Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1271

Experiment: KB with Lawsone 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1269 and Psyr_1270 are separated by 5 nucleotidesPsyr_1270 and Psyr_1271 are separated by 121 nucleotidesPsyr_1271 and Psyr_1272 are separated by 61 nucleotidesPsyr_1272 and Psyr_1273 are separated by 150 nucleotides Psyr_1269: Psyr_1269 - phosphoribosylformylglycinamidine synthase, at 1,433,337 to 1,437,233 _1269 Psyr_1270: Psyr_1270 - conserved hypothetical protein, at 1,437,239 to 1,437,550 _1270 Psyr_1271: Psyr_1271 - ErfK/YbiS/YcfS/YnhG, at 1,437,672 to 1,438,235 _1271 Psyr_1272: Psyr_1272 - NUDIX hydrolase, at 1,438,297 to 1,438,848 _1272 Psyr_1273: Psyr_1273 - NUDIX hydrolase, at 1,438,999 to 1,439,595 _1273 Position (kb) 1437 1438 1439Strain fitness (log2 ratio) -2 -1 0 1 2at 1437.231 kb on + strandat 1437.231 kb on + strandat 1437.232 kb on - strandat 1437.232 kb on - strandat 1437.242 kb on + strandat 1437.242 kb on + strandat 1437.242 kb on + strandat 1437.243 kb on - strandat 1437.243 kb on - strandat 1437.243 kb on - strandat 1437.330 kb on - strand, within Psyr_1270at 1437.398 kb on - strand, within Psyr_1270at 1437.528 kb on + strandat 1437.528 kb on + strandat 1437.529 kb on - strandat 1437.529 kb on - strandat 1437.529 kb on - strandat 1437.529 kb on - strandat 1437.717 kb on + strandat 1437.717 kb on + strandat 1437.718 kb on - strandat 1437.782 kb on - strand, within Psyr_1271at 1437.782 kb on - strand, within Psyr_1271at 1437.910 kb on + strand, within Psyr_1271at 1437.910 kb on + strand, within Psyr_1271at 1437.910 kb on + strand, within Psyr_1271at 1437.910 kb on + strand, within Psyr_1271at 1437.911 kb on - strand, within Psyr_1271at 1437.911 kb on - strand, within Psyr_1271at 1437.911 kb on - strand, within Psyr_1271at 1437.911 kb on - strand, within Psyr_1271at 1437.911 kb on - strand, within Psyr_1271at 1437.911 kb on - strand, within Psyr_1271at 1437.911 kb on - strand, within Psyr_1271at 1437.943 kb on + strand, within Psyr_1271at 1437.943 kb on + strand, within Psyr_1271at 1437.944 kb on - strand, within Psyr_1271at 1438.253 kb on + strandat 1438.253 kb on + strandat 1438.254 kb on - strandat 1438.254 kb on - strandat 1438.254 kb on - strandat 1438.255 kb on - strandat 1438.338 kb on + strandat 1438.338 kb on + strandat 1438.379 kb on + strand, within Psyr_1272at 1438.379 kb on + strand, within Psyr_1272at 1438.379 kb on + strand, within Psyr_1272at 1438.379 kb on + strand, within Psyr_1272at 1438.379 kb on + strand, within Psyr_1272at 1438.379 kb on + strand, within Psyr_1272at 1438.380 kb on - strand, within Psyr_1272at 1438.380 kb on - strand, within Psyr_1272at 1438.380 kb on - strand, within Psyr_1272at 1438.380 kb on - strand, within Psyr_1272at 1438.380 kb on - strand, within Psyr_1272at 1438.384 kb on + strand, within Psyr_1272at 1438.384 kb on + strand, within Psyr_1272at 1438.385 kb on - strand, within Psyr_1272at 1438.385 kb on - strand, within Psyr_1272at 1438.385 kb on - strand, within Psyr_1272at 1438.385 kb on - strand, within Psyr_1272at 1438.505 kb on + strand, within Psyr_1272at 1438.505 kb on + strand, within Psyr_1272at 1438.506 kb on - strand, within Psyr_1272at 1438.506 kb on - strand, within Psyr_1272at 1438.527 kb on + strand, within Psyr_1272at 1438.550 kb on + strand, within Psyr_1272at 1438.550 kb on + strand, within Psyr_1272at 1438.550 kb on + strand, within Psyr_1272at 1438.551 kb on - strand, within Psyr_1272at 1438.551 kb on - strand, within Psyr_1272at 1438.749 kb on - strand, within Psyr_1272at 1438.779 kb on - strand, within Psyr_1272at 1438.779 kb on - strand, within Psyr_1272at 1438.779 kb on - strand, within Psyr_1272at 1438.779 kb on - strand, within Psyr_1272at 1439.012 kb on + strandat 1439.012 kb on + strandat 1439.013 kb on - strandat 1439.013 kb on - strandat 1439.013 kb on - strandat 1439.013 kb on - strandat 1439.013 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Lawsone 10 mM
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1,437,231 + +0.3
1,437,231 + +0.8
1,437,232 - +1.9
1,437,232 - +1.6
1,437,242 + +1.2
1,437,242 + -1.9
1,437,242 + +1.2
1,437,243 - +1.4
1,437,243 - +1.0
1,437,243 - +0.3
1,437,330 - Psyr_1270 0.29 +1.5
1,437,398 - Psyr_1270 0.51 -0.5
1,437,528 + -0.8
1,437,528 + -0.2
1,437,529 - -0.4
1,437,529 - +0.1
1,437,529 - -0.5
1,437,529 - -1.8
1,437,717 + +0.3
1,437,717 + -0.3
1,437,718 - +0.3
1,437,782 - Psyr_1271 0.20 -0.3
1,437,782 - Psyr_1271 0.20 -1.0
1,437,910 + Psyr_1271 0.42 -0.8
1,437,910 + Psyr_1271 0.42 -0.8
1,437,910 + Psyr_1271 0.42 -0.3
1,437,910 + Psyr_1271 0.42 -1.1
1,437,911 - Psyr_1271 0.42 +0.5
1,437,911 - Psyr_1271 0.42 -0.2
1,437,911 - Psyr_1271 0.42 +0.9
1,437,911 - Psyr_1271 0.42 +0.8
1,437,911 - Psyr_1271 0.42 +0.7
1,437,911 - Psyr_1271 0.42 +0.6
1,437,911 - Psyr_1271 0.42 -0.7
1,437,943 + Psyr_1271 0.48 +1.3
1,437,943 + Psyr_1271 0.48 +0.3
1,437,944 - Psyr_1271 0.48 -0.4
1,438,253 + +0.0
1,438,253 + -1.7
1,438,254 - -0.2
1,438,254 - -0.7
1,438,254 - +0.4
1,438,255 - -1.4
1,438,338 + -1.0
1,438,338 + -1.7
1,438,379 + Psyr_1272 0.15 +0.1
1,438,379 + Psyr_1272 0.15 -0.1
1,438,379 + Psyr_1272 0.15 +1.6
1,438,379 + Psyr_1272 0.15 -2.6
1,438,379 + Psyr_1272 0.15 +2.1
1,438,379 + Psyr_1272 0.15 +0.8
1,438,380 - Psyr_1272 0.15 +1.4
1,438,380 - Psyr_1272 0.15 -1.4
1,438,380 - Psyr_1272 0.15 +0.1
1,438,380 - Psyr_1272 0.15 +0.9
1,438,380 - Psyr_1272 0.15 -0.2
1,438,384 + Psyr_1272 0.16 +1.6
1,438,384 + Psyr_1272 0.16 -1.6
1,438,385 - Psyr_1272 0.16 +0.7
1,438,385 - Psyr_1272 0.16 -1.3
1,438,385 - Psyr_1272 0.16 +0.1
1,438,385 - Psyr_1272 0.16 -0.9
1,438,505 + Psyr_1272 0.38 +1.1
1,438,505 + Psyr_1272 0.38 -2.3
1,438,506 - Psyr_1272 0.38 -0.7
1,438,506 - Psyr_1272 0.38 -2.0
1,438,527 + Psyr_1272 0.42 -0.2
1,438,550 + Psyr_1272 0.46 -0.3
1,438,550 + Psyr_1272 0.46 -0.3
1,438,550 + Psyr_1272 0.46 +1.7
1,438,551 - Psyr_1272 0.46 -0.4
1,438,551 - Psyr_1272 0.46 -0.2
1,438,749 - Psyr_1272 0.82 -0.8
1,438,779 - Psyr_1272 0.87 -0.9
1,438,779 - Psyr_1272 0.87 -1.4
1,438,779 - Psyr_1272 0.87 -0.8
1,438,779 - Psyr_1272 0.87 +0.5
1,439,012 + -1.6
1,439,012 + +1.1
1,439,013 - -0.1
1,439,013 - -0.9
1,439,013 - -0.1
1,439,013 - +0.7
1,439,013 - +0.2

Or see this region's nucleotide sequence