Experiment: KB with Chaulmoogric 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4223 and Psyr_4224 are separated by 636 nucleotides Psyr_4224 and Psyr_4225 are separated by 243 nucleotides
Psyr_4223: Psyr_4223 - conserved hypothetical protein, at 5,030,003 to 5,030,203
_4223
Psyr_4224: Psyr_4224 - conserved hypothetical protein, at 5,030,840 to 5,031,079
_4224
Psyr_4225: Psyr_4225 - galactarate dehydratase, at 5,031,323 to 5,032,876
_4225
Position (kb) 5030
5031
5032 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5029.898 kb on - strand at 5029.952 kb on - strand at 5029.976 kb on + strand at 5029.976 kb on + strand at 5029.977 kb on - strand at 5029.977 kb on - strand at 5029.977 kb on - strand at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.028 kb on + strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.029 kb on - strand, within Psyr_4223 at 5030.030 kb on + strand, within Psyr_4223 at 5030.030 kb on + strand, within Psyr_4223 at 5030.030 kb on + strand, within Psyr_4223 at 5030.031 kb on - strand, within Psyr_4223 at 5030.031 kb on - strand, within Psyr_4223 at 5030.049 kb on + strand, within Psyr_4223 at 5030.049 kb on + strand, within Psyr_4223 at 5030.049 kb on + strand, within Psyr_4223 at 5030.049 kb on + strand, within Psyr_4223 at 5030.049 kb on + strand, within Psyr_4223 at 5030.050 kb on - strand, within Psyr_4223 at 5030.050 kb on - strand, within Psyr_4223 at 5030.050 kb on - strand, within Psyr_4223 at 5030.052 kb on + strand, within Psyr_4223 at 5030.052 kb on + strand, within Psyr_4223 at 5030.053 kb on - strand, within Psyr_4223 at 5030.185 kb on - strand at 5030.287 kb on + strand at 5030.287 kb on + strand at 5030.287 kb on + strand at 5030.288 kb on - strand at 5030.288 kb on - strand at 5030.288 kb on - strand at 5030.351 kb on - strand at 5030.361 kb on + strand at 5030.509 kb on + strand at 5030.509 kb on + strand at 5030.509 kb on + strand at 5030.510 kb on - strand at 5030.510 kb on - strand at 5030.510 kb on - strand at 5030.510 kb on - strand at 5030.623 kb on + strand at 5030.624 kb on - strand at 5030.649 kb on + strand at 5030.649 kb on + strand at 5030.649 kb on + strand at 5030.650 kb on - strand at 5030.650 kb on - strand at 5030.650 kb on - strand at 5030.650 kb on - strand at 5030.687 kb on + strand at 5030.687 kb on + strand at 5030.687 kb on + strand at 5030.687 kb on + strand at 5030.687 kb on + strand at 5030.687 kb on + strand at 5030.688 kb on - strand at 5030.688 kb on - strand at 5030.688 kb on - strand at 5030.688 kb on - strand at 5030.688 kb on - strand at 5030.789 kb on + strand at 5030.790 kb on - strand at 5030.790 kb on - strand at 5030.790 kb on - strand at 5030.790 kb on - strand at 5030.790 kb on - strand at 5030.801 kb on + strand at 5030.801 kb on + strand at 5030.802 kb on - strand at 5030.802 kb on - strand at 5030.844 kb on + strand at 5030.844 kb on + strand at 5030.844 kb on + strand at 5030.844 kb on + strand at 5030.844 kb on + strand at 5030.844 kb on + strand at 5030.845 kb on - strand at 5030.845 kb on - strand at 5030.845 kb on - strand at 5030.845 kb on - strand at 5030.845 kb on - strand at 5030.992 kb on + strand, within Psyr_4224 at 5030.993 kb on - strand, within Psyr_4224 at 5031.000 kb on - strand, within Psyr_4224 at 5031.126 kb on + strand at 5031.127 kb on - strand at 5031.127 kb on - strand at 5031.127 kb on - strand at 5031.131 kb on + strand at 5031.131 kb on + strand at 5031.131 kb on + strand at 5031.131 kb on + strand at 5031.132 kb on - strand at 5031.132 kb on - strand at 5031.132 kb on - strand at 5031.132 kb on - strand at 5031.132 kb on - strand at 5031.154 kb on - strand at 5031.167 kb on + strand at 5031.167 kb on + strand at 5031.168 kb on - strand at 5031.246 kb on - strand at 5031.251 kb on + strand at 5031.251 kb on + strand at 5031.251 kb on + strand at 5031.252 kb on - strand at 5031.252 kb on - strand at 5031.418 kb on - strand at 5031.485 kb on + strand, within Psyr_4225 at 5031.485 kb on + strand, within Psyr_4225 at 5031.485 kb on + strand, within Psyr_4225 at 5031.485 kb on + strand, within Psyr_4225 at 5031.485 kb on + strand, within Psyr_4225 at 5031.485 kb on + strand, within Psyr_4225 at 5031.485 kb on + strand, within Psyr_4225 at 5031.485 kb on + strand, within Psyr_4225 at 5031.485 kb on + strand, within Psyr_4225 at 5031.485 kb on + strand, within Psyr_4225 at 5031.485 kb on + strand, within Psyr_4225 at 5031.485 kb on + strand, within Psyr_4225 at 5031.485 kb on + strand, within Psyr_4225 at 5031.485 kb on + strand, within Psyr_4225 at 5031.485 kb on + strand, within Psyr_4225 at 5031.486 kb on - strand, within Psyr_4225 at 5031.486 kb on - strand, within Psyr_4225 at 5031.486 kb on - strand, within Psyr_4225 at 5031.486 kb on - strand, within Psyr_4225 at 5031.486 kb on - strand, within Psyr_4225 at 5031.486 kb on - strand, within Psyr_4225 at 5031.486 kb on - strand, within Psyr_4225 at 5031.486 kb on - strand, within Psyr_4225 at 5031.486 kb on - strand, within Psyr_4225 at 5031.486 kb on - strand, within Psyr_4225 at 5031.486 kb on - strand, within Psyr_4225 at 5031.486 kb on - strand, within Psyr_4225 at 5031.486 kb on - strand, within Psyr_4225 at 5031.486 kb on - strand, within Psyr_4225 at 5031.486 kb on - strand, within Psyr_4225 at 5031.489 kb on + strand, within Psyr_4225 at 5031.590 kb on + strand, within Psyr_4225 at 5031.590 kb on + strand, within Psyr_4225 at 5031.590 kb on + strand, within Psyr_4225 at 5031.590 kb on + strand, within Psyr_4225 at 5031.590 kb on + strand, within Psyr_4225 at 5031.590 kb on + strand, within Psyr_4225 at 5031.590 kb on + strand, within Psyr_4225 at 5031.590 kb on + strand, within Psyr_4225 at 5031.590 kb on + strand, within Psyr_4225 at 5031.590 kb on + strand, within Psyr_4225 at 5031.590 kb on + strand, within Psyr_4225 at 5031.590 kb on + strand, within Psyr_4225 at 5031.590 kb on + strand, within Psyr_4225 at 5031.590 kb on + strand, within Psyr_4225 at 5031.591 kb on - strand, within Psyr_4225 at 5031.591 kb on - strand, within Psyr_4225 at 5031.591 kb on - strand, within Psyr_4225 at 5031.591 kb on - strand, within Psyr_4225 at 5031.591 kb on - strand, within Psyr_4225 at 5031.591 kb on - strand, within Psyr_4225 at 5031.591 kb on - strand, within Psyr_4225 at 5031.906 kb on + strand, within Psyr_4225 at 5031.906 kb on + strand, within Psyr_4225 at 5031.907 kb on - strand, within Psyr_4225 at 5031.907 kb on - strand, within Psyr_4225 at 5031.907 kb on - strand, within Psyr_4225 at 5031.924 kb on + strand, within Psyr_4225 at 5031.981 kb on + strand, within Psyr_4225 at 5031.982 kb on - strand, within Psyr_4225
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Chaulmoogric 10 mM remove 5,029,898 - +1.4 5,029,952 - +0.8 5,029,976 + +1.0 5,029,976 + +1.4 5,029,977 - -0.5 5,029,977 - +0.3 5,029,977 - +0.1 5,030,028 + Psyr_4223 0.12 -1.2 5,030,028 + Psyr_4223 0.12 -1.6 5,030,028 + Psyr_4223 0.12 -1.7 5,030,028 + Psyr_4223 0.12 -0.2 5,030,028 + Psyr_4223 0.12 -0.7 5,030,028 + Psyr_4223 0.12 +1.7 5,030,028 + Psyr_4223 0.12 +0.5 5,030,028 + Psyr_4223 0.12 +0.6 5,030,028 + Psyr_4223 0.12 +1.0 5,030,028 + Psyr_4223 0.12 +1.8 5,030,028 + Psyr_4223 0.12 -0.6 5,030,028 + Psyr_4223 0.12 +0.6 5,030,028 + Psyr_4223 0.12 +0.7 5,030,028 + Psyr_4223 0.12 +1.6 5,030,028 + Psyr_4223 0.12 +0.6 5,030,028 + Psyr_4223 0.12 +1.6 5,030,028 + Psyr_4223 0.12 +3.8 5,030,028 + Psyr_4223 0.12 -0.3 5,030,028 + Psyr_4223 0.12 +0.4 5,030,028 + Psyr_4223 0.12 -2.0 5,030,028 + Psyr_4223 0.12 +0.2 5,030,028 + Psyr_4223 0.12 +1.6 5,030,028 + Psyr_4223 0.12 -0.6 5,030,028 + Psyr_4223 0.12 +0.3 5,030,029 - Psyr_4223 0.13 -2.8 5,030,029 - Psyr_4223 0.13 -0.3 5,030,029 - Psyr_4223 0.13 +3.4 5,030,029 - Psyr_4223 0.13 -1.2 5,030,029 - Psyr_4223 0.13 -0.5 5,030,029 - Psyr_4223 0.13 +1.6 5,030,029 - Psyr_4223 0.13 -3.0 5,030,029 - Psyr_4223 0.13 -0.3 5,030,029 - Psyr_4223 0.13 -0.8 5,030,029 - Psyr_4223 0.13 +0.4 5,030,029 - Psyr_4223 0.13 +3.0 5,030,029 - Psyr_4223 0.13 +1.5 5,030,029 - Psyr_4223 0.13 +1.3 5,030,029 - Psyr_4223 0.13 -0.2 5,030,029 - Psyr_4223 0.13 -1.3 5,030,029 - Psyr_4223 0.13 +0.7 5,030,029 - Psyr_4223 0.13 -0.3 5,030,029 - Psyr_4223 0.13 -1.0 5,030,029 - Psyr_4223 0.13 +0.0 5,030,029 - Psyr_4223 0.13 +0.9 5,030,029 - Psyr_4223 0.13 -1.1 5,030,029 - Psyr_4223 0.13 +0.2 5,030,029 - Psyr_4223 0.13 -2.6 5,030,029 - Psyr_4223 0.13 +0.3 5,030,029 - Psyr_4223 0.13 -0.2 5,030,030 + Psyr_4223 0.13 +0.5 5,030,030 + Psyr_4223 0.13 +1.5 5,030,030 + Psyr_4223 0.13 +0.3 5,030,031 - Psyr_4223 0.14 +0.0 5,030,031 - Psyr_4223 0.14 -0.3 5,030,049 + Psyr_4223 0.23 -0.4 5,030,049 + Psyr_4223 0.23 +0.2 5,030,049 + Psyr_4223 0.23 -0.7 5,030,049 + Psyr_4223 0.23 +1.0 5,030,049 + Psyr_4223 0.23 +1.7 5,030,050 - Psyr_4223 0.23 -0.1 5,030,050 - Psyr_4223 0.23 +0.7 5,030,050 - Psyr_4223 0.23 +0.0 5,030,052 + Psyr_4223 0.24 -0.8 5,030,052 + Psyr_4223 0.24 +0.3 5,030,053 - Psyr_4223 0.25 -0.0 5,030,185 - -0.6 5,030,287 + +0.4 5,030,287 + -0.6 5,030,287 + -0.1 5,030,288 - -1.6 5,030,288 - +2.0 5,030,288 - -1.4 5,030,351 - -0.7 5,030,361 + -1.5 5,030,509 + -0.0 5,030,509 + +1.9 5,030,509 + -1.2 5,030,510 - +0.5 5,030,510 - +0.6 5,030,510 - +0.5 5,030,510 - +1.2 5,030,623 + +1.8 5,030,624 - +0.5 5,030,649 + +0.4 5,030,649 + +0.7 5,030,649 + -1.1 5,030,650 - +0.0 5,030,650 - -0.2 5,030,650 - +1.0 5,030,650 - -0.0 5,030,687 + -0.1 5,030,687 + -0.3 5,030,687 + +0.3 5,030,687 + +0.1 5,030,687 + -1.7 5,030,687 + +0.1 5,030,688 - -0.3 5,030,688 - -0.8 5,030,688 - +0.4 5,030,688 - +0.4 5,030,688 - +0.4 5,030,789 + +0.4 5,030,790 - +2.9 5,030,790 - +0.1 5,030,790 - -0.6 5,030,790 - +0.1 5,030,790 - +0.2 5,030,801 + +1.4 5,030,801 + +1.6 5,030,802 - +0.3 5,030,802 - -0.7 5,030,844 + +0.5 5,030,844 + +0.9 5,030,844 + -1.0 5,030,844 + +2.8 5,030,844 + +1.7 5,030,844 + +0.7 5,030,845 - +0.0 5,030,845 - -0.4 5,030,845 - -1.8 5,030,845 - +0.1 5,030,845 - +0.7 5,030,992 + Psyr_4224 0.63 +0.3 5,030,993 - Psyr_4224 0.64 +2.6 5,031,000 - Psyr_4224 0.67 +3.6 5,031,126 + -0.8 5,031,127 - +4.0 5,031,127 - -0.3 5,031,127 - -0.2 5,031,131 + -1.8 5,031,131 + -1.6 5,031,131 + +0.9 5,031,131 + +0.2 5,031,132 - -0.7 5,031,132 - +2.0 5,031,132 - -1.8 5,031,132 - -0.3 5,031,132 - +0.1 5,031,154 - +0.6 5,031,167 + +0.1 5,031,167 + +0.0 5,031,168 - +0.2 5,031,246 - -0.3 5,031,251 + +0.7 5,031,251 + -1.6 5,031,251 + -0.5 5,031,252 - -0.7 5,031,252 - -0.4 5,031,418 - -0.3 5,031,485 + Psyr_4225 0.10 -0.1 5,031,485 + Psyr_4225 0.10 -0.4 5,031,485 + Psyr_4225 0.10 +1.2 5,031,485 + Psyr_4225 0.10 -0.1 5,031,485 + Psyr_4225 0.10 -0.2 5,031,485 + Psyr_4225 0.10 -1.4 5,031,485 + Psyr_4225 0.10 -0.1 5,031,485 + Psyr_4225 0.10 -0.6 5,031,485 + Psyr_4225 0.10 +0.3 5,031,485 + Psyr_4225 0.10 -0.1 5,031,485 + Psyr_4225 0.10 -0.6 5,031,485 + Psyr_4225 0.10 +0.9 5,031,485 + Psyr_4225 0.10 +0.7 5,031,485 + Psyr_4225 0.10 -0.4 5,031,485 + Psyr_4225 0.10 +0.2 5,031,486 - Psyr_4225 0.10 +1.9 5,031,486 - Psyr_4225 0.10 +1.4 5,031,486 - Psyr_4225 0.10 +0.5 5,031,486 - Psyr_4225 0.10 -0.5 5,031,486 - Psyr_4225 0.10 +0.5 5,031,486 - Psyr_4225 0.10 +0.4 5,031,486 - Psyr_4225 0.10 +0.2 5,031,486 - Psyr_4225 0.10 +0.2 5,031,486 - Psyr_4225 0.10 +0.9 5,031,486 - Psyr_4225 0.10 -0.1 5,031,486 - Psyr_4225 0.10 +1.8 5,031,486 - Psyr_4225 0.10 +0.2 5,031,486 - Psyr_4225 0.10 -0.1 5,031,486 - Psyr_4225 0.10 -0.6 5,031,486 - Psyr_4225 0.10 +0.1 5,031,489 + Psyr_4225 0.11 +0.4 5,031,590 + Psyr_4225 0.17 -0.2 5,031,590 + Psyr_4225 0.17 +1.2 5,031,590 + Psyr_4225 0.17 -0.5 5,031,590 + Psyr_4225 0.17 +0.2 5,031,590 + Psyr_4225 0.17 +2.2 5,031,590 + Psyr_4225 0.17 -1.7 5,031,590 + Psyr_4225 0.17 -0.0 5,031,590 + Psyr_4225 0.17 -1.7 5,031,590 + Psyr_4225 0.17 +3.3 5,031,590 + Psyr_4225 0.17 +3.0 5,031,590 + Psyr_4225 0.17 +1.0 5,031,590 + Psyr_4225 0.17 -0.7 5,031,590 + Psyr_4225 0.17 +0.7 5,031,590 + Psyr_4225 0.17 -0.1 5,031,591 - Psyr_4225 0.17 +0.8 5,031,591 - Psyr_4225 0.17 -0.2 5,031,591 - Psyr_4225 0.17 +0.7 5,031,591 - Psyr_4225 0.17 -0.5 5,031,591 - Psyr_4225 0.17 +1.7 5,031,591 - Psyr_4225 0.17 -0.5 5,031,591 - Psyr_4225 0.17 -1.5 5,031,906 + Psyr_4225 0.38 -0.1 5,031,906 + Psyr_4225 0.38 -2.7 5,031,907 - Psyr_4225 0.38 +0.7 5,031,907 - Psyr_4225 0.38 -1.1 5,031,907 - Psyr_4225 0.38 +0.5 5,031,924 + Psyr_4225 0.39 -0.1 5,031,981 + Psyr_4225 0.42 -2.0 5,031,982 - Psyr_4225 0.42 +0.2
Or see this region's nucleotide sequence