Experiment: D-Lysine 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0774 and PP_0775 are separated by 31 nucleotides PP_0775 and PP_0776 overlap by 2 nucleotides PP_0776 and PP_0777 are separated by 145 nucleotides PP_0777 and PP_0778 are separated by 63 nucleotides
PP_0774: PP_0774 - Phosphate acetyltransferase, at 891,627 to 893,714
_0774
PP_0775: PP_0775 - conserved protein of unknown function, at 893,746 to 894,048
_0775
PP_0776: PP_0776 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 894,047 to 894,532
_0776
PP_0777: PP_0777 - Glutathione peroxidase, at 894,678 to 895,160
_0777
PP_0778: PP_0778 - Glycosyl transferase, group 1 family protein, at 895,224 to 896,414
_0778
Position (kb) 894
895
896 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 893.731 kb on - strand at 893.731 kb on - strand at 893.761 kb on - strand at 894.004 kb on + strand, within PP_0775 at 894.004 kb on + strand, within PP_0775 at 894.005 kb on - strand, within PP_0775 at 894.019 kb on + strand at 894.083 kb on + strand at 894.083 kb on + strand at 894.084 kb on - strand at 894.084 kb on - strand at 894.084 kb on - strand at 894.085 kb on + strand at 894.086 kb on - strand at 894.166 kb on + strand, within PP_0776 at 894.248 kb on + strand, within PP_0776 at 894.257 kb on + strand, within PP_0776 at 894.544 kb on - strand at 894.544 kb on - strand at 894.624 kb on + strand at 894.624 kb on + strand at 894.801 kb on + strand, within PP_0777 at 894.823 kb on - strand, within PP_0777 at 894.831 kb on + strand, within PP_0777 at 894.832 kb on - strand, within PP_0777 at 894.832 kb on - strand, within PP_0777 at 894.832 kb on - strand, within PP_0777 at 894.934 kb on - strand, within PP_0777 at 894.934 kb on - strand, within PP_0777 at 894.997 kb on - strand, within PP_0777 at 894.997 kb on - strand, within PP_0777 at 895.040 kb on + strand, within PP_0777 at 895.040 kb on + strand, within PP_0777 at 895.040 kb on + strand, within PP_0777 at 895.041 kb on - strand, within PP_0777 at 895.041 kb on - strand, within PP_0777 at 895.263 kb on - strand at 895.295 kb on - strand at 895.467 kb on - strand, within PP_0778 at 895.467 kb on - strand, within PP_0778 at 895.492 kb on + strand, within PP_0778 at 895.492 kb on + strand, within PP_0778 at 895.493 kb on - strand, within PP_0778 at 895.501 kb on - strand, within PP_0778 at 895.588 kb on + strand, within PP_0778 at 895.588 kb on + strand, within PP_0778 at 895.589 kb on - strand, within PP_0778 at 895.589 kb on - strand, within PP_0778 at 895.711 kb on + strand, within PP_0778 at 895.722 kb on + strand, within PP_0778 at 895.981 kb on + strand, within PP_0778 at 895.981 kb on + strand, within PP_0778 at 895.981 kb on + strand, within PP_0778 at 895.982 kb on - strand, within PP_0778 at 895.982 kb on - strand, within PP_0778 at 896.017 kb on + strand, within PP_0778 at 896.018 kb on - strand, within PP_0778 at 896.018 kb on - strand, within PP_0778 at 896.029 kb on + strand, within PP_0778 at 896.029 kb on + strand, within PP_0778 at 896.128 kb on + strand, within PP_0778 at 896.128 kb on + strand, within PP_0778 at 896.128 kb on + strand, within PP_0778 at 896.129 kb on - strand, within PP_0778 at 896.129 kb on - strand, within PP_0778 at 896.129 kb on - strand, within PP_0778 at 896.129 kb on - strand, within PP_0778 at 896.134 kb on - strand, within PP_0778 at 896.134 kb on - strand, within PP_0778 at 896.134 kb on - strand, within PP_0778 at 896.134 kb on - strand, within PP_0778
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lysine 10 mM (C) remove 893,731 - +0.7 893,731 - +1.3 893,761 - +1.3 894,004 + PP_0775 0.85 -0.9 894,004 + PP_0775 0.85 -0.1 894,005 - PP_0775 0.85 -1.1 894,019 + +1.2 894,083 + +1.5 894,083 + -1.0 894,084 - +2.0 894,084 - +0.8 894,084 - -0.3 894,085 + -0.3 894,086 - +2.0 894,166 + PP_0776 0.24 -2.7 894,248 + PP_0776 0.41 -0.8 894,257 + PP_0776 0.43 -0.5 894,544 - +0.7 894,544 - -1.5 894,624 + +1.5 894,624 + -0.5 894,801 + PP_0777 0.25 -0.8 894,823 - PP_0777 0.30 -3.4 894,831 + PP_0777 0.32 -2.8 894,832 - PP_0777 0.32 -0.0 894,832 - PP_0777 0.32 -0.1 894,832 - PP_0777 0.32 +0.7 894,934 - PP_0777 0.53 -0.2 894,934 - PP_0777 0.53 -2.0 894,997 - PP_0777 0.66 -1.6 894,997 - PP_0777 0.66 -0.2 895,040 + PP_0777 0.75 +0.2 895,040 + PP_0777 0.75 +0.4 895,040 + PP_0777 0.75 -1.0 895,041 - PP_0777 0.75 -0.3 895,041 - PP_0777 0.75 -0.5 895,263 - +0.3 895,295 - -1.8 895,467 - PP_0778 0.20 -3.2 895,467 - PP_0778 0.20 -2.2 895,492 + PP_0778 0.23 -2.8 895,492 + PP_0778 0.23 +0.4 895,493 - PP_0778 0.23 +0.4 895,501 - PP_0778 0.23 -2.0 895,588 + PP_0778 0.31 +1.3 895,588 + PP_0778 0.31 -0.8 895,589 - PP_0778 0.31 -0.6 895,589 - PP_0778 0.31 -1.7 895,711 + PP_0778 0.41 -2.0 895,722 + PP_0778 0.42 -0.2 895,981 + PP_0778 0.64 +0.3 895,981 + PP_0778 0.64 +0.8 895,981 + PP_0778 0.64 +0.8 895,982 - PP_0778 0.64 +1.0 895,982 - PP_0778 0.64 -0.5 896,017 + PP_0778 0.67 -2.1 896,018 - PP_0778 0.67 +1.5 896,018 - PP_0778 0.67 +0.5 896,029 + PP_0778 0.68 +1.3 896,029 + PP_0778 0.68 -0.0 896,128 + PP_0778 0.76 +0.7 896,128 + PP_0778 0.76 +0.2 896,128 + PP_0778 0.76 -0.6 896,129 - PP_0778 0.76 +0.7 896,129 - PP_0778 0.76 +0.3 896,129 - PP_0778 0.76 -1.6 896,129 - PP_0778 0.76 -1.5 896,134 - PP_0778 0.76 +0.1 896,134 - PP_0778 0.76 -0.7 896,134 - PP_0778 0.76 -1.5 896,134 - PP_0778 0.76 +1.3
Or see this region's nucleotide sequence