Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3613

Experiment: KB with Chaulmoogric 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3612 and Psyr_3613 are separated by 4 nucleotidesPsyr_3613 and Psyr_3614 are separated by 57 nucleotidesPsyr_3614 and Psyr_3615 are separated by 188 nucleotides Psyr_3612: Psyr_3612 - Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal, at 4,295,384 to 4,297,774 _3612 Psyr_3613: Psyr_3613 - Glutathione peroxidase, at 4,297,779 to 4,298,264 _3613 Psyr_3614: Psyr_3614 - Protein of unknown function DUF25, at 4,298,322 to 4,298,717 _3614 Psyr_3615: Psyr_3615 - Aminotransferase, class I and II, at 4,298,906 to 4,300,117 _3615 Position (kb) 4297 4298 4299Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4297.187 kb on - strand, within Psyr_3612at 4297.316 kb on + strand, within Psyr_3612at 4297.384 kb on + strand, within Psyr_3612at 4297.543 kb on - strandat 4297.543 kb on - strandat 4297.698 kb on - strandat 4297.698 kb on - strandat 4297.698 kb on - strandat 4297.698 kb on - strandat 4297.698 kb on - strandat 4298.006 kb on - strand, within Psyr_3613at 4298.105 kb on + strand, within Psyr_3613at 4298.105 kb on + strand, within Psyr_3613at 4298.106 kb on - strand, within Psyr_3613at 4298.106 kb on - strand, within Psyr_3613at 4298.106 kb on - strand, within Psyr_3613at 4298.107 kb on + strand, within Psyr_3613at 4298.107 kb on + strand, within Psyr_3613at 4298.108 kb on - strand, within Psyr_3613at 4298.108 kb on - strand, within Psyr_3613at 4298.137 kb on + strand, within Psyr_3613at 4298.137 kb on + strand, within Psyr_3613at 4298.138 kb on - strand, within Psyr_3613at 4298.138 kb on - strand, within Psyr_3613at 4298.138 kb on - strand, within Psyr_3613at 4298.323 kb on + strandat 4298.506 kb on + strand, within Psyr_3614at 4298.507 kb on - strand, within Psyr_3614at 4298.507 kb on - strand, within Psyr_3614at 4298.507 kb on - strand, within Psyr_3614at 4298.507 kb on - strand, within Psyr_3614at 4298.584 kb on + strand, within Psyr_3614at 4298.584 kb on + strand, within Psyr_3614at 4298.584 kb on + strand, within Psyr_3614at 4298.585 kb on - strand, within Psyr_3614at 4298.585 kb on - strand, within Psyr_3614at 4298.585 kb on - strand, within Psyr_3614at 4298.585 kb on - strand, within Psyr_3614at 4298.585 kb on - strand, within Psyr_3614at 4298.585 kb on - strand, within Psyr_3614at 4298.585 kb on - strand, within Psyr_3614at 4298.585 kb on - strand, within Psyr_3614at 4298.611 kb on + strand, within Psyr_3614at 4298.612 kb on - strand, within Psyr_3614at 4298.659 kb on + strand, within Psyr_3614at 4298.660 kb on - strand, within Psyr_3614at 4298.721 kb on + strandat 4298.721 kb on + strandat 4298.721 kb on + strandat 4298.721 kb on + strandat 4298.722 kb on - strandat 4298.722 kb on - strandat 4298.722 kb on - strandat 4298.752 kb on + strandat 4298.753 kb on - strandat 4298.779 kb on + strandat 4298.780 kb on - strandat 4298.780 kb on - strandat 4298.780 kb on - strandat 4298.853 kb on - strandat 4299.152 kb on + strand, within Psyr_3615at 4299.197 kb on + strand, within Psyr_3615at 4299.197 kb on + strand, within Psyr_3615at 4299.197 kb on + strand, within Psyr_3615at 4299.197 kb on + strand, within Psyr_3615at 4299.197 kb on + strand, within Psyr_3615at 4299.197 kb on + strand, within Psyr_3615at 4299.197 kb on + strand, within Psyr_3615at 4299.198 kb on - strand, within Psyr_3615at 4299.198 kb on - strand, within Psyr_3615at 4299.198 kb on - strand, within Psyr_3615at 4299.198 kb on - strand, within Psyr_3615at 4299.198 kb on - strand, within Psyr_3615at 4299.198 kb on - strand, within Psyr_3615

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Chaulmoogric 10 mM
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4,297,187 - Psyr_3612 0.75 +1.1
4,297,316 + Psyr_3612 0.81 -0.0
4,297,384 + Psyr_3612 0.84 -1.2
4,297,543 - +1.6
4,297,543 - -0.2
4,297,698 - -0.2
4,297,698 - +1.9
4,297,698 - -1.4
4,297,698 - -0.8
4,297,698 - -0.6
4,298,006 - Psyr_3613 0.47 -0.3
4,298,105 + Psyr_3613 0.67 +0.5
4,298,105 + Psyr_3613 0.67 -0.9
4,298,106 - Psyr_3613 0.67 +0.8
4,298,106 - Psyr_3613 0.67 +3.2
4,298,106 - Psyr_3613 0.67 +0.2
4,298,107 + Psyr_3613 0.67 -1.0
4,298,107 + Psyr_3613 0.67 +0.6
4,298,108 - Psyr_3613 0.68 -2.4
4,298,108 - Psyr_3613 0.68 -1.0
4,298,137 + Psyr_3613 0.74 -0.0
4,298,137 + Psyr_3613 0.74 +1.0
4,298,138 - Psyr_3613 0.74 +0.1
4,298,138 - Psyr_3613 0.74 +1.0
4,298,138 - Psyr_3613 0.74 -0.5
4,298,323 + -1.0
4,298,506 + Psyr_3614 0.46 +1.0
4,298,507 - Psyr_3614 0.47 +0.6
4,298,507 - Psyr_3614 0.47 +0.0
4,298,507 - Psyr_3614 0.47 -0.3
4,298,507 - Psyr_3614 0.47 +0.5
4,298,584 + Psyr_3614 0.66 -0.2
4,298,584 + Psyr_3614 0.66 -0.2
4,298,584 + Psyr_3614 0.66 -0.9
4,298,585 - Psyr_3614 0.66 -0.3
4,298,585 - Psyr_3614 0.66 +3.0
4,298,585 - Psyr_3614 0.66 +3.8
4,298,585 - Psyr_3614 0.66 +0.2
4,298,585 - Psyr_3614 0.66 +1.1
4,298,585 - Psyr_3614 0.66 -0.6
4,298,585 - Psyr_3614 0.66 -0.9
4,298,585 - Psyr_3614 0.66 -0.4
4,298,611 + Psyr_3614 0.73 -0.9
4,298,612 - Psyr_3614 0.73 -1.4
4,298,659 + Psyr_3614 0.85 +1.0
4,298,660 - Psyr_3614 0.85 +0.6
4,298,721 + +0.5
4,298,721 + -1.0
4,298,721 + +2.6
4,298,721 + -3.6
4,298,722 - +1.0
4,298,722 - +0.2
4,298,722 - +0.2
4,298,752 + +0.0
4,298,753 - -1.5
4,298,779 + -1.3
4,298,780 - -0.3
4,298,780 - +0.2
4,298,780 - +0.7
4,298,853 - +0.3
4,299,152 + Psyr_3615 0.20 +3.0
4,299,197 + Psyr_3615 0.24 -0.0
4,299,197 + Psyr_3615 0.24 +0.8
4,299,197 + Psyr_3615 0.24 -0.0
4,299,197 + Psyr_3615 0.24 +0.6
4,299,197 + Psyr_3615 0.24 +0.3
4,299,197 + Psyr_3615 0.24 -1.1
4,299,197 + Psyr_3615 0.24 +0.4
4,299,198 - Psyr_3615 0.24 -1.6
4,299,198 - Psyr_3615 0.24 +0.3
4,299,198 - Psyr_3615 0.24 -3.6
4,299,198 - Psyr_3615 0.24 -0.5
4,299,198 - Psyr_3615 0.24 +0.1
4,299,198 - Psyr_3615 0.24 -0.7

Or see this region's nucleotide sequence