Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1061

Experiment: KB with Sclareolide 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_1060 and Psyr_1061 are separated by 2 nucleotidesPsyr_1061 and Psyr_1062 are separated by 40 nucleotides Psyr_1060: Psyr_1060 - Sel1-like repeat protein, at 1,200,514 to 1,201,926 _1060 Psyr_1061: Psyr_1061 - alginate biosynthesis protein Alg44, at 1,201,929 to 1,203,101 _1061 Psyr_1062: Psyr_1062 - alginate biosynthesis protein Alg8, at 1,203,142 to 1,204,623 _1062 Position (kb) 1201 1202 1203 1204Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1200.975 kb on - strand, within Psyr_1060at 1200.975 kb on - strand, within Psyr_1060at 1200.975 kb on - strand, within Psyr_1060at 1200.977 kb on + strand, within Psyr_1060at 1200.977 kb on + strand, within Psyr_1060at 1200.978 kb on - strand, within Psyr_1060at 1201.037 kb on + strand, within Psyr_1060at 1201.037 kb on + strand, within Psyr_1060at 1201.189 kb on + strand, within Psyr_1060at 1201.190 kb on - strand, within Psyr_1060at 1201.320 kb on - strand, within Psyr_1060at 1201.385 kb on + strand, within Psyr_1060at 1201.385 kb on + strand, within Psyr_1060at 1201.385 kb on + strand, within Psyr_1060at 1201.385 kb on + strand, within Psyr_1060at 1201.385 kb on + strand, within Psyr_1060at 1201.385 kb on + strand, within Psyr_1060at 1201.385 kb on + strand, within Psyr_1060at 1201.385 kb on + strand, within Psyr_1060at 1201.385 kb on + strand, within Psyr_1060at 1201.385 kb on + strand, within Psyr_1060at 1201.385 kb on + strand, within Psyr_1060at 1201.385 kb on + strand, within Psyr_1060at 1201.386 kb on - strand, within Psyr_1060at 1201.386 kb on - strand, within Psyr_1060at 1201.508 kb on + strand, within Psyr_1060at 1201.508 kb on + strand, within Psyr_1060at 1201.509 kb on - strand, within Psyr_1060at 1201.509 kb on - strand, within Psyr_1060at 1201.674 kb on - strand, within Psyr_1060at 1201.726 kb on - strand, within Psyr_1060at 1201.755 kb on - strand, within Psyr_1060at 1202.335 kb on + strand, within Psyr_1061at 1202.336 kb on - strand, within Psyr_1061at 1202.474 kb on + strand, within Psyr_1061at 1202.475 kb on - strand, within Psyr_1061at 1202.545 kb on + strand, within Psyr_1061at 1202.555 kb on - strand, within Psyr_1061at 1202.555 kb on - strand, within Psyr_1061at 1202.982 kb on + strand, within Psyr_1061at 1202.982 kb on + strand, within Psyr_1061at 1202.982 kb on + strand, within Psyr_1061at 1203.072 kb on + strandat 1203.072 kb on + strandat 1203.073 kb on - strandat 1203.073 kb on - strandat 1203.095 kb on + strandat 1203.095 kb on + strandat 1203.095 kb on + strandat 1203.095 kb on + strandat 1203.096 kb on - strandat 1203.250 kb on + strandat 1203.251 kb on - strandat 1203.302 kb on + strand, within Psyr_1062at 1203.302 kb on + strand, within Psyr_1062at 1203.302 kb on + strand, within Psyr_1062at 1203.302 kb on + strand, within Psyr_1062at 1203.302 kb on + strand, within Psyr_1062at 1203.302 kb on + strand, within Psyr_1062at 1203.303 kb on - strand, within Psyr_1062at 1203.303 kb on - strand, within Psyr_1062at 1203.303 kb on - strand, within Psyr_1062at 1203.303 kb on - strand, within Psyr_1062at 1203.303 kb on - strand, within Psyr_1062at 1203.335 kb on + strand, within Psyr_1062at 1203.335 kb on + strand, within Psyr_1062at 1203.335 kb on + strand, within Psyr_1062at 1203.336 kb on - strand, within Psyr_1062at 1203.336 kb on - strand, within Psyr_1062at 1203.338 kb on + strand, within Psyr_1062at 1203.339 kb on - strand, within Psyr_1062at 1203.431 kb on + strand, within Psyr_1062at 1203.431 kb on + strand, within Psyr_1062at 1203.431 kb on + strand, within Psyr_1062at 1203.431 kb on + strand, within Psyr_1062at 1203.431 kb on + strand, within Psyr_1062at 1203.432 kb on - strand, within Psyr_1062at 1203.432 kb on - strand, within Psyr_1062at 1203.432 kb on - strand, within Psyr_1062at 1203.432 kb on - strand, within Psyr_1062at 1203.455 kb on + strand, within Psyr_1062at 1203.456 kb on - strand, within Psyr_1062at 1203.559 kb on + strand, within Psyr_1062at 1203.559 kb on + strand, within Psyr_1062at 1203.560 kb on - strand, within Psyr_1062at 1203.614 kb on + strand, within Psyr_1062at 1203.614 kb on + strand, within Psyr_1062at 1203.614 kb on + strand, within Psyr_1062at 1203.615 kb on - strand, within Psyr_1062at 1203.615 kb on - strand, within Psyr_1062at 1203.692 kb on + strand, within Psyr_1062at 1203.692 kb on + strand, within Psyr_1062at 1203.693 kb on - strand, within Psyr_1062at 1203.693 kb on - strand, within Psyr_1062at 1203.950 kb on + strand, within Psyr_1062at 1203.950 kb on + strand, within Psyr_1062at 1203.951 kb on - strand, within Psyr_1062

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Sclareolide 10 mM
remove
1,200,975 - Psyr_1060 0.33 +1.7
1,200,975 - Psyr_1060 0.33 -0.0
1,200,975 - Psyr_1060 0.33 -0.9
1,200,977 + Psyr_1060 0.33 -0.2
1,200,977 + Psyr_1060 0.33 +0.3
1,200,978 - Psyr_1060 0.33 -2.0
1,201,037 + Psyr_1060 0.37 +2.1
1,201,037 + Psyr_1060 0.37 -1.2
1,201,189 + Psyr_1060 0.48 +0.1
1,201,190 - Psyr_1060 0.48 -1.3
1,201,320 - Psyr_1060 0.57 +0.4
1,201,385 + Psyr_1060 0.62 +1.4
1,201,385 + Psyr_1060 0.62 -0.5
1,201,385 + Psyr_1060 0.62 -0.2
1,201,385 + Psyr_1060 0.62 +2.7
1,201,385 + Psyr_1060 0.62 +0.4
1,201,385 + Psyr_1060 0.62 -0.5
1,201,385 + Psyr_1060 0.62 -1.5
1,201,385 + Psyr_1060 0.62 +0.8
1,201,385 + Psyr_1060 0.62 -0.3
1,201,385 + Psyr_1060 0.62 -0.3
1,201,385 + Psyr_1060 0.62 -0.9
1,201,385 + Psyr_1060 0.62 -0.6
1,201,386 - Psyr_1060 0.62 -1.1
1,201,386 - Psyr_1060 0.62 -1.7
1,201,508 + Psyr_1060 0.70 -1.1
1,201,508 + Psyr_1060 0.70 -1.6
1,201,509 - Psyr_1060 0.70 -0.3
1,201,509 - Psyr_1060 0.70 -2.2
1,201,674 - Psyr_1060 0.82 -1.9
1,201,726 - Psyr_1060 0.86 +2.0
1,201,755 - Psyr_1060 0.88 +2.8
1,202,335 + Psyr_1061 0.35 -1.8
1,202,336 - Psyr_1061 0.35 -0.5
1,202,474 + Psyr_1061 0.46 +0.3
1,202,475 - Psyr_1061 0.47 +3.1
1,202,545 + Psyr_1061 0.53 +1.3
1,202,555 - Psyr_1061 0.53 -0.4
1,202,555 - Psyr_1061 0.53 +1.0
1,202,982 + Psyr_1061 0.90 +1.0
1,202,982 + Psyr_1061 0.90 +0.4
1,202,982 + Psyr_1061 0.90 +0.1
1,203,072 + -0.7
1,203,072 + +0.8
1,203,073 - -2.5
1,203,073 - +1.0
1,203,095 + -1.5
1,203,095 + +1.6
1,203,095 + -0.6
1,203,095 + +4.2
1,203,096 - +0.6
1,203,250 + +0.7
1,203,251 - +1.3
1,203,302 + Psyr_1062 0.11 -0.3
1,203,302 + Psyr_1062 0.11 -0.0
1,203,302 + Psyr_1062 0.11 -2.5
1,203,302 + Psyr_1062 0.11 -0.5
1,203,302 + Psyr_1062 0.11 +0.2
1,203,302 + Psyr_1062 0.11 -1.2
1,203,303 - Psyr_1062 0.11 -3.6
1,203,303 - Psyr_1062 0.11 -0.8
1,203,303 - Psyr_1062 0.11 +0.2
1,203,303 - Psyr_1062 0.11 -0.0
1,203,303 - Psyr_1062 0.11 +1.4
1,203,335 + Psyr_1062 0.13 +1.2
1,203,335 + Psyr_1062 0.13 +0.8
1,203,335 + Psyr_1062 0.13 -0.2
1,203,336 - Psyr_1062 0.13 -2.0
1,203,336 - Psyr_1062 0.13 -0.0
1,203,338 + Psyr_1062 0.13 -2.0
1,203,339 - Psyr_1062 0.13 -0.4
1,203,431 + Psyr_1062 0.20 -0.4
1,203,431 + Psyr_1062 0.20 +0.1
1,203,431 + Psyr_1062 0.20 -1.3
1,203,431 + Psyr_1062 0.20 -0.9
1,203,431 + Psyr_1062 0.20 +0.8
1,203,432 - Psyr_1062 0.20 -0.6
1,203,432 - Psyr_1062 0.20 -0.0
1,203,432 - Psyr_1062 0.20 -0.8
1,203,432 - Psyr_1062 0.20 +1.6
1,203,455 + Psyr_1062 0.21 -0.3
1,203,456 - Psyr_1062 0.21 -1.6
1,203,559 + Psyr_1062 0.28 +0.2
1,203,559 + Psyr_1062 0.28 -0.9
1,203,560 - Psyr_1062 0.28 -0.0
1,203,614 + Psyr_1062 0.32 -0.0
1,203,614 + Psyr_1062 0.32 -0.5
1,203,614 + Psyr_1062 0.32 +0.7
1,203,615 - Psyr_1062 0.32 -0.3
1,203,615 - Psyr_1062 0.32 -1.2
1,203,692 + Psyr_1062 0.37 -1.4
1,203,692 + Psyr_1062 0.37 -1.2
1,203,693 - Psyr_1062 0.37 -2.6
1,203,693 - Psyr_1062 0.37 -0.2
1,203,950 + Psyr_1062 0.55 -0.7
1,203,950 + Psyr_1062 0.55 +0.9
1,203,951 - Psyr_1062 0.55 +0.7

Or see this region's nucleotide sequence