Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0672

Experiment: KB with Chaulmoogric 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0671 and Psyr_0672 overlap by 4 nucleotidesPsyr_0672 and Psyr_0673 are separated by 11 nucleotides Psyr_0671: Psyr_0671 - nucleoside ABC transporter membrane protein, at 760,449 to 761,378 _0671 Psyr_0672: Psyr_0672 - nucleoside ABC transporter membrane protein, at 761,375 to 762,475 _0672 Psyr_0673: Psyr_0673 - nucleoside ABC transporter ATP-binding protein, at 762,487 to 764,040 _0673 Position (kb) 761 762 763Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 760.435 kb on + strandat 760.435 kb on + strandat 760.435 kb on + strandat 760.435 kb on + strandat 760.435 kb on + strandat 760.435 kb on + strandat 760.435 kb on + strandat 760.435 kb on + strandat 760.435 kb on + strandat 760.436 kb on - strandat 760.436 kb on - strandat 760.436 kb on - strandat 760.436 kb on - strandat 760.436 kb on - strandat 760.436 kb on - strandat 760.436 kb on - strandat 760.436 kb on - strandat 760.441 kb on + strandat 760.441 kb on + strandat 760.441 kb on + strandat 760.441 kb on + strandat 760.492 kb on + strandat 760.493 kb on - strandat 760.552 kb on + strand, within Psyr_0671at 760.552 kb on + strand, within Psyr_0671at 760.552 kb on + strand, within Psyr_0671at 760.552 kb on + strand, within Psyr_0671at 760.552 kb on + strand, within Psyr_0671at 760.553 kb on - strand, within Psyr_0671at 760.553 kb on - strand, within Psyr_0671at 760.553 kb on - strand, within Psyr_0671at 760.553 kb on - strand, within Psyr_0671at 760.553 kb on - strand, within Psyr_0671at 760.553 kb on - strand, within Psyr_0671at 760.639 kb on + strand, within Psyr_0671at 760.640 kb on - strand, within Psyr_0671at 760.745 kb on - strand, within Psyr_0671at 760.759 kb on + strand, within Psyr_0671at 760.760 kb on - strand, within Psyr_0671at 760.760 kb on - strand, within Psyr_0671at 760.939 kb on + strand, within Psyr_0671at 760.940 kb on - strand, within Psyr_0671at 760.940 kb on - strand, within Psyr_0671at 761.345 kb on - strandat 761.351 kb on + strandat 761.352 kb on - strandat 761.352 kb on - strandat 761.550 kb on + strand, within Psyr_0672at 761.550 kb on + strand, within Psyr_0672at 761.550 kb on + strand, within Psyr_0672at 761.551 kb on - strand, within Psyr_0672at 761.551 kb on - strand, within Psyr_0672at 761.551 kb on - strand, within Psyr_0672at 761.631 kb on + strand, within Psyr_0672at 761.868 kb on + strand, within Psyr_0672at 761.988 kb on + strand, within Psyr_0672at 761.988 kb on + strand, within Psyr_0672at 761.988 kb on + strand, within Psyr_0672at 761.989 kb on - strand, within Psyr_0672at 761.989 kb on - strand, within Psyr_0672at 761.989 kb on - strand, within Psyr_0672at 761.989 kb on - strand, within Psyr_0672at 762.012 kb on + strand, within Psyr_0672at 762.012 kb on + strand, within Psyr_0672at 762.012 kb on + strand, within Psyr_0672at 762.012 kb on + strand, within Psyr_0672at 762.012 kb on + strand, within Psyr_0672at 762.013 kb on - strand, within Psyr_0672at 762.013 kb on - strand, within Psyr_0672at 762.013 kb on - strand, within Psyr_0672at 762.013 kb on - strand, within Psyr_0672at 762.013 kb on - strand, within Psyr_0672at 762.013 kb on - strand, within Psyr_0672at 762.013 kb on - strand, within Psyr_0672at 762.025 kb on + strand, within Psyr_0672at 762.155 kb on - strand, within Psyr_0672at 762.212 kb on + strand, within Psyr_0672at 762.212 kb on + strand, within Psyr_0672at 762.212 kb on + strand, within Psyr_0672at 762.212 kb on + strand, within Psyr_0672at 762.212 kb on + strand, within Psyr_0672at 762.212 kb on + strand, within Psyr_0672at 762.212 kb on + strand, within Psyr_0672at 762.212 kb on + strand, within Psyr_0672at 762.212 kb on + strand, within Psyr_0672at 762.212 kb on + strand, within Psyr_0672at 762.212 kb on + strand, within Psyr_0672at 762.212 kb on + strand, within Psyr_0672at 762.212 kb on + strand, within Psyr_0672at 762.212 kb on + strand, within Psyr_0672at 762.212 kb on + strand, within Psyr_0672at 762.213 kb on - strand, within Psyr_0672at 762.213 kb on - strand, within Psyr_0672at 762.213 kb on - strand, within Psyr_0672at 762.213 kb on - strand, within Psyr_0672at 762.213 kb on - strand, within Psyr_0672at 762.213 kb on - strand, within Psyr_0672at 762.213 kb on - strand, within Psyr_0672at 762.213 kb on - strand, within Psyr_0672at 762.235 kb on - strand, within Psyr_0672at 763.192 kb on + strand, within Psyr_0673at 763.193 kb on - strand, within Psyr_0673at 763.193 kb on - strand, within Psyr_0673at 763.193 kb on - strand, within Psyr_0673at 763.295 kb on + strand, within Psyr_0673at 763.296 kb on - strand, within Psyr_0673at 763.296 kb on - strand, within Psyr_0673at 763.449 kb on + strand, within Psyr_0673

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Chaulmoogric 10 mM
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760,435 + -0.7
760,435 + -0.2
760,435 + -0.6
760,435 + +1.2
760,435 + -0.1
760,435 + +0.4
760,435 + -0.7
760,435 + +1.2
760,435 + +1.1
760,436 - -0.2
760,436 - +2.0
760,436 - +0.0
760,436 - -1.2
760,436 - -0.9
760,436 - -0.5
760,436 - -0.3
760,436 - +3.1
760,441 + -0.5
760,441 + -1.7
760,441 + -2.2
760,441 + -0.9
760,492 + -1.3
760,493 - +1.1
760,552 + Psyr_0671 0.11 -0.3
760,552 + Psyr_0671 0.11 +0.4
760,552 + Psyr_0671 0.11 +1.9
760,552 + Psyr_0671 0.11 +0.4
760,552 + Psyr_0671 0.11 -0.1
760,553 - Psyr_0671 0.11 -0.2
760,553 - Psyr_0671 0.11 +1.1
760,553 - Psyr_0671 0.11 +0.4
760,553 - Psyr_0671 0.11 +0.0
760,553 - Psyr_0671 0.11 -1.2
760,553 - Psyr_0671 0.11 +1.4
760,639 + Psyr_0671 0.20 +1.7
760,640 - Psyr_0671 0.21 +1.8
760,745 - Psyr_0671 0.32 +0.1
760,759 + Psyr_0671 0.33 +0.7
760,760 - Psyr_0671 0.33 -0.6
760,760 - Psyr_0671 0.33 -1.3
760,939 + Psyr_0671 0.53 +1.7
760,940 - Psyr_0671 0.53 -0.9
760,940 - Psyr_0671 0.53 +3.4
761,345 - +1.1
761,351 + -1.5
761,352 - +2.4
761,352 - +0.2
761,550 + Psyr_0672 0.16 -0.2
761,550 + Psyr_0672 0.16 -0.9
761,550 + Psyr_0672 0.16 -0.1
761,551 - Psyr_0672 0.16 +1.2
761,551 - Psyr_0672 0.16 +3.9
761,551 - Psyr_0672 0.16 -0.3
761,631 + Psyr_0672 0.23 +0.2
761,868 + Psyr_0672 0.45 -0.4
761,988 + Psyr_0672 0.56 -0.7
761,988 + Psyr_0672 0.56 +0.5
761,988 + Psyr_0672 0.56 +0.3
761,989 - Psyr_0672 0.56 +1.4
761,989 - Psyr_0672 0.56 +2.8
761,989 - Psyr_0672 0.56 -1.3
761,989 - Psyr_0672 0.56 -1.1
762,012 + Psyr_0672 0.58 -0.6
762,012 + Psyr_0672 0.58 +0.0
762,012 + Psyr_0672 0.58 +1.3
762,012 + Psyr_0672 0.58 -0.9
762,012 + Psyr_0672 0.58 -0.6
762,013 - Psyr_0672 0.58 +1.9
762,013 - Psyr_0672 0.58 -0.0
762,013 - Psyr_0672 0.58 -0.3
762,013 - Psyr_0672 0.58 +0.8
762,013 - Psyr_0672 0.58 +1.5
762,013 - Psyr_0672 0.58 +0.5
762,013 - Psyr_0672 0.58 -0.3
762,025 + Psyr_0672 0.59 +0.3
762,155 - Psyr_0672 0.71 +1.1
762,212 + Psyr_0672 0.76 -0.5
762,212 + Psyr_0672 0.76 +1.7
762,212 + Psyr_0672 0.76 +0.3
762,212 + Psyr_0672 0.76 +0.4
762,212 + Psyr_0672 0.76 +0.1
762,212 + Psyr_0672 0.76 +1.5
762,212 + Psyr_0672 0.76 +1.6
762,212 + Psyr_0672 0.76 +0.5
762,212 + Psyr_0672 0.76 +3.1
762,212 + Psyr_0672 0.76 +0.5
762,212 + Psyr_0672 0.76 +0.9
762,212 + Psyr_0672 0.76 +0.4
762,212 + Psyr_0672 0.76 -0.9
762,212 + Psyr_0672 0.76 +0.4
762,212 + Psyr_0672 0.76 -0.5
762,213 - Psyr_0672 0.76 -0.3
762,213 - Psyr_0672 0.76 -0.1
762,213 - Psyr_0672 0.76 +1.8
762,213 - Psyr_0672 0.76 -0.3
762,213 - Psyr_0672 0.76 -0.9
762,213 - Psyr_0672 0.76 -0.7
762,213 - Psyr_0672 0.76 +1.1
762,213 - Psyr_0672 0.76 +0.0
762,235 - Psyr_0672 0.78 -0.8
763,192 + Psyr_0673 0.45 +0.5
763,193 - Psyr_0673 0.45 +0.8
763,193 - Psyr_0673 0.45 +0.1
763,193 - Psyr_0673 0.45 -0.6
763,295 + Psyr_0673 0.52 -1.0
763,296 - Psyr_0673 0.52 +0.1
763,296 - Psyr_0673 0.52 -0.3
763,449 + Psyr_0673 0.62 +1.1

Or see this region's nucleotide sequence