Experiment: 5-Aminovaleric 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0339 and PP_0340 are separated by 383 nucleotides PP_0340 and PP_0341 are separated by 202 nucleotides
PP_0339: PP_0339 - Pyruvate dehydrogenase E1 component, at 408,018 to 410,663
_0339
PP_0340: PP_0340 - Glutamate-ammonia-ligase adenylyltransferase, at 411,047 to 413,980
_0340
PP_0341: PP_0341 - ADP-heptose:LPS heptosyltransferase II, at 414,183 to 415,232
_0341
Position (kb) 411
412
413
414 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 410.051 kb on - strand, within PP_0339 at 410.329 kb on + strand, within PP_0339 at 410.329 kb on + strand, within PP_0339 at 410.330 kb on - strand, within PP_0339 at 410.354 kb on + strand, within PP_0339 at 410.811 kb on + strand at 411.041 kb on + strand at 411.054 kb on + strand at 411.400 kb on + strand, within PP_0340 at 411.401 kb on - strand, within PP_0340 at 411.416 kb on - strand, within PP_0340 at 411.604 kb on + strand, within PP_0340 at 411.785 kb on + strand, within PP_0340 at 411.785 kb on + strand, within PP_0340 at 411.785 kb on + strand, within PP_0340 at 411.833 kb on + strand, within PP_0340 at 411.833 kb on + strand, within PP_0340 at 411.833 kb on + strand, within PP_0340 at 411.833 kb on + strand, within PP_0340 at 411.833 kb on + strand, within PP_0340 at 411.834 kb on - strand, within PP_0340 at 411.834 kb on - strand, within PP_0340 at 411.836 kb on + strand, within PP_0340 at 411.836 kb on + strand, within PP_0340 at 411.837 kb on - strand, within PP_0340 at 411.948 kb on - strand, within PP_0340 at 412.063 kb on + strand, within PP_0340 at 412.075 kb on - strand, within PP_0340 at 412.075 kb on - strand, within PP_0340 at 412.075 kb on - strand, within PP_0340 at 412.075 kb on - strand, within PP_0340 at 412.178 kb on + strand, within PP_0340 at 412.179 kb on - strand, within PP_0340 at 412.179 kb on - strand, within PP_0340 at 412.179 kb on - strand, within PP_0340 at 412.217 kb on + strand, within PP_0340 at 412.217 kb on + strand, within PP_0340 at 412.218 kb on - strand, within PP_0340 at 412.233 kb on - strand, within PP_0340 at 412.316 kb on + strand, within PP_0340 at 412.316 kb on + strand, within PP_0340 at 412.364 kb on + strand, within PP_0340 at 412.364 kb on + strand, within PP_0340 at 412.725 kb on - strand, within PP_0340 at 412.731 kb on + strand, within PP_0340 at 412.732 kb on - strand, within PP_0340 at 413.269 kb on + strand, within PP_0340 at 413.351 kb on + strand, within PP_0340 at 413.351 kb on + strand, within PP_0340 at 413.352 kb on - strand, within PP_0340 at 413.352 kb on - strand, within PP_0340 at 413.352 kb on - strand, within PP_0340 at 413.352 kb on - strand, within PP_0340 at 413.362 kb on + strand, within PP_0340 at 413.535 kb on + strand, within PP_0340 at 413.536 kb on - strand, within PP_0340 at 413.583 kb on - strand, within PP_0340 at 413.664 kb on + strand, within PP_0340 at 413.674 kb on + strand, within PP_0340 at 413.761 kb on - strand at 413.761 kb on - strand at 413.852 kb on + strand at 413.853 kb on - strand at 413.974 kb on - strand at 413.995 kb on - strand at 414.022 kb on + strand at 414.022 kb on + strand at 414.079 kb on - strand at 414.094 kb on + strand at 414.110 kb on + strand at 414.178 kb on + strand at 414.178 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Aminovaleric 10 mM (C) remove 410,051 - PP_0339 0.77 +1.5 410,329 + PP_0339 0.87 -0.1 410,329 + PP_0339 0.87 +4.3 410,330 - PP_0339 0.87 +2.0 410,354 + PP_0339 0.88 +2.7 410,811 + +0.7 411,041 + +0.9 411,054 + +0.2 411,400 + PP_0340 0.12 -0.9 411,401 - PP_0340 0.12 -4.0 411,416 - PP_0340 0.13 -4.9 411,604 + PP_0340 0.19 -0.3 411,785 + PP_0340 0.25 -0.1 411,785 + PP_0340 0.25 -0.4 411,785 + PP_0340 0.25 -0.9 411,833 + PP_0340 0.27 -1.8 411,833 + PP_0340 0.27 -2.9 411,833 + PP_0340 0.27 -2.0 411,833 + PP_0340 0.27 -1.5 411,833 + PP_0340 0.27 -0.6 411,834 - PP_0340 0.27 -1.8 411,834 - PP_0340 0.27 -2.1 411,836 + PP_0340 0.27 -2.9 411,836 + PP_0340 0.27 -0.4 411,837 - PP_0340 0.27 -0.8 411,948 - PP_0340 0.31 -3.6 412,063 + PP_0340 0.35 -0.4 412,075 - PP_0340 0.35 -2.3 412,075 - PP_0340 0.35 -3.2 412,075 - PP_0340 0.35 -1.2 412,075 - PP_0340 0.35 -2.5 412,178 + PP_0340 0.39 -1.0 412,179 - PP_0340 0.39 -2.9 412,179 - PP_0340 0.39 -1.6 412,179 - PP_0340 0.39 -1.7 412,217 + PP_0340 0.40 -1.6 412,217 + PP_0340 0.40 -1.1 412,218 - PP_0340 0.40 -4.3 412,233 - PP_0340 0.40 +0.1 412,316 + PP_0340 0.43 -3.0 412,316 + PP_0340 0.43 -2.4 412,364 + PP_0340 0.45 -1.9 412,364 + PP_0340 0.45 -1.4 412,725 - PP_0340 0.57 -1.1 412,731 + PP_0340 0.57 -4.8 412,732 - PP_0340 0.57 -1.8 413,269 + PP_0340 0.76 -1.7 413,351 + PP_0340 0.79 -1.5 413,351 + PP_0340 0.79 -2.2 413,352 - PP_0340 0.79 -1.6 413,352 - PP_0340 0.79 -1.6 413,352 - PP_0340 0.79 -0.8 413,352 - PP_0340 0.79 -2.6 413,362 + PP_0340 0.79 -2.0 413,535 + PP_0340 0.85 -2.0 413,536 - PP_0340 0.85 -1.3 413,583 - PP_0340 0.86 -2.0 413,664 + PP_0340 0.89 -2.0 413,674 + PP_0340 0.90 -4.0 413,761 - -2.9 413,761 - -0.8 413,852 + -2.4 413,853 - -4.6 413,974 - +0.6 413,995 - +1.2 414,022 + -1.3 414,022 + -1.3 414,079 - +0.6 414,094 + -1.6 414,110 + -0.2 414,178 + +0.1 414,178 + -0.2
Or see this region's nucleotide sequence