Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0208

Experiment: KB with Sclareolide 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0206 and Psyr_0207 are separated by 52 nucleotidesPsyr_0207 and Psyr_0208 are separated by 54 nucleotidesPsyr_0208 and Psyr_0209 are separated by 24 nucleotides Psyr_0206: Psyr_0206 - conserved hypothetical protein, at 220,906 to 221,754 _0206 Psyr_0207: Psyr_0207 - lipoprotein, putative, at 221,807 to 222,544 _0207 Psyr_0208: Psyr_0208 - endoribonuclease L-PSP, at 222,599 to 222,979 _0208 Psyr_0209: Psyr_0209 - RelA/SpoT protein, at 223,004 to 225,127 _0209 Position (kb) 222 223Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 221.611 kb on + strand, within Psyr_0206at 221.612 kb on - strand, within Psyr_0206at 221.676 kb on + strandat 221.713 kb on + strandat 221.752 kb on + strandat 221.809 kb on - strandat 221.891 kb on + strand, within Psyr_0207at 221.892 kb on - strand, within Psyr_0207at 221.892 kb on - strand, within Psyr_0207at 222.114 kb on + strand, within Psyr_0207at 222.114 kb on + strand, within Psyr_0207at 222.114 kb on + strand, within Psyr_0207at 222.114 kb on + strand, within Psyr_0207at 222.114 kb on + strand, within Psyr_0207at 222.114 kb on + strand, within Psyr_0207at 222.115 kb on - strand, within Psyr_0207at 222.115 kb on - strand, within Psyr_0207at 222.124 kb on - strand, within Psyr_0207at 222.124 kb on - strand, within Psyr_0207at 222.342 kb on + strand, within Psyr_0207at 222.342 kb on + strand, within Psyr_0207at 222.342 kb on + strand, within Psyr_0207at 222.342 kb on + strand, within Psyr_0207at 222.343 kb on - strand, within Psyr_0207at 222.600 kb on + strandat 222.696 kb on + strand, within Psyr_0208at 222.696 kb on + strand, within Psyr_0208at 222.696 kb on + strand, within Psyr_0208at 222.696 kb on + strand, within Psyr_0208at 222.696 kb on + strand, within Psyr_0208at 222.697 kb on - strand, within Psyr_0208at 222.697 kb on - strand, within Psyr_0208at 222.894 kb on + strand, within Psyr_0208at 222.894 kb on + strand, within Psyr_0208at 222.894 kb on + strand, within Psyr_0208at 222.894 kb on + strand, within Psyr_0208at 222.895 kb on - strand, within Psyr_0208at 222.895 kb on - strand, within Psyr_0208at 222.895 kb on - strand, within Psyr_0208at 222.895 kb on - strand, within Psyr_0208at 222.895 kb on - strand, within Psyr_0208at 222.895 kb on - strand, within Psyr_0208at 222.895 kb on - strand, within Psyr_0208at 222.895 kb on - strand, within Psyr_0208at 222.895 kb on - strand, within Psyr_0208at 222.895 kb on - strand, within Psyr_0208

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Sclareolide 10 mM
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221,611 + Psyr_0206 0.83 -0.6
221,612 - Psyr_0206 0.83 -0.7
221,676 + -0.0
221,713 + +2.1
221,752 + -1.6
221,809 - +0.1
221,891 + Psyr_0207 0.11 -0.7
221,892 - Psyr_0207 0.12 +0.5
221,892 - Psyr_0207 0.12 -0.7
222,114 + Psyr_0207 0.42 +2.2
222,114 + Psyr_0207 0.42 -2.6
222,114 + Psyr_0207 0.42 +0.1
222,114 + Psyr_0207 0.42 +0.4
222,114 + Psyr_0207 0.42 -0.7
222,114 + Psyr_0207 0.42 -0.2
222,115 - Psyr_0207 0.42 -0.2
222,115 - Psyr_0207 0.42 +0.8
222,124 - Psyr_0207 0.43 -1.5
222,124 - Psyr_0207 0.43 +0.3
222,342 + Psyr_0207 0.72 +0.3
222,342 + Psyr_0207 0.72 -1.8
222,342 + Psyr_0207 0.72 -1.3
222,342 + Psyr_0207 0.72 -1.8
222,343 - Psyr_0207 0.73 +0.1
222,600 + -0.7
222,696 + Psyr_0208 0.25 -2.1
222,696 + Psyr_0208 0.25 -3.8
222,696 + Psyr_0208 0.25 -1.8
222,696 + Psyr_0208 0.25 -0.3
222,696 + Psyr_0208 0.25 -0.8
222,697 - Psyr_0208 0.26 -1.9
222,697 - Psyr_0208 0.26 +0.2
222,894 + Psyr_0208 0.77 +1.2
222,894 + Psyr_0208 0.77 -3.1
222,894 + Psyr_0208 0.77 -0.4
222,894 + Psyr_0208 0.77 -1.6
222,895 - Psyr_0208 0.78 +0.8
222,895 - Psyr_0208 0.78 -1.8
222,895 - Psyr_0208 0.78 -3.8
222,895 - Psyr_0208 0.78 -0.2
222,895 - Psyr_0208 0.78 -1.1
222,895 - Psyr_0208 0.78 -0.2
222,895 - Psyr_0208 0.78 +0.5
222,895 - Psyr_0208 0.78 +2.8
222,895 - Psyr_0208 0.78 -1.1
222,895 - Psyr_0208 0.78 -0.5

Or see this region's nucleotide sequence