Strain Fitness in Pseudomonas putida KT2440 around PP_4695

Experiment: L-Lysine 10 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lysine 10 mM (C)
5,332,611	+		PP_4694	0.38	-0.2
5,332,611	+		PP_4694	0.38	+0.2
5,332,612	-		PP_4694	0.38	+0.3
5,332,612	-		PP_4694	0.38	+0.2
5,332,623	+		PP_4694	0.40	-0.3
5,332,623	+		PP_4694	0.40	-2.0
5,332,623	+		PP_4694	0.40	-0.8
5,332,624	-		PP_4694	0.40	-0.7
5,332,624	-		PP_4694	0.40	-1.5
5,332,624	-		PP_4694	0.40	+0.1
5,332,698	+		PP_4694	0.48	+0.6
5,332,698	+		PP_4694	0.48	+0.3
5,332,728	+		PP_4694	0.51	-1.4
5,332,728	+		PP_4694	0.51	-1.0
5,332,788	+		PP_4694	0.58	+0.0
5,332,789	-		PP_4694	0.58	+0.1
5,332,789	-		PP_4694	0.58	+0.8
5,332,789	-		PP_4694	0.58	+0.5
5,332,789	-		PP_4694	0.58	-0.1
5,332,795	-		PP_4694	0.59	-0.5
5,332,795	-		PP_4694	0.59	-0.6
5,332,795	-		PP_4694	0.59	-0.1
5,332,887	+		PP_4694	0.69	-0.8
5,332,888	-		PP_4694	0.69	-1.6
5,332,888	-		PP_4694	0.69	+0.3
5,332,931	+		PP_4694	0.74	-0.1
5,332,931	+		PP_4694	0.74	+0.8
5,332,931	+		PP_4694	0.74	-1.3
5,332,931	+		PP_4694	0.74	-0.7
5,332,932	-		PP_4694	0.74	+0.2
5,332,932	-		PP_4694	0.74	-0.7
5,333,174	+				-0.9
5,333,344	-				-0.1
5,333,373	+				-1.6
5,333,373	+				-0.2
5,333,374	-				+1.0
5,333,374	-				-0.4
5,333,374	-				-2.5
5,333,414	+				+0.3
5,333,414	+				+0.6
5,333,414	+				+1.4
5,333,414	+				+1.1
5,333,414	+				-0.1
5,333,414	+				+1.2
5,333,414	+				+1.0
5,333,414	+				+0.5
5,333,414	+				+0.9
5,333,414	+				+0.6
5,333,414	+				+2.0
5,333,415	-				+0.4
5,333,415	-				-2.2
5,333,415	-				-1.9
5,333,415	-				-0.5
5,333,421	-				-0.2
5,333,453	+		PP_5704	0.24	+1.4
5,333,453	+		PP_5704	0.24	+0.6
5,333,454	-		PP_5704	0.24	-1.1
5,333,454	-		PP_5704	0.24	+0.1
5,333,454	-		PP_5704	0.24	+0.1
5,333,454	-		PP_5704	0.24	+0.3
5,333,516	+		PP_5704	0.59	+2.9
5,333,569	-		PP_5704	0.89	-0.2
5,333,585	+				-0.5
5,333,585	+				-0.2
5,333,620	-				-3.3
5,333,696	+				-0.6
5,333,696	+				-0.0
5,333,696	+				-3.0
5,333,696	+				-2.3
5,333,697	-				-2.3
5,333,697	-				-0.7
5,333,697	-				-2.5
5,333,700	+				-2.2
5,333,700	+				-1.9
5,333,700	+				-3.9
5,333,700	+				-1.5
5,333,701	-				-2.0
5,333,701	-				-0.9
5,333,701	-				-3.1
5,333,701	-				-2.7
5,333,701	-				-2.5
5,333,701	-				-2.2
5,333,701	-				-2.2
5,333,721	+				-0.6
5,333,722	-				-0.0
5,333,722	-				-2.0
5,333,742	+				+1.8
5,333,742	+				-3.9
5,333,742	+				-1.7
5,333,742	+				-1.2
5,333,742	+				+0.2
5,333,743	-				-2.5
5,333,743	-				-3.1
5,333,743	-				-2.4
5,333,743	-				-2.8
5,333,743	-				-2.2
5,333,763	+				-3.6
5,333,763	+				-3.6
5,333,763	+				-2.8
5,333,764	-				-0.7
5,333,764	-				-1.8
5,333,764	-				-2.5
5,333,769	+				-2.8
5,333,865	+				-3.4
5,333,865	+				-3.3
5,333,866	-				-1.5
5,333,866	-				-2.8
5,333,866	-				-2.2
5,333,913	-		PP_4695	0.11	-1.6
5,334,005	+		PP_4695	0.15	-2.2
5,334,186	+		PP_4695	0.21	-1.3
5,334,186	+		PP_4695	0.21	-3.0
5,334,186	+		PP_4695	0.21	-3.1
5,334,187	-		PP_4695	0.21	-0.3
5,334,187	-		PP_4695	0.21	-3.4
5,334,187	-		PP_4695	0.21	-2.8
5,334,195	+		PP_4695	0.21	-3.6
5,334,195	+		PP_4695	0.21	-2.6
5,334,196	-		PP_4695	0.21	-0.7
5,334,196	-		PP_4695	0.21	-1.8
5,334,196	-		PP_4695	0.21	-3.7
5,334,196	-		PP_4695	0.21	-1.6
5,334,196	-		PP_4695	0.21	-2.3
5,334,202	+		PP_4695	0.21	-0.0
5,334,345	+		PP_4695	0.26	-3.0
5,334,345	+		PP_4695	0.26	-0.9
5,334,345	+		PP_4695	0.26	-3.8
5,334,345	+		PP_4695	0.26	-4.0
5,334,345	+		PP_4695	0.26	-2.4
5,334,346	-		PP_4695	0.26	-3.3
5,334,346	-		PP_4695	0.26	-1.5
5,334,346	-		PP_4695	0.26	-2.6
5,334,346	-		PP_4695	0.26	-1.6
5,334,346	-		PP_4695	0.26	-2.7
5,334,346	-		PP_4695	0.26	-0.5
5,334,492	+		PP_4695	0.31	-1.7
5,334,550	-		PP_4695	0.33	+0.4
5,334,669	+		PP_4695	0.37	-3.9
5,334,669	+		PP_4695	0.37	-1.6
5,334,669	+		PP_4695	0.37	-0.7
5,334,669	+		PP_4695	0.37	-4.0
5,334,670	-		PP_4695	0.37	-1.4
5,334,670	-		PP_4695	0.37	-2.0
5,334,735	+		PP_4695	0.39	-1.9
5,334,736	-		PP_4695	0.39	-2.9
5,334,750	+		PP_4695	0.40	-2.0
5,334,751	-		PP_4695	0.40	-2.6
5,334,826	+		PP_4695	0.42	-3.9
5,334,827	-		PP_4695	0.42	-1.5
5,334,831	+		PP_4695	0.42	-0.9
5,334,832	-		PP_4695	0.42	-0.8
5,334,939	+		PP_4695	0.46	-1.7
5,334,939	+		PP_4695	0.46	-1.3
5,334,939	+		PP_4695	0.46	-0.4
5,334,940	-		PP_4695	0.46	-1.8
5,334,963	+		PP_4695	0.47	-2.0
5,334,963	+		PP_4695	0.47	-3.5
5,334,963	+		PP_4695	0.47	-2.9
5,334,963	+		PP_4695	0.47	+0.3
5,334,963	+		PP_4695	0.47	-2.8
5,334,963	+		PP_4695	0.47	-1.6
5,334,963	+		PP_4695	0.47	-2.8
5,334,963	+		PP_4695	0.47	-0.0
5,334,964	-		PP_4695	0.47	-2.2
5,334,964	-		PP_4695	0.47	-1.8
5,334,964	-		PP_4695	0.47	+0.3
5,334,964	-		PP_4695	0.47	-1.5
5,334,964	-		PP_4695	0.47	-1.3
5,335,227	+		PP_4695	0.56	-3.0
5,335,350	+		PP_4695	0.60	-4.4
5,335,351	-		PP_4695	0.60	-3.4
5,335,371	+		PP_4695	0.60	-1.8
5,335,372	-		PP_4695	0.61	-2.6
5,335,372	-		PP_4695	0.61	-2.6
5,336,125	+		PP_4695	0.86	-1.9
5,336,125	+		PP_4695	0.86	-2.0
5,336,125	+		PP_4695	0.86	-2.2
5,336,400	+				-0.0
5,336,400	+				-2.9
5,336,401	-				-1.2
5,336,401	-				-1.4
5,336,421	+				-2.4
5,336,422	-				-0.0
5,336,422	-				-0.3
5,336,782	+		PP_4696	0.16	-2.4
5,336,782	+		PP_4696	0.16	-0.7
5,336,833	+		PP_4696	0.20	-2.0
5,336,834	-		PP_4696	0.20	-2.4
5,336,884	-		PP_4696	0.23	-1.8
5,336,955	+		PP_4696	0.28	-0.5
5,336,955	+		PP_4696	0.28	-0.7
5,336,956	-		PP_4696	0.28	+0.4
5,336,956	-		PP_4696	0.28	+1.3
5,336,956	-		PP_4696	0.28	-2.4
5,337,037	+		PP_4696	0.34	-2.9
5,337,037	+		PP_4696	0.34	-0.9
5,337,037	+		PP_4696	0.34	-2.2
5,337,038	-		PP_4696	0.34	-2.8
5,337,038	-		PP_4696	0.34	-1.4
5,337,038	-		PP_4696	0.34	-2.3
5,337,038	-		PP_4696	0.34	-1.3
5,337,368	+		PP_4696	0.57	+1.3