Experiment: KB with Sclareolide 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3874 and Psyr_3875 are separated by 77 nucleotides Psyr_3875 and Psyr_3876 overlap by 4 nucleotides Psyr_3876 and Psyr_3877 are separated by 12 nucleotides
Psyr_3874: Psyr_3874 - amino acid ABC transporter substrate-binding protein, PAAT family, at 4,615,411 to 4,616,193
_3874
Psyr_3875: Psyr_3875 - amino acid ABC transporter membrane protein 1, PAAT family, at 4,616,271 to 4,616,999
_3875
Psyr_3876: Psyr_3876 - amino acid ABC transporter membrane protein 2, PAAT family, at 4,616,996 to 4,617,706
_3876
Psyr_3877: Psyr_3877 - Succinylglutamate desuccinylase/aspartoacylase, at 4,617,719 to 4,618,837
_3877
Position (kb) 4616
4617
4618 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4616.009 kb on - strand, within Psyr_3874 at 4616.137 kb on + strand at 4616.137 kb on + strand at 4616.137 kb on + strand at 4616.138 kb on - strand at 4616.138 kb on - strand at 4616.138 kb on - strand at 4616.138 kb on - strand at 4616.138 kb on - strand at 4616.191 kb on + strand at 4616.191 kb on + strand at 4616.191 kb on + strand at 4616.191 kb on + strand at 4616.192 kb on - strand at 4616.192 kb on - strand at 4616.267 kb on - strand at 4616.466 kb on + strand, within Psyr_3875 at 4616.466 kb on + strand, within Psyr_3875 at 4616.467 kb on - strand, within Psyr_3875 at 4616.467 kb on - strand, within Psyr_3875 at 4616.571 kb on + strand, within Psyr_3875 at 4616.571 kb on + strand, within Psyr_3875 at 4616.571 kb on + strand, within Psyr_3875 at 4616.571 kb on + strand, within Psyr_3875 at 4616.572 kb on - strand, within Psyr_3875 at 4616.572 kb on - strand, within Psyr_3875 at 4616.572 kb on - strand, within Psyr_3875 at 4616.572 kb on - strand, within Psyr_3875 at 4616.622 kb on + strand, within Psyr_3875 at 4616.622 kb on + strand, within Psyr_3875 at 4616.622 kb on + strand, within Psyr_3875 at 4616.622 kb on + strand, within Psyr_3875 at 4616.623 kb on - strand, within Psyr_3875 at 4616.623 kb on - strand, within Psyr_3875 at 4616.631 kb on + strand, within Psyr_3875 at 4616.631 kb on + strand, within Psyr_3875 at 4616.632 kb on - strand, within Psyr_3875 at 4616.874 kb on + strand, within Psyr_3875 at 4616.875 kb on - strand, within Psyr_3875 at 4616.875 kb on - strand, within Psyr_3875 at 4616.886 kb on + strand, within Psyr_3875 at 4616.887 kb on - strand, within Psyr_3875 at 4616.913 kb on + strand, within Psyr_3875 at 4616.913 kb on + strand, within Psyr_3875 at 4616.914 kb on - strand, within Psyr_3875 at 4616.967 kb on + strand at 4616.967 kb on + strand at 4616.968 kb on - strand at 4616.968 kb on - strand at 4617.036 kb on - strand at 4617.036 kb on - strand at 4617.037 kb on + strand at 4617.037 kb on + strand at 4617.037 kb on + strand at 4617.037 kb on + strand at 4617.037 kb on + strand at 4617.037 kb on + strand at 4617.037 kb on + strand at 4617.037 kb on + strand at 4617.038 kb on - strand at 4617.038 kb on - strand at 4617.038 kb on - strand at 4617.179 kb on + strand, within Psyr_3876 at 4617.179 kb on + strand, within Psyr_3876 at 4617.179 kb on + strand, within Psyr_3876 at 4617.179 kb on + strand, within Psyr_3876 at 4617.180 kb on - strand, within Psyr_3876 at 4617.180 kb on - strand, within Psyr_3876 at 4617.180 kb on - strand, within Psyr_3876 at 4617.180 kb on - strand, within Psyr_3876 at 4617.180 kb on - strand, within Psyr_3876 at 4617.180 kb on - strand, within Psyr_3876 at 4617.185 kb on + strand, within Psyr_3876 at 4617.185 kb on + strand, within Psyr_3876 at 4617.185 kb on + strand, within Psyr_3876 at 4617.185 kb on + strand, within Psyr_3876 at 4617.185 kb on + strand, within Psyr_3876 at 4617.186 kb on - strand, within Psyr_3876 at 4617.209 kb on + strand, within Psyr_3876 at 4617.209 kb on + strand, within Psyr_3876 at 4617.209 kb on + strand, within Psyr_3876 at 4617.209 kb on + strand, within Psyr_3876 at 4617.209 kb on + strand, within Psyr_3876 at 4617.209 kb on + strand, within Psyr_3876 at 4617.209 kb on + strand, within Psyr_3876 at 4617.210 kb on - strand, within Psyr_3876 at 4617.210 kb on - strand, within Psyr_3876 at 4617.210 kb on - strand, within Psyr_3876 at 4617.210 kb on - strand, within Psyr_3876 at 4617.210 kb on - strand, within Psyr_3876 at 4617.210 kb on - strand, within Psyr_3876 at 4617.210 kb on - strand, within Psyr_3876 at 4617.211 kb on + strand, within Psyr_3876 at 4617.211 kb on + strand, within Psyr_3876 at 4617.211 kb on + strand, within Psyr_3876 at 4617.211 kb on + strand, within Psyr_3876 at 4617.211 kb on + strand, within Psyr_3876 at 4617.212 kb on - strand, within Psyr_3876 at 4617.212 kb on - strand, within Psyr_3876 at 4617.212 kb on - strand, within Psyr_3876 at 4617.213 kb on + strand, within Psyr_3876 at 4617.213 kb on + strand, within Psyr_3876 at 4617.213 kb on + strand, within Psyr_3876 at 4617.213 kb on + strand, within Psyr_3876 at 4617.213 kb on + strand, within Psyr_3876 at 4617.213 kb on + strand, within Psyr_3876 at 4617.213 kb on + strand, within Psyr_3876 at 4617.213 kb on + strand, within Psyr_3876 at 4617.214 kb on - strand, within Psyr_3876 at 4617.214 kb on - strand, within Psyr_3876 at 4617.214 kb on - strand, within Psyr_3876 at 4617.214 kb on - strand, within Psyr_3876 at 4617.214 kb on - strand, within Psyr_3876 at 4617.214 kb on - strand, within Psyr_3876 at 4617.214 kb on - strand, within Psyr_3876 at 4617.214 kb on - strand, within Psyr_3876 at 4617.214 kb on - strand, within Psyr_3876 at 4617.214 kb on - strand, within Psyr_3876 at 4617.214 kb on - strand, within Psyr_3876 at 4617.214 kb on - strand, within Psyr_3876 at 4617.214 kb on - strand, within Psyr_3876 at 4617.214 kb on - strand, within Psyr_3876 at 4617.214 kb on - strand, within Psyr_3876 at 4617.214 kb on - strand, within Psyr_3876 at 4617.214 kb on - strand, within Psyr_3876 at 4617.231 kb on - strand, within Psyr_3876 at 4617.242 kb on + strand, within Psyr_3876 at 4617.242 kb on + strand, within Psyr_3876 at 4617.243 kb on - strand, within Psyr_3876 at 4617.243 kb on - strand, within Psyr_3876 at 4617.243 kb on - strand, within Psyr_3876 at 4617.243 kb on - strand, within Psyr_3876 at 4617.243 kb on - strand, within Psyr_3876 at 4617.243 kb on - strand, within Psyr_3876 at 4617.341 kb on + strand, within Psyr_3876 at 4617.342 kb on - strand, within Psyr_3876 at 4617.440 kb on + strand, within Psyr_3876 at 4617.441 kb on - strand, within Psyr_3876 at 4617.441 kb on - strand, within Psyr_3876 at 4617.495 kb on + strand, within Psyr_3876 at 4617.495 kb on + strand, within Psyr_3876 at 4617.495 kb on + strand, within Psyr_3876 at 4617.495 kb on + strand, within Psyr_3876 at 4617.495 kb on + strand, within Psyr_3876 at 4617.495 kb on + strand, within Psyr_3876 at 4617.495 kb on + strand, within Psyr_3876 at 4617.495 kb on + strand, within Psyr_3876 at 4617.496 kb on - strand, within Psyr_3876 at 4617.496 kb on - strand, within Psyr_3876 at 4617.496 kb on - strand, within Psyr_3876 at 4617.496 kb on - strand, within Psyr_3876 at 4617.496 kb on - strand, within Psyr_3876 at 4617.496 kb on - strand, within Psyr_3876 at 4617.498 kb on + strand, within Psyr_3876 at 4617.498 kb on + strand, within Psyr_3876 at 4617.499 kb on - strand, within Psyr_3876 at 4617.499 kb on - strand, within Psyr_3876 at 4617.499 kb on - strand, within Psyr_3876 at 4617.499 kb on - strand, within Psyr_3876 at 4617.499 kb on - strand, within Psyr_3876 at 4617.623 kb on + strand, within Psyr_3876 at 4617.623 kb on + strand, within Psyr_3876 at 4617.624 kb on - strand, within Psyr_3876 at 4617.624 kb on - strand, within Psyr_3876 at 4617.624 kb on - strand, within Psyr_3876 at 4617.624 kb on - strand, within Psyr_3876 at 4617.730 kb on + strand at 4617.731 kb on - strand at 4617.818 kb on + strand at 4617.818 kb on + strand at 4617.818 kb on + strand at 4617.818 kb on + strand at 4617.818 kb on + strand at 4617.819 kb on - strand at 4617.819 kb on - strand at 4617.819 kb on - strand at 4617.819 kb on - strand at 4617.819 kb on - strand at 4617.819 kb on - strand at 4617.819 kb on - strand at 4617.819 kb on - strand at 4618.253 kb on + strand, within Psyr_3877 at 4618.253 kb on + strand, within Psyr_3877 at 4618.254 kb on - strand, within Psyr_3877
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Sclareolide 10 mM remove 4,616,009 - Psyr_3874 0.76 -0.2 4,616,137 + -0.9 4,616,137 + +0.4 4,616,137 + +0.2 4,616,138 - -0.7 4,616,138 - +0.5 4,616,138 - -0.1 4,616,138 - -3.4 4,616,138 - +0.9 4,616,191 + +0.7 4,616,191 + +0.6 4,616,191 + -0.1 4,616,191 + +1.2 4,616,192 - +0.7 4,616,192 - -2.7 4,616,267 - -0.1 4,616,466 + Psyr_3875 0.27 +0.2 4,616,466 + Psyr_3875 0.27 -1.7 4,616,467 - Psyr_3875 0.27 +1.4 4,616,467 - Psyr_3875 0.27 -0.7 4,616,571 + Psyr_3875 0.41 +0.4 4,616,571 + Psyr_3875 0.41 -1.3 4,616,571 + Psyr_3875 0.41 -0.2 4,616,571 + Psyr_3875 0.41 +0.2 4,616,572 - Psyr_3875 0.41 -1.1 4,616,572 - Psyr_3875 0.41 -1.1 4,616,572 - Psyr_3875 0.41 +1.1 4,616,572 - Psyr_3875 0.41 -0.7 4,616,622 + Psyr_3875 0.48 -0.2 4,616,622 + Psyr_3875 0.48 +0.9 4,616,622 + Psyr_3875 0.48 +0.9 4,616,622 + Psyr_3875 0.48 -0.7 4,616,623 - Psyr_3875 0.48 -1.1 4,616,623 - Psyr_3875 0.48 -0.7 4,616,631 + Psyr_3875 0.49 +0.2 4,616,631 + Psyr_3875 0.49 +1.6 4,616,632 - Psyr_3875 0.50 -0.1 4,616,874 + Psyr_3875 0.83 -1.1 4,616,875 - Psyr_3875 0.83 -0.0 4,616,875 - Psyr_3875 0.83 -0.9 4,616,886 + Psyr_3875 0.84 +1.5 4,616,887 - Psyr_3875 0.84 -2.1 4,616,913 + Psyr_3875 0.88 -0.1 4,616,913 + Psyr_3875 0.88 +0.3 4,616,914 - Psyr_3875 0.88 +0.7 4,616,967 + -1.1 4,616,967 + +0.2 4,616,968 - -0.1 4,616,968 - -0.1 4,617,036 - -0.3 4,617,036 - +1.9 4,617,037 + -0.1 4,617,037 + -0.9 4,617,037 + -0.2 4,617,037 + -0.0 4,617,037 + +1.7 4,617,037 + +1.2 4,617,037 + -1.8 4,617,037 + +2.3 4,617,038 - -0.1 4,617,038 - +0.8 4,617,038 - +0.0 4,617,179 + Psyr_3876 0.26 -1.2 4,617,179 + Psyr_3876 0.26 +0.9 4,617,179 + Psyr_3876 0.26 -0.5 4,617,179 + Psyr_3876 0.26 -1.2 4,617,180 - Psyr_3876 0.26 -2.0 4,617,180 - Psyr_3876 0.26 -1.4 4,617,180 - Psyr_3876 0.26 +0.3 4,617,180 - Psyr_3876 0.26 +0.1 4,617,180 - Psyr_3876 0.26 -0.8 4,617,180 - Psyr_3876 0.26 -0.2 4,617,185 + Psyr_3876 0.27 +1.4 4,617,185 + Psyr_3876 0.27 +0.6 4,617,185 + Psyr_3876 0.27 -1.0 4,617,185 + Psyr_3876 0.27 -0.5 4,617,185 + Psyr_3876 0.27 +1.6 4,617,186 - Psyr_3876 0.27 +1.7 4,617,209 + Psyr_3876 0.30 -1.1 4,617,209 + Psyr_3876 0.30 -3.3 4,617,209 + Psyr_3876 0.30 +2.3 4,617,209 + Psyr_3876 0.30 +1.2 4,617,209 + Psyr_3876 0.30 -1.8 4,617,209 + Psyr_3876 0.30 -0.6 4,617,209 + Psyr_3876 0.30 -0.8 4,617,210 - Psyr_3876 0.30 +1.2 4,617,210 - Psyr_3876 0.30 -1.7 4,617,210 - Psyr_3876 0.30 +3.9 4,617,210 - Psyr_3876 0.30 -0.2 4,617,210 - Psyr_3876 0.30 +0.9 4,617,210 - Psyr_3876 0.30 +4.2 4,617,210 - Psyr_3876 0.30 +0.2 4,617,211 + Psyr_3876 0.30 -1.7 4,617,211 + Psyr_3876 0.30 -0.8 4,617,211 + Psyr_3876 0.30 -1.7 4,617,211 + Psyr_3876 0.30 -0.5 4,617,211 + Psyr_3876 0.30 +1.5 4,617,212 - Psyr_3876 0.30 +0.9 4,617,212 - Psyr_3876 0.30 -1.9 4,617,212 - Psyr_3876 0.30 +1.0 4,617,213 + Psyr_3876 0.31 -1.8 4,617,213 + Psyr_3876 0.31 +0.7 4,617,213 + Psyr_3876 0.31 -1.1 4,617,213 + Psyr_3876 0.31 +0.9 4,617,213 + Psyr_3876 0.31 +0.3 4,617,213 + Psyr_3876 0.31 +0.3 4,617,213 + Psyr_3876 0.31 +0.9 4,617,213 + Psyr_3876 0.31 -1.4 4,617,214 - Psyr_3876 0.31 +0.6 4,617,214 - Psyr_3876 0.31 +0.8 4,617,214 - Psyr_3876 0.31 -0.7 4,617,214 - Psyr_3876 0.31 -0.5 4,617,214 - Psyr_3876 0.31 +1.4 4,617,214 - Psyr_3876 0.31 -1.1 4,617,214 - Psyr_3876 0.31 +0.1 4,617,214 - Psyr_3876 0.31 +0.7 4,617,214 - Psyr_3876 0.31 -0.5 4,617,214 - Psyr_3876 0.31 -1.1 4,617,214 - Psyr_3876 0.31 -0.3 4,617,214 - Psyr_3876 0.31 -0.0 4,617,214 - Psyr_3876 0.31 -1.1 4,617,214 - Psyr_3876 0.31 +0.3 4,617,214 - Psyr_3876 0.31 -1.0 4,617,214 - Psyr_3876 0.31 -0.1 4,617,214 - Psyr_3876 0.31 -0.0 4,617,231 - Psyr_3876 0.33 -0.7 4,617,242 + Psyr_3876 0.35 +0.1 4,617,242 + Psyr_3876 0.35 -0.8 4,617,243 - Psyr_3876 0.35 +0.5 4,617,243 - Psyr_3876 0.35 -0.1 4,617,243 - Psyr_3876 0.35 +0.9 4,617,243 - Psyr_3876 0.35 +0.8 4,617,243 - Psyr_3876 0.35 +0.9 4,617,243 - Psyr_3876 0.35 +0.9 4,617,341 + Psyr_3876 0.49 -0.4 4,617,342 - Psyr_3876 0.49 -0.6 4,617,440 + Psyr_3876 0.62 -0.6 4,617,441 - Psyr_3876 0.63 -0.7 4,617,441 - Psyr_3876 0.63 +0.4 4,617,495 + Psyr_3876 0.70 -0.8 4,617,495 + Psyr_3876 0.70 +1.8 4,617,495 + Psyr_3876 0.70 +0.5 4,617,495 + Psyr_3876 0.70 +0.2 4,617,495 + Psyr_3876 0.70 -1.7 4,617,495 + Psyr_3876 0.70 -0.1 4,617,495 + Psyr_3876 0.70 -2.3 4,617,495 + Psyr_3876 0.70 +0.4 4,617,496 - Psyr_3876 0.70 -1.5 4,617,496 - Psyr_3876 0.70 -2.5 4,617,496 - Psyr_3876 0.70 +1.2 4,617,496 - Psyr_3876 0.70 +0.2 4,617,496 - Psyr_3876 0.70 +0.5 4,617,496 - Psyr_3876 0.70 +1.8 4,617,498 + Psyr_3876 0.71 -0.8 4,617,498 + Psyr_3876 0.71 -1.0 4,617,499 - Psyr_3876 0.71 +0.3 4,617,499 - Psyr_3876 0.71 +1.1 4,617,499 - Psyr_3876 0.71 -0.2 4,617,499 - Psyr_3876 0.71 -0.0 4,617,499 - Psyr_3876 0.71 -0.3 4,617,623 + Psyr_3876 0.88 -0.7 4,617,623 + Psyr_3876 0.88 -3.3 4,617,624 - Psyr_3876 0.88 +0.1 4,617,624 - Psyr_3876 0.88 -1.3 4,617,624 - Psyr_3876 0.88 -2.4 4,617,624 - Psyr_3876 0.88 +0.9 4,617,730 + -1.0 4,617,731 - +0.0 4,617,818 + -0.2 4,617,818 + -0.5 4,617,818 + +1.5 4,617,818 + -0.4 4,617,818 + -2.4 4,617,819 - +1.5 4,617,819 - +0.1 4,617,819 - -0.2 4,617,819 - -0.0 4,617,819 - -0.7 4,617,819 - -0.2 4,617,819 - +0.1 4,617,819 - -0.9 4,618,253 + Psyr_3877 0.48 +1.8 4,618,253 + Psyr_3877 0.48 -0.1 4,618,254 - Psyr_3877 0.48 -1.2
Or see this region's nucleotide sequence