Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0957

Experiment: KB with Sclareolide 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0956 and Psyr_0957 overlap by 14 nucleotidesPsyr_0957 and Psyr_0958 overlap by 4 nucleotides Psyr_0956: Psyr_0956 - Cyclopropane-fatty-acyl-phospholipid synthase, at 1,090,142 to 1,091,410 _0956 Psyr_0957: Psyr_0957 - Protein of unknown function DUF1365, at 1,091,397 to 1,092,197 _0957 Psyr_0958: Psyr_0958 - amine oxidase, flavin-containing, at 1,092,194 to 1,093,441 _0958 Position (kb) 1091 1092 1093Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1090.461 kb on + strand, within Psyr_0956at 1090.578 kb on + strand, within Psyr_0956at 1090.578 kb on + strand, within Psyr_0956at 1090.579 kb on - strand, within Psyr_0956at 1090.579 kb on - strand, within Psyr_0956at 1090.579 kb on - strand, within Psyr_0956at 1090.579 kb on - strand, within Psyr_0956at 1090.785 kb on + strand, within Psyr_0956at 1090.786 kb on - strand, within Psyr_0956at 1090.789 kb on + strand, within Psyr_0956at 1090.929 kb on + strand, within Psyr_0956at 1090.929 kb on + strand, within Psyr_0956at 1090.929 kb on + strand, within Psyr_0956at 1090.929 kb on + strand, within Psyr_0956at 1090.929 kb on + strand, within Psyr_0956at 1090.929 kb on + strand, within Psyr_0956at 1090.929 kb on + strand, within Psyr_0956at 1090.929 kb on + strand, within Psyr_0956at 1090.930 kb on - strand, within Psyr_0956at 1090.930 kb on - strand, within Psyr_0956at 1090.930 kb on - strand, within Psyr_0956at 1090.930 kb on - strand, within Psyr_0956at 1090.930 kb on - strand, within Psyr_0956at 1090.930 kb on - strand, within Psyr_0956at 1090.930 kb on - strand, within Psyr_0956at 1090.930 kb on - strand, within Psyr_0956at 1090.930 kb on - strand, within Psyr_0956at 1090.981 kb on - strand, within Psyr_0956at 1090.981 kb on - strand, within Psyr_0956at 1091.369 kb on - strandat 1091.392 kb on + strandat 1091.392 kb on + strandat 1091.481 kb on + strand, within Psyr_0957at 1091.515 kb on + strand, within Psyr_0957at 1091.516 kb on - strand, within Psyr_0957at 1091.516 kb on - strand, within Psyr_0957at 1091.655 kb on + strand, within Psyr_0957at 1091.655 kb on + strand, within Psyr_0957at 1091.655 kb on + strand, within Psyr_0957at 1091.656 kb on - strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.786 kb on - strand, within Psyr_0957at 1091.786 kb on - strand, within Psyr_0957at 1091.786 kb on - strand, within Psyr_0957at 1091.786 kb on - strand, within Psyr_0957at 1091.786 kb on - strand, within Psyr_0957at 1091.786 kb on - strand, within Psyr_0957at 1091.786 kb on - strand, within Psyr_0957at 1091.786 kb on - strand, within Psyr_0957at 1092.016 kb on + strand, within Psyr_0957at 1092.017 kb on - strand, within Psyr_0957at 1092.110 kb on - strand, within Psyr_0957at 1092.181 kb on + strandat 1092.182 kb on - strandat 1092.182 kb on - strandat 1092.283 kb on - strandat 1092.283 kb on - strandat 1092.349 kb on - strand, within Psyr_0958at 1092.468 kb on + strand, within Psyr_0958at 1092.468 kb on + strand, within Psyr_0958at 1092.469 kb on - strand, within Psyr_0958at 1092.469 kb on - strand, within Psyr_0958at 1092.469 kb on - strand, within Psyr_0958at 1092.469 kb on - strand, within Psyr_0958at 1092.469 kb on - strand, within Psyr_0958at 1092.510 kb on + strand, within Psyr_0958at 1092.801 kb on + strand, within Psyr_0958at 1092.802 kb on - strand, within Psyr_0958at 1092.802 kb on - strand, within Psyr_0958at 1092.802 kb on - strand, within Psyr_0958at 1092.957 kb on + strand, within Psyr_0958at 1092.957 kb on + strand, within Psyr_0958at 1092.957 kb on + strand, within Psyr_0958at 1092.957 kb on + strand, within Psyr_0958at 1092.957 kb on + strand, within Psyr_0958at 1092.957 kb on + strand, within Psyr_0958at 1092.958 kb on - strand, within Psyr_0958at 1092.958 kb on - strand, within Psyr_0958at 1092.958 kb on - strand, within Psyr_0958at 1092.958 kb on - strand, within Psyr_0958at 1092.958 kb on - strand, within Psyr_0958at 1092.958 kb on - strand, within Psyr_0958at 1092.958 kb on - strand, within Psyr_0958at 1092.958 kb on - strand, within Psyr_0958at 1092.958 kb on - strand, within Psyr_0958at 1092.958 kb on - strand, within Psyr_0958at 1092.958 kb on - strand, within Psyr_0958at 1093.000 kb on - strand, within Psyr_0958at 1093.155 kb on + strand, within Psyr_0958at 1093.155 kb on + strand, within Psyr_0958at 1093.155 kb on + strand, within Psyr_0958at 1093.155 kb on + strand, within Psyr_0958at 1093.155 kb on + strand, within Psyr_0958at 1093.155 kb on + strand, within Psyr_0958at 1093.156 kb on - strand, within Psyr_0958at 1093.156 kb on - strand, within Psyr_0958at 1093.156 kb on - strand, within Psyr_0958

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Sclareolide 10 mM
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1,090,461 + Psyr_0956 0.25 -1.4
1,090,578 + Psyr_0956 0.34 +1.1
1,090,578 + Psyr_0956 0.34 -2.0
1,090,579 - Psyr_0956 0.34 -0.2
1,090,579 - Psyr_0956 0.34 -0.2
1,090,579 - Psyr_0956 0.34 -0.3
1,090,579 - Psyr_0956 0.34 +0.1
1,090,785 + Psyr_0956 0.51 +0.5
1,090,786 - Psyr_0956 0.51 +0.5
1,090,789 + Psyr_0956 0.51 -1.1
1,090,929 + Psyr_0956 0.62 +1.1
1,090,929 + Psyr_0956 0.62 -2.0
1,090,929 + Psyr_0956 0.62 +1.1
1,090,929 + Psyr_0956 0.62 +1.6
1,090,929 + Psyr_0956 0.62 +1.2
1,090,929 + Psyr_0956 0.62 -0.3
1,090,929 + Psyr_0956 0.62 -0.5
1,090,929 + Psyr_0956 0.62 -0.3
1,090,930 - Psyr_0956 0.62 +0.3
1,090,930 - Psyr_0956 0.62 +0.3
1,090,930 - Psyr_0956 0.62 +1.7
1,090,930 - Psyr_0956 0.62 -0.2
1,090,930 - Psyr_0956 0.62 -0.3
1,090,930 - Psyr_0956 0.62 +0.6
1,090,930 - Psyr_0956 0.62 -1.0
1,090,930 - Psyr_0956 0.62 -2.1
1,090,930 - Psyr_0956 0.62 -0.6
1,090,981 - Psyr_0956 0.66 -0.6
1,090,981 - Psyr_0956 0.66 -0.2
1,091,369 - -0.0
1,091,392 + +0.7
1,091,392 + +1.4
1,091,481 + Psyr_0957 0.10 -0.7
1,091,515 + Psyr_0957 0.15 +0.1
1,091,516 - Psyr_0957 0.15 -0.0
1,091,516 - Psyr_0957 0.15 -2.4
1,091,655 + Psyr_0957 0.32 -0.7
1,091,655 + Psyr_0957 0.32 -0.5
1,091,655 + Psyr_0957 0.32 +1.1
1,091,656 - Psyr_0957 0.32 +0.1
1,091,785 + Psyr_0957 0.48 +0.7
1,091,785 + Psyr_0957 0.48 +1.1
1,091,785 + Psyr_0957 0.48 -0.4
1,091,785 + Psyr_0957 0.48 +0.1
1,091,785 + Psyr_0957 0.48 -1.0
1,091,785 + Psyr_0957 0.48 +0.1
1,091,785 + Psyr_0957 0.48 +1.5
1,091,785 + Psyr_0957 0.48 +0.6
1,091,785 + Psyr_0957 0.48 -0.9
1,091,785 + Psyr_0957 0.48 -0.5
1,091,785 + Psyr_0957 0.48 -2.8
1,091,786 - Psyr_0957 0.49 +1.1
1,091,786 - Psyr_0957 0.49 -0.3
1,091,786 - Psyr_0957 0.49 -1.1
1,091,786 - Psyr_0957 0.49 +1.6
1,091,786 - Psyr_0957 0.49 -0.8
1,091,786 - Psyr_0957 0.49 -1.3
1,091,786 - Psyr_0957 0.49 -1.9
1,091,786 - Psyr_0957 0.49 -0.6
1,092,016 + Psyr_0957 0.77 +1.1
1,092,017 - Psyr_0957 0.77 +3.9
1,092,110 - Psyr_0957 0.89 +3.9
1,092,181 + -1.1
1,092,182 - +3.6
1,092,182 - -0.5
1,092,283 - +0.4
1,092,283 - -0.1
1,092,349 - Psyr_0958 0.12 -0.5
1,092,468 + Psyr_0958 0.22 -0.9
1,092,468 + Psyr_0958 0.22 +0.2
1,092,469 - Psyr_0958 0.22 +0.7
1,092,469 - Psyr_0958 0.22 -0.7
1,092,469 - Psyr_0958 0.22 +1.2
1,092,469 - Psyr_0958 0.22 -0.6
1,092,469 - Psyr_0958 0.22 -1.1
1,092,510 + Psyr_0958 0.25 -0.1
1,092,801 + Psyr_0958 0.49 -1.0
1,092,802 - Psyr_0958 0.49 -1.3
1,092,802 - Psyr_0958 0.49 +1.3
1,092,802 - Psyr_0958 0.49 +1.0
1,092,957 + Psyr_0958 0.61 +0.1
1,092,957 + Psyr_0958 0.61 +0.7
1,092,957 + Psyr_0958 0.61 +2.1
1,092,957 + Psyr_0958 0.61 -0.2
1,092,957 + Psyr_0958 0.61 -2.4
1,092,957 + Psyr_0958 0.61 +2.5
1,092,958 - Psyr_0958 0.61 +0.3
1,092,958 - Psyr_0958 0.61 +0.2
1,092,958 - Psyr_0958 0.61 -2.4
1,092,958 - Psyr_0958 0.61 +0.1
1,092,958 - Psyr_0958 0.61 +2.1
1,092,958 - Psyr_0958 0.61 +1.1
1,092,958 - Psyr_0958 0.61 +3.4
1,092,958 - Psyr_0958 0.61 -0.4
1,092,958 - Psyr_0958 0.61 +2.7
1,092,958 - Psyr_0958 0.61 +1.4
1,092,958 - Psyr_0958 0.61 -0.8
1,093,000 - Psyr_0958 0.65 -0.3
1,093,155 + Psyr_0958 0.77 +1.1
1,093,155 + Psyr_0958 0.77 +1.6
1,093,155 + Psyr_0958 0.77 -1.5
1,093,155 + Psyr_0958 0.77 +0.5
1,093,155 + Psyr_0958 0.77 -0.4
1,093,155 + Psyr_0958 0.77 +0.4
1,093,156 - Psyr_0958 0.77 +0.1
1,093,156 - Psyr_0958 0.77 +0.7
1,093,156 - Psyr_0958 0.77 -0.7

Or see this region's nucleotide sequence