Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0944

Experiment: KB with Chaulmoogric 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0942 and Psyr_0943 are separated by 164 nucleotidesPsyr_0943 and Psyr_0944 are separated by 124 nucleotidesPsyr_0944 and Psyr_RNA19 are separated by 45 nucleotidesPsyr_RNA19 and Psyr_0945 are separated by 37 nucleotides Psyr_0942: Psyr_0942 - peptidyl-tRNA hydrolase, at 1,077,613 to 1,078,197 _0942 Psyr_0943: Psyr_0943 - LSU ribosomal protein L25P, at 1,078,362 to 1,078,976 _0943 Psyr_0944: Psyr_0944 - Ribose-phosphate pyrophosphokinase, at 1,079,101 to 1,080,042 _0944 Psyr_RNA19: Psyr_RNA19 - tRNA-Gln, at 1,080,088 to 1,080,162 _RNA19 Psyr_0945: Psyr_0945 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, at 1,080,200 to 1,081,048 _0945 Position (kb) 1079 1080 1081Strain fitness (log2 ratio) -1 0 1at 1078.187 kb on - strandat 1080.054 kb on - strandat 1080.082 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Chaulmoogric 10 mM
remove
1,078,187 - +0.4
1,080,054 - +0.4
1,080,082 - +0.4

Or see this region's nucleotide sequence