Experiment: L-Lysine 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0279 and PP_0280 are separated by 128 nucleotides PP_0280 and PP_0281 overlap by 1 nucleotides PP_0281 and PP_0282 are separated by 54 nucleotides
PP_0279: PP_0279 - conserved protein of unknown function, at 336,545 to 337,750
_0279
PP_0280: PP_0280 - Amino acid ABC transporter, permease protein, at 337,879 to 338,568
_0280
PP_0281: PP_0281 - Amino acid ABC transporter, permease protein, at 338,568 to 339,260
_0281
PP_0282: PP_0282 - L-arginine ABC transporter - periplasmic binding subunit, at 339,315 to 340,067
_0282
Position (kb) 337
338
339 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 337.047 kb on + strand, within PP_0279 at 337.071 kb on + strand, within PP_0279 at 337.072 kb on - strand, within PP_0279 at 337.072 kb on - strand, within PP_0279 at 337.133 kb on + strand, within PP_0279 at 337.133 kb on + strand, within PP_0279 at 337.134 kb on - strand, within PP_0279 at 337.134 kb on - strand, within PP_0279 at 337.175 kb on - strand, within PP_0279 at 337.290 kb on + strand, within PP_0279 at 337.290 kb on + strand, within PP_0279 at 337.291 kb on - strand, within PP_0279 at 337.291 kb on - strand, within PP_0279 at 337.721 kb on + strand at 337.721 kb on + strand at 337.721 kb on + strand at 337.721 kb on + strand at 337.721 kb on + strand at 337.721 kb on + strand at 337.721 kb on + strand at 337.721 kb on + strand at 337.722 kb on - strand at 337.722 kb on - strand at 337.722 kb on - strand at 337.722 kb on - strand at 337.808 kb on + strand at 337.809 kb on - strand at 337.809 kb on - strand at 337.810 kb on + strand at 337.811 kb on - strand at 337.811 kb on - strand at 337.834 kb on + strand at 337.835 kb on - strand at 337.961 kb on + strand, within PP_0280 at 337.961 kb on + strand, within PP_0280 at 337.962 kb on - strand, within PP_0280 at 337.962 kb on - strand, within PP_0280 at 338.000 kb on + strand, within PP_0280 at 338.001 kb on - strand, within PP_0280 at 338.020 kb on - strand, within PP_0280 at 338.056 kb on - strand, within PP_0280 at 338.144 kb on + strand, within PP_0280 at 338.144 kb on + strand, within PP_0280 at 338.202 kb on + strand, within PP_0280 at 338.202 kb on + strand, within PP_0280 at 338.243 kb on + strand, within PP_0280 at 338.243 kb on + strand, within PP_0280 at 338.244 kb on - strand, within PP_0280 at 338.244 kb on - strand, within PP_0280 at 338.300 kb on + strand, within PP_0280 at 338.351 kb on + strand, within PP_0280 at 338.402 kb on + strand, within PP_0280 at 338.402 kb on + strand, within PP_0280 at 338.426 kb on + strand, within PP_0280 at 338.569 kb on + strand at 338.570 kb on - strand at 338.570 kb on - strand at 338.570 kb on - strand at 338.619 kb on - strand at 338.650 kb on + strand, within PP_0281 at 338.651 kb on - strand, within PP_0281 at 338.651 kb on - strand, within PP_0281 at 338.651 kb on - strand, within PP_0281 at 338.651 kb on - strand, within PP_0281 at 338.671 kb on + strand, within PP_0281 at 338.671 kb on + strand, within PP_0281 at 338.672 kb on - strand, within PP_0281 at 338.672 kb on - strand, within PP_0281 at 338.672 kb on - strand, within PP_0281 at 338.906 kb on + strand, within PP_0281 at 339.046 kb on + strand, within PP_0281 at 339.046 kb on + strand, within PP_0281 at 339.047 kb on - strand, within PP_0281 at 339.047 kb on - strand, within PP_0281 at 339.047 kb on - strand, within PP_0281 at 339.050 kb on + strand, within PP_0281 at 339.050 kb on + strand, within PP_0281 at 339.050 kb on + strand, within PP_0281 at 339.051 kb on - strand, within PP_0281 at 339.051 kb on - strand, within PP_0281 at 339.051 kb on - strand, within PP_0281 at 339.051 kb on - strand, within PP_0281 at 339.051 kb on - strand, within PP_0281 at 339.051 kb on - strand, within PP_0281 at 339.051 kb on - strand, within PP_0281 at 339.058 kb on - strand, within PP_0281 at 339.058 kb on - strand, within PP_0281 at 339.097 kb on + strand, within PP_0281 at 339.255 kb on - strand at 339.337 kb on + strand at 339.337 kb on + strand at 339.337 kb on + strand at 339.337 kb on + strand at 339.338 kb on - strand at 339.338 kb on - strand at 339.358 kb on + strand at 339.358 kb on + strand at 339.358 kb on + strand at 339.358 kb on + strand at 339.359 kb on - strand at 339.362 kb on + strand at 339.363 kb on - strand at 339.514 kb on + strand, within PP_0282 at 339.514 kb on + strand, within PP_0282 at 339.515 kb on - strand, within PP_0282 at 339.523 kb on + strand, within PP_0282 at 339.523 kb on + strand, within PP_0282 at 339.523 kb on + strand, within PP_0282 at 339.524 kb on - strand, within PP_0282 at 339.524 kb on - strand, within PP_0282 at 339.524 kb on - strand, within PP_0282 at 339.524 kb on - strand, within PP_0282 at 339.524 kb on - strand, within PP_0282 at 339.548 kb on + strand, within PP_0282
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine 10 mM (C) remove 337,047 + PP_0279 0.42 -1.2 337,071 + PP_0279 0.44 +0.2 337,072 - PP_0279 0.44 -1.0 337,072 - PP_0279 0.44 -1.7 337,133 + PP_0279 0.49 +1.2 337,133 + PP_0279 0.49 -0.9 337,134 - PP_0279 0.49 -0.4 337,134 - PP_0279 0.49 +1.2 337,175 - PP_0279 0.52 +1.3 337,290 + PP_0279 0.62 -0.6 337,290 + PP_0279 0.62 +0.3 337,291 - PP_0279 0.62 -0.0 337,291 - PP_0279 0.62 -0.1 337,721 + +0.8 337,721 + -0.7 337,721 + +1.1 337,721 + +0.3 337,721 + +0.3 337,721 + +0.6 337,721 + -0.1 337,721 + -0.5 337,722 - -0.3 337,722 - +0.0 337,722 - +0.2 337,722 - -1.2 337,808 + +1.4 337,809 - +1.2 337,809 - +1.3 337,810 + -0.0 337,811 - +0.6 337,811 - +1.0 337,834 + +0.3 337,835 - -0.1 337,961 + PP_0280 0.12 +1.1 337,961 + PP_0280 0.12 -1.6 337,962 - PP_0280 0.12 +1.8 337,962 - PP_0280 0.12 +3.2 338,000 + PP_0280 0.18 -0.2 338,001 - PP_0280 0.18 +0.6 338,020 - PP_0280 0.20 +0.9 338,056 - PP_0280 0.26 +2.1 338,144 + PP_0280 0.38 +0.8 338,144 + PP_0280 0.38 +0.3 338,202 + PP_0280 0.47 +0.8 338,202 + PP_0280 0.47 +1.5 338,243 + PP_0280 0.53 +1.4 338,243 + PP_0280 0.53 -2.7 338,244 - PP_0280 0.53 -0.4 338,244 - PP_0280 0.53 +1.2 338,300 + PP_0280 0.61 +1.4 338,351 + PP_0280 0.68 -0.1 338,402 + PP_0280 0.76 +1.6 338,402 + PP_0280 0.76 -1.4 338,426 + PP_0280 0.79 -0.6 338,569 + +0.9 338,570 - +1.1 338,570 - +0.9 338,570 - -0.5 338,619 - +1.0 338,650 + PP_0281 0.12 +3.5 338,651 - PP_0281 0.12 -1.4 338,651 - PP_0281 0.12 -0.3 338,651 - PP_0281 0.12 -2.5 338,651 - PP_0281 0.12 +0.6 338,671 + PP_0281 0.15 +0.3 338,671 + PP_0281 0.15 +0.7 338,672 - PP_0281 0.15 +1.1 338,672 - PP_0281 0.15 +0.2 338,672 - PP_0281 0.15 +1.1 338,906 + PP_0281 0.49 +0.8 339,046 + PP_0281 0.69 +0.7 339,046 + PP_0281 0.69 +0.2 339,047 - PP_0281 0.69 +0.4 339,047 - PP_0281 0.69 -0.2 339,047 - PP_0281 0.69 +3.1 339,050 + PP_0281 0.70 +1.2 339,050 + PP_0281 0.70 +1.9 339,050 + PP_0281 0.70 +1.8 339,051 - PP_0281 0.70 -1.0 339,051 - PP_0281 0.70 +1.2 339,051 - PP_0281 0.70 +1.0 339,051 - PP_0281 0.70 +0.8 339,051 - PP_0281 0.70 +0.6 339,051 - PP_0281 0.70 +1.6 339,051 - PP_0281 0.70 +0.4 339,058 - PP_0281 0.71 +0.5 339,058 - PP_0281 0.71 +1.2 339,097 + PP_0281 0.76 +1.1 339,255 - -0.2 339,337 + +2.4 339,337 + +0.6 339,337 + +1.4 339,337 + +2.3 339,338 - +1.2 339,338 - -0.6 339,358 + +1.5 339,358 + +0.5 339,358 + +0.5 339,358 + +0.8 339,359 - +0.1 339,362 + +1.4 339,363 - +1.8 339,514 + PP_0282 0.26 +1.5 339,514 + PP_0282 0.26 +0.0 339,515 - PP_0282 0.27 +0.4 339,523 + PP_0282 0.28 +0.3 339,523 + PP_0282 0.28 -0.4 339,523 + PP_0282 0.28 +0.6 339,524 - PP_0282 0.28 -1.0 339,524 - PP_0282 0.28 -1.3 339,524 - PP_0282 0.28 +0.3 339,524 - PP_0282 0.28 +2.0 339,524 - PP_0282 0.28 +1.5 339,548 + PP_0282 0.31 +1.1
Or see this region's nucleotide sequence