Experiment: D-Lysine 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0546 and PP_0547 are separated by 66 nucleotides PP_0547 and PP_0548 overlap by 4 nucleotides PP_0548 and PP_0549 overlap by 4 nucleotides
PP_0546: PP_0546 - sigma-54 dependent transcriptional regulator, at 633,695 to 635,710
_0546
PP_0547: PP_0547 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 635,777 to 637,126
_0547
PP_0548: PP_0548 - putative phenylacrylic acid decarboxylase, padA1, at 637,123 to 637,752
_0548
PP_0549: PP_0549 - putative Lipoprotein, at 637,749 to 638,036
_0549
Position (kb) 635
636
637
638 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 634.864 kb on + strand, within PP_0546 at 634.865 kb on - strand, within PP_0546 at 634.865 kb on - strand, within PP_0546 at 635.000 kb on + strand, within PP_0546 at 635.000 kb on - strand, within PP_0546 at 635.104 kb on + strand, within PP_0546 at 635.159 kb on + strand, within PP_0546 at 635.159 kb on + strand, within PP_0546 at 635.160 kb on - strand, within PP_0546 at 635.160 kb on - strand, within PP_0546 at 635.160 kb on - strand, within PP_0546 at 635.160 kb on - strand, within PP_0546 at 635.160 kb on - strand, within PP_0546 at 635.160 kb on - strand, within PP_0546 at 635.162 kb on + strand, within PP_0546 at 635.268 kb on + strand, within PP_0546 at 635.269 kb on - strand, within PP_0546 at 635.269 kb on - strand, within PP_0546 at 635.269 kb on - strand, within PP_0546 at 635.308 kb on + strand, within PP_0546 at 635.383 kb on + strand, within PP_0546 at 635.383 kb on + strand, within PP_0546 at 635.662 kb on + strand at 635.663 kb on - strand at 635.663 kb on - strand at 635.696 kb on - strand at 635.782 kb on + strand at 635.782 kb on + strand at 635.782 kb on + strand at 635.879 kb on + strand at 636.014 kb on + strand, within PP_0547 at 636.038 kb on + strand, within PP_0547 at 636.038 kb on + strand, within PP_0547 at 636.038 kb on + strand, within PP_0547 at 636.657 kb on + strand, within PP_0547 at 636.657 kb on + strand, within PP_0547 at 636.657 kb on + strand, within PP_0547 at 636.738 kb on + strand, within PP_0547 at 636.755 kb on + strand, within PP_0547 at 636.755 kb on + strand, within PP_0547 at 636.755 kb on + strand, within PP_0547 at 636.755 kb on + strand, within PP_0547 at 636.932 kb on + strand, within PP_0547 at 636.932 kb on + strand, within PP_0547 at 637.849 kb on - strand, within PP_0549 at 637.872 kb on + strand, within PP_0549 at 637.872 kb on + strand, within PP_0549 at 637.872 kb on + strand, within PP_0549 at 637.872 kb on + strand, within PP_0549 at 637.872 kb on + strand, within PP_0549 at 637.873 kb on - strand, within PP_0549 at 637.873 kb on - strand, within PP_0549 at 637.908 kb on + strand, within PP_0549 at 638.008 kb on + strand at 638.009 kb on - strand at 638.009 kb on - strand at 638.064 kb on + strand at 638.065 kb on - strand at 638.065 kb on - strand at 638.074 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lysine 10 mM (C) remove 634,864 + PP_0546 0.58 +0.0 634,865 - PP_0546 0.58 -1.2 634,865 - PP_0546 0.58 -1.1 635,000 + PP_0546 0.65 +0.3 635,000 - PP_0546 0.65 +0.5 635,104 + PP_0546 0.70 -0.5 635,159 + PP_0546 0.73 -2.8 635,159 + PP_0546 0.73 +0.1 635,160 - PP_0546 0.73 -0.0 635,160 - PP_0546 0.73 -1.3 635,160 - PP_0546 0.73 -0.1 635,160 - PP_0546 0.73 +0.6 635,160 - PP_0546 0.73 -0.0 635,160 - PP_0546 0.73 +0.8 635,162 + PP_0546 0.73 +0.4 635,268 + PP_0546 0.78 +1.3 635,269 - PP_0546 0.78 +0.7 635,269 - PP_0546 0.78 -2.3 635,269 - PP_0546 0.78 -0.0 635,308 + PP_0546 0.80 +0.6 635,383 + PP_0546 0.84 -0.1 635,383 + PP_0546 0.84 -1.6 635,662 + +0.1 635,663 - +1.0 635,663 - -0.3 635,696 - -3.1 635,782 + +4.2 635,782 + +4.8 635,782 + +3.3 635,879 + +3.5 636,014 + PP_0547 0.18 +3.3 636,038 + PP_0547 0.19 +3.3 636,038 + PP_0547 0.19 +4.4 636,038 + PP_0547 0.19 +4.3 636,657 + PP_0547 0.65 +3.4 636,657 + PP_0547 0.65 +4.4 636,657 + PP_0547 0.65 +3.6 636,738 + PP_0547 0.71 +3.9 636,755 + PP_0547 0.72 +4.3 636,755 + PP_0547 0.72 +3.9 636,755 + PP_0547 0.72 +3.4 636,755 + PP_0547 0.72 +3.8 636,932 + PP_0547 0.86 +3.1 636,932 + PP_0547 0.86 +4.1 637,849 - PP_0549 0.35 -0.9 637,872 + PP_0549 0.43 -1.1 637,872 + PP_0549 0.43 +0.4 637,872 + PP_0549 0.43 +0.1 637,872 + PP_0549 0.43 +0.6 637,872 + PP_0549 0.43 -0.3 637,873 - PP_0549 0.43 -0.2 637,873 - PP_0549 0.43 +0.0 637,908 + PP_0549 0.55 -1.1 638,008 + -3.2 638,009 - +1.8 638,009 - +0.3 638,064 + +1.2 638,065 - +0.3 638,065 - +0.1 638,074 + -0.1
Or see this region's nucleotide sequence