Experiment: KB with Chaulmoogric 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3639 and Psyr_3640 are separated by 415 nucleotides Psyr_3640 and Psyr_3641 are separated by 24 nucleotides Psyr_3641 and Psyr_3642 are separated by 320 nucleotides
Psyr_3639: Psyr_3639 - Beta-lactamase-like:RNA-metabolising metallo-beta-lactamase, at 4,321,250 to 4,322,692
_3639
Psyr_3640: Psyr_3640 - conserved hypothetical protein, at 4,323,108 to 4,323,350
_3640
Psyr_3641: Psyr_3641 - Integration host factor, beta subunit, at 4,323,375 to 4,323,671
_3641
Psyr_3642: Psyr_3642 - SSU ribosomal protein S1P, at 4,323,992 to 4,325,683
_3642
Position (kb) 4323
4324 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4322.441 kb on + strand, within Psyr_3639 at 4322.454 kb on + strand, within Psyr_3639 at 4322.501 kb on + strand, within Psyr_3639 at 4322.501 kb on + strand, within Psyr_3639 at 4322.501 kb on + strand, within Psyr_3639 at 4322.501 kb on + strand, within Psyr_3639 at 4322.501 kb on + strand, within Psyr_3639 at 4322.501 kb on + strand, within Psyr_3639 at 4322.501 kb on + strand, within Psyr_3639 at 4322.501 kb on + strand, within Psyr_3639 at 4322.502 kb on - strand, within Psyr_3639 at 4322.502 kb on - strand, within Psyr_3639 at 4322.502 kb on - strand, within Psyr_3639 at 4322.502 kb on - strand, within Psyr_3639 at 4322.502 kb on - strand, within Psyr_3639 at 4322.741 kb on + strand at 4322.757 kb on + strand at 4322.757 kb on + strand at 4322.758 kb on - strand at 4322.827 kb on + strand at 4322.843 kb on + strand at 4322.843 kb on + strand at 4322.847 kb on + strand at 4322.848 kb on - strand at 4322.848 kb on - strand at 4322.848 kb on - strand at 4322.849 kb on + strand at 4322.896 kb on - strand at 4322.918 kb on - strand at 4322.918 kb on - strand at 4322.926 kb on + strand at 4322.926 kb on + strand at 4322.953 kb on + strand at 4322.955 kb on + strand at 4322.956 kb on - strand at 4322.956 kb on - strand at 4323.093 kb on + strand at 4323.140 kb on + strand, within Psyr_3640 at 4323.141 kb on - strand, within Psyr_3640 at 4323.279 kb on + strand, within Psyr_3640 at 4323.279 kb on + strand, within Psyr_3640 at 4323.344 kb on + strand at 4323.344 kb on + strand at 4323.345 kb on - strand at 4323.377 kb on - strand at 4323.697 kb on + strand at 4323.698 kb on - strand at 4323.719 kb on + strand at 4323.720 kb on - strand at 4323.751 kb on + strand at 4323.751 kb on + strand at 4323.751 kb on + strand at 4323.752 kb on - strand at 4323.752 kb on - strand at 4323.759 kb on + strand at 4323.759 kb on + strand at 4323.760 kb on - strand at 4323.760 kb on - strand at 4323.760 kb on - strand at 4323.794 kb on + strand at 4323.795 kb on - strand at 4323.795 kb on - strand at 4323.849 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Chaulmoogric 10 mM remove 4,322,441 + Psyr_3639 0.83 -0.9 4,322,454 + Psyr_3639 0.83 -0.6 4,322,501 + Psyr_3639 0.87 +0.6 4,322,501 + Psyr_3639 0.87 -0.6 4,322,501 + Psyr_3639 0.87 +0.1 4,322,501 + Psyr_3639 0.87 -0.5 4,322,501 + Psyr_3639 0.87 -0.8 4,322,501 + Psyr_3639 0.87 +0.3 4,322,501 + Psyr_3639 0.87 -0.1 4,322,501 + Psyr_3639 0.87 -0.9 4,322,502 - Psyr_3639 0.87 +0.0 4,322,502 - Psyr_3639 0.87 +2.2 4,322,502 - Psyr_3639 0.87 +1.0 4,322,502 - Psyr_3639 0.87 +1.4 4,322,502 - Psyr_3639 0.87 -0.2 4,322,741 + +0.0 4,322,757 + -0.6 4,322,757 + -0.8 4,322,758 - +1.2 4,322,827 + +1.1 4,322,843 + -3.1 4,322,843 + +2.0 4,322,847 + +0.2 4,322,848 - -1.8 4,322,848 - +0.6 4,322,848 - +1.5 4,322,849 + +0.1 4,322,896 - -0.1 4,322,918 - +0.8 4,322,918 - -0.4 4,322,926 + +0.1 4,322,926 + +1.3 4,322,953 + +1.0 4,322,955 + -0.7 4,322,956 - -0.1 4,322,956 - -2.5 4,323,093 + -0.7 4,323,140 + Psyr_3640 0.13 +0.4 4,323,141 - Psyr_3640 0.14 +0.7 4,323,279 + Psyr_3640 0.70 +1.0 4,323,279 + Psyr_3640 0.70 -0.1 4,323,344 + -1.5 4,323,344 + -0.0 4,323,345 - -1.2 4,323,377 - -0.2 4,323,697 + +0.4 4,323,698 - +3.0 4,323,719 + -0.3 4,323,720 - +3.6 4,323,751 + +0.4 4,323,751 + -0.1 4,323,751 + -0.0 4,323,752 - +1.0 4,323,752 - +0.4 4,323,759 + -0.4 4,323,759 + +0.4 4,323,760 - -1.2 4,323,760 - -0.4 4,323,760 - -1.5 4,323,794 + -0.0 4,323,795 - +1.2 4,323,795 - +1.2 4,323,849 - +1.2
Or see this region's nucleotide sequence