Experiment: KB with Sclareolide 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3208 and Psyr_3209 are separated by 7 nucleotides Psyr_3209 and Psyr_3210 are separated by 106 nucleotides
Psyr_3208: Psyr_3208 - NADH dehydrogenase subunit M, at 3,839,648 to 3,841,180
_3208
Psyr_3209: Psyr_3209 - NADH dehydrogenase subunit N, at 3,841,188 to 3,842,657
_3209
Psyr_3210: Psyr_3210 - Protein of unknown function UPF0118, at 3,842,764 to 3,843,828
_3210
Position (kb) 3841
3842
3843 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 3840.315 kb on - strand, within Psyr_3208 at 3840.315 kb on - strand, within Psyr_3208 at 3840.644 kb on + strand, within Psyr_3208 at 3840.943 kb on - strand, within Psyr_3208 at 3841.084 kb on - strand at 3841.437 kb on - strand, within Psyr_3209 at 3841.674 kb on + strand, within Psyr_3209 at 3841.674 kb on + strand, within Psyr_3209 at 3842.015 kb on - strand, within Psyr_3209 at 3842.190 kb on + strand, within Psyr_3209 at 3842.349 kb on - strand, within Psyr_3209 at 3842.383 kb on - strand, within Psyr_3209 at 3842.490 kb on + strand, within Psyr_3209 at 3842.491 kb on - strand, within Psyr_3209 at 3842.647 kb on + strand at 3842.647 kb on + strand at 3842.647 kb on + strand at 3842.896 kb on - strand, within Psyr_3210 at 3843.032 kb on + strand, within Psyr_3210 at 3843.032 kb on + strand, within Psyr_3210 at 3843.033 kb on - strand, within Psyr_3210 at 3843.033 kb on - strand, within Psyr_3210 at 3843.033 kb on - strand, within Psyr_3210 at 3843.205 kb on + strand, within Psyr_3210 at 3843.205 kb on + strand, within Psyr_3210 at 3843.206 kb on - strand, within Psyr_3210 at 3843.311 kb on + strand, within Psyr_3210 at 3843.311 kb on + strand, within Psyr_3210 at 3843.312 kb on - strand, within Psyr_3210 at 3843.312 kb on - strand, within Psyr_3210 at 3843.312 kb on - strand, within Psyr_3210 at 3843.312 kb on - strand, within Psyr_3210 at 3843.312 kb on - strand, within Psyr_3210 at 3843.393 kb on - strand, within Psyr_3210 at 3843.554 kb on + strand, within Psyr_3210 at 3843.555 kb on - strand, within Psyr_3210
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Sclareolide 10 mM remove 3,840,315 - Psyr_3208 0.44 -1.6 3,840,315 - Psyr_3208 0.44 -1.2 3,840,644 + Psyr_3208 0.65 +1.9 3,840,943 - Psyr_3208 0.84 -0.1 3,841,084 - +2.5 3,841,437 - Psyr_3209 0.17 -2.8 3,841,674 + Psyr_3209 0.33 +0.9 3,841,674 + Psyr_3209 0.33 +0.0 3,842,015 - Psyr_3209 0.56 -1.9 3,842,190 + Psyr_3209 0.68 -1.2 3,842,349 - Psyr_3209 0.79 +2.5 3,842,383 - Psyr_3209 0.81 -0.7 3,842,490 + Psyr_3209 0.89 +1.9 3,842,491 - Psyr_3209 0.89 -1.4 3,842,647 + +2.9 3,842,647 + +4.2 3,842,647 + -0.2 3,842,896 - Psyr_3210 0.12 +0.9 3,843,032 + Psyr_3210 0.25 +0.1 3,843,032 + Psyr_3210 0.25 +0.2 3,843,033 - Psyr_3210 0.25 -0.3 3,843,033 - Psyr_3210 0.25 -0.6 3,843,033 - Psyr_3210 0.25 +0.4 3,843,205 + Psyr_3210 0.41 +0.9 3,843,205 + Psyr_3210 0.41 +0.4 3,843,206 - Psyr_3210 0.42 +0.1 3,843,311 + Psyr_3210 0.51 +0.2 3,843,311 + Psyr_3210 0.51 +1.0 3,843,312 - Psyr_3210 0.51 -1.6 3,843,312 - Psyr_3210 0.51 +1.4 3,843,312 - Psyr_3210 0.51 +3.9 3,843,312 - Psyr_3210 0.51 +1.3 3,843,312 - Psyr_3210 0.51 +1.2 3,843,393 - Psyr_3210 0.59 -0.0 3,843,554 + Psyr_3210 0.74 +0.9 3,843,555 - Psyr_3210 0.74 +0.2
Or see this region's nucleotide sequence