Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1702

Experiment: KB with Diallyl sulfide 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1701 and Psyr_1702 are separated by 433 nucleotidesPsyr_1702 and Psyr_1703 are separated by 151 nucleotides Psyr_1701: Psyr_1701 - membrane protein, putative, at 1,909,129 to 1,911,519 _1701 Psyr_1702: Psyr_1702 - regulatory protein, LuxR, at 1,911,953 to 1,912,669 _1702 Psyr_1703: Psyr_1703 - Fatty acid desaturase, at 1,912,821 to 1,913,873 _1703 Position (kb) 1911 1912 1913Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1911.031 kb on + strand, within Psyr_1701at 1911.031 kb on + strand, within Psyr_1701at 1911.031 kb on + strand, within Psyr_1701at 1911.032 kb on - strand, within Psyr_1701at 1911.147 kb on - strand, within Psyr_1701at 1911.220 kb on + strand, within Psyr_1701at 1911.220 kb on + strand, within Psyr_1701at 1911.220 kb on + strand, within Psyr_1701at 1911.220 kb on + strand, within Psyr_1701at 1911.221 kb on - strand, within Psyr_1701at 1911.221 kb on - strand, within Psyr_1701at 1911.226 kb on + strand, within Psyr_1701at 1911.227 kb on - strand, within Psyr_1701at 1911.227 kb on - strand, within Psyr_1701at 1911.277 kb on + strand, within Psyr_1701at 1911.277 kb on + strand, within Psyr_1701at 1911.281 kb on - strandat 1911.738 kb on + strandat 1911.778 kb on - strandat 1911.797 kb on + strandat 1911.937 kb on + strandat 1911.937 kb on + strandat 1911.979 kb on + strandat 1911.979 kb on + strandat 1911.980 kb on - strandat 1912.066 kb on + strand, within Psyr_1702at 1912.066 kb on + strand, within Psyr_1702at 1912.067 kb on - strand, within Psyr_1702at 1912.067 kb on - strand, within Psyr_1702at 1912.067 kb on - strand, within Psyr_1702at 1912.070 kb on + strand, within Psyr_1702at 1912.148 kb on - strand, within Psyr_1702at 1912.216 kb on - strand, within Psyr_1702at 1912.216 kb on - strand, within Psyr_1702at 1912.216 kb on - strand, within Psyr_1702at 1912.219 kb on + strand, within Psyr_1702at 1912.372 kb on + strand, within Psyr_1702at 1912.433 kb on - strand, within Psyr_1702at 1912.508 kb on + strand, within Psyr_1702at 1912.509 kb on - strand, within Psyr_1702at 1912.509 kb on - strand, within Psyr_1702at 1912.509 kb on - strand, within Psyr_1702at 1912.509 kb on - strand, within Psyr_1702at 1912.509 kb on - strand, within Psyr_1702at 1912.512 kb on + strand, within Psyr_1702at 1912.512 kb on + strand, within Psyr_1702at 1912.513 kb on - strand, within Psyr_1702at 1912.558 kb on - strand, within Psyr_1702at 1912.561 kb on + strand, within Psyr_1702at 1912.588 kb on + strand, within Psyr_1702at 1912.641 kb on + strandat 1912.642 kb on - strandat 1912.642 kb on - strandat 1912.642 kb on - strandat 1912.928 kb on - strand, within Psyr_1703at 1912.931 kb on + strand, within Psyr_1703at 1912.931 kb on + strand, within Psyr_1703at 1912.931 kb on + strand, within Psyr_1703at 1912.932 kb on - strand, within Psyr_1703at 1912.932 kb on - strand, within Psyr_1703at 1912.932 kb on - strand, within Psyr_1703at 1913.011 kb on + strand, within Psyr_1703at 1913.187 kb on + strand, within Psyr_1703at 1913.269 kb on + strand, within Psyr_1703at 1913.276 kb on - strand, within Psyr_1703at 1913.307 kb on + strand, within Psyr_1703at 1913.403 kb on + strand, within Psyr_1703at 1913.404 kb on - strand, within Psyr_1703at 1913.405 kb on + strand, within Psyr_1703at 1913.426 kb on + strand, within Psyr_1703at 1913.486 kb on + strand, within Psyr_1703at 1913.486 kb on + strand, within Psyr_1703at 1913.487 kb on - strand, within Psyr_1703at 1913.487 kb on - strand, within Psyr_1703at 1913.488 kb on + strand, within Psyr_1703at 1913.488 kb on + strand, within Psyr_1703at 1913.488 kb on + strand, within Psyr_1703at 1913.488 kb on + strand, within Psyr_1703at 1913.488 kb on + strand, within Psyr_1703at 1913.488 kb on + strand, within Psyr_1703at 1913.488 kb on + strand, within Psyr_1703at 1913.489 kb on - strand, within Psyr_1703at 1913.489 kb on - strand, within Psyr_1703at 1913.492 kb on - strand, within Psyr_1703at 1913.497 kb on + strand, within Psyr_1703at 1913.599 kb on + strand, within Psyr_1703at 1913.643 kb on + strand, within Psyr_1703at 1913.643 kb on + strand, within Psyr_1703

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Diallyl sulfide 10 mM
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1,911,031 + Psyr_1701 0.80 -0.4
1,911,031 + Psyr_1701 0.80 +1.1
1,911,031 + Psyr_1701 0.80 +3.7
1,911,032 - Psyr_1701 0.80 -0.6
1,911,147 - Psyr_1701 0.84 -0.9
1,911,220 + Psyr_1701 0.87 +1.1
1,911,220 + Psyr_1701 0.87 -3.4
1,911,220 + Psyr_1701 0.87 -0.1
1,911,220 + Psyr_1701 0.87 +0.2
1,911,221 - Psyr_1701 0.87 -1.4
1,911,221 - Psyr_1701 0.87 +0.5
1,911,226 + Psyr_1701 0.88 -0.5
1,911,227 - Psyr_1701 0.88 +1.8
1,911,227 - Psyr_1701 0.88 +3.9
1,911,277 + Psyr_1701 0.90 +1.0
1,911,277 + Psyr_1701 0.90 +1.1
1,911,281 - -0.7
1,911,738 + -0.5
1,911,778 - -0.1
1,911,797 + -2.5
1,911,937 + -3.0
1,911,937 + -0.0
1,911,979 + -2.0
1,911,979 + +0.4
1,911,980 - +1.1
1,912,066 + Psyr_1702 0.16 +0.1
1,912,066 + Psyr_1702 0.16 -0.1
1,912,067 - Psyr_1702 0.16 -0.3
1,912,067 - Psyr_1702 0.16 -0.2
1,912,067 - Psyr_1702 0.16 +1.1
1,912,070 + Psyr_1702 0.16 -0.0
1,912,148 - Psyr_1702 0.27 -0.5
1,912,216 - Psyr_1702 0.37 -0.7
1,912,216 - Psyr_1702 0.37 -2.2
1,912,216 - Psyr_1702 0.37 -0.9
1,912,219 + Psyr_1702 0.37 +0.5
1,912,372 + Psyr_1702 0.58 -1.4
1,912,433 - Psyr_1702 0.67 -1.6
1,912,508 + Psyr_1702 0.77 +0.1
1,912,509 - Psyr_1702 0.78 +0.8
1,912,509 - Psyr_1702 0.78 -1.2
1,912,509 - Psyr_1702 0.78 +0.3
1,912,509 - Psyr_1702 0.78 -0.2
1,912,509 - Psyr_1702 0.78 +0.4
1,912,512 + Psyr_1702 0.78 -0.0
1,912,512 + Psyr_1702 0.78 +0.1
1,912,513 - Psyr_1702 0.78 -0.9
1,912,558 - Psyr_1702 0.84 -1.2
1,912,561 + Psyr_1702 0.85 -0.8
1,912,588 + Psyr_1702 0.89 +1.0
1,912,641 + -0.1
1,912,642 - +1.1
1,912,642 - +0.2
1,912,642 - -0.4
1,912,928 - Psyr_1703 0.10 +0.4
1,912,931 + Psyr_1703 0.10 -2.5
1,912,931 + Psyr_1703 0.10 +0.9
1,912,931 + Psyr_1703 0.10 +0.6
1,912,932 - Psyr_1703 0.11 +1.0
1,912,932 - Psyr_1703 0.11 +2.4
1,912,932 - Psyr_1703 0.11 -1.9
1,913,011 + Psyr_1703 0.18 +1.5
1,913,187 + Psyr_1703 0.35 -0.3
1,913,269 + Psyr_1703 0.43 -0.6
1,913,276 - Psyr_1703 0.43 -0.1
1,913,307 + Psyr_1703 0.46 -0.6
1,913,403 + Psyr_1703 0.55 +0.6
1,913,404 - Psyr_1703 0.55 -0.5
1,913,405 + Psyr_1703 0.55 -0.5
1,913,426 + Psyr_1703 0.57 +0.2
1,913,486 + Psyr_1703 0.63 +0.4
1,913,486 + Psyr_1703 0.63 -1.1
1,913,487 - Psyr_1703 0.63 -2.7
1,913,487 - Psyr_1703 0.63 -0.1
1,913,488 + Psyr_1703 0.63 +0.2
1,913,488 + Psyr_1703 0.63 +0.5
1,913,488 + Psyr_1703 0.63 -0.0
1,913,488 + Psyr_1703 0.63 +0.6
1,913,488 + Psyr_1703 0.63 +1.0
1,913,488 + Psyr_1703 0.63 -0.2
1,913,488 + Psyr_1703 0.63 +1.3
1,913,489 - Psyr_1703 0.63 +0.2
1,913,489 - Psyr_1703 0.63 -3.2
1,913,492 - Psyr_1703 0.64 -0.6
1,913,497 + Psyr_1703 0.64 +0.2
1,913,599 + Psyr_1703 0.74 -0.5
1,913,643 + Psyr_1703 0.78 -1.0
1,913,643 + Psyr_1703 0.78 +2.5

Or see this region's nucleotide sequence