand at 684.896 kb on - strand at 684.913 kb on + strand at 684.914 kb on - strand at 685.039 kb on + strand, within PfGW456L13_591 at 685.040 kb on - strand, within PfGW456L13_591 at 685.040 kb on - strand, within PfGW456L13_591 at 685.040 kb on - strand, within PfGW456L13_591 at 685.222 kb on + strand, within PfGW456L13_591 at 685.331 kb on - strand, within PfGW456L13_591 at 685.449 kb on + strand, within PfGW456L13_591 at 685.449 kb on + strand, within PfGW456L13_591 at 685.449 kb on + strand, within PfGW456L13_591 at 685.450 kb on - strand, within PfGW456L13_591 at 685.450 kb on - strand, within PfGW456L13_591 at 685.529 kb on - strand at 685.537 kb on + strand at 685.537 kb on + strand at 685.538 kb on - strand at 685.538 kb on - strand at 685.538 kb on - strand at 685.544 kb on - strand at 685.550 kb on + strand at 685.557 kb on + strand at 685.557 kb on + strand at 685.558 kb on - strand at 685.570 kb on + strand at 685.685 kb on + strand at 685.685 kb on + strand at 685.686 kb on - strand at 685.686 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB control remove 683,129 + +0.4 683,129 + -0.4 683,130 - +1.0 683,130 - +0.1 683,130 - -1.2 683,130 - +0.5 683,130 - -0.0 683,130 - +0.1 683,319 - PfGW456L13_589 0.18 +0.3 683,462 - PfGW456L13_589 0.34 -2.3 683,462 - PfGW456L13_589 0.34 +0.4 683,462 - PfGW456L13_589 0.34 +0.3 683,462 - PfGW456L13_589 0.34 -0.1 683,485 + PfGW456L13_589 0.37 -0.7 683,486 - PfGW456L13_589 0.37 +0.3 683,486 - PfGW456L13_589 0.37 -0.1 683,486 - PfGW456L13_589 0.37 -0.5 683,681 + PfGW456L13_589 0.59 -0.7 683,681 + PfGW456L13_589 0.59 -0.3 683,681 + PfGW456L13_589 0.59 -0.2 683,681 + PfGW456L13_589 0.59 -0.2 683,698 + PfGW456L13_589 0.61 +0.4 683,699 - PfGW456L13_589 0.61 +0.3 683,749 + PfGW456L13_589 0.67 -0.5 683,749 + PfGW456L13_589 0.67 -0.1 683,808 + PfGW456L13_589 0.74 -0.6 683,884 + PfGW456L13_589 0.82 +0.6 683,885 - PfGW456L13_589 0.82 -0.2 683,885 - PfGW456L13_589 0.82 -3.7 684,024 - +0.7 684,054 + +0.4 684,054 + +0.8 684,054 + -0.2 684,055 - -0.5 684,055 - +1.2 684,282 - PfGW456L13_590 0.36 -1.3 684,699 + -0.7 684,700 - -0.9 684,700 - +0.3 684,767 + -0.2 684,767 + +0.5 684,767 + +0.3 684,767 + -0.4 684,768 - -0.4 684,768 - +0.3 684,768 - +0.5 684,768 - +0.3 684,816 + -0.2 684,816 + +0.3 684,816 + +0.3 684,816 + -0.4 684,816 + +0.0 684,817 - +0.3 684,817 - +0.1 684,817 - +1.1 684,817 - +0.0 684,818 + +1.1 684,819 - -0.5 684,819 - -0.1 684,819 - +0.2 684,819 - +0.6 684,835 + -0.0 684,835 + -0.8 684,895 + -1.3 684,896 - -0.2 684,913 + +0.9 684,914 - +2.2 685,039 + PfGW456L13_591 0.23 +1.5 685,040 - PfGW456L13_591 0.23 +0.6 685,040 - PfGW456L13_591 0.23 +0.6 685,040 - PfGW456L13_591 0.23 -0.9 685,222 + PfGW456L13_591 0.52 +1.6 685,331 - PfGW456L13_591 0.69 +0.6 685,449 + PfGW456L13_591 0.88 -1.2 685,449 + PfGW456L13_591 0.88 +1.2 685,449 + PfGW456L13_591 0.88 +0.6 685,450 - PfGW456L13_591 0.88 -0.9 685,450 - PfGW456L13_591 0.88 +1.1 685,529 - +0.4 685,537 + -0.9 685,537 + -0.7 685,538 - +1.0 685,538 - +0.5 685,538 - +0.5 685,544 - +1.0 685,550 + +1.6 685,557 + +2.4 685,557 + +1.6 685,558 - -0.5 685,570 + +0.3 685,685 + +0.3 685,685 + +1.2 685,686 - +0.2 685,686 - -0.4
Or see this region's nucleotide sequence