Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_5115

Experiment: LB control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_5114 and PfGW456L13_5115 are separated by 150 nucleotidesPfGW456L13_5115 and PfGW456L13_5116 overlap by 4 nucleotides PfGW456L13_5114 - L-lactate permease, at 5,704,325 to 5,706,019 _5114 PfGW456L13_5115 - Predicted L-lactate dehydrogenase, Fe-S oxidoreductase subunit YkgE, at 5,706,170 to 5,706,994 _5115 PfGW456L13_5116 - Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF, at 5,706,991 to 5,708,448 _5116 Position (kb) 5706 5707Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5705.187 kb on + strand, within PfGW456L13_5114at 5705.187 kb on + strand, within PfGW456L13_5114at 5705.240 kb on + strand, within PfGW456L13_5114at 5705.241 kb on - strand, within PfGW456L13_5114at 5705.292 kb on + strand, within PfGW456L13_5114at 5705.293 kb on - strand, within PfGW456L13_5114at 5705.354 kb on + strand, within PfGW456L13_5114at 5705.354 kb on + strand, within PfGW456L13_5114at 5705.354 kb on + strand, within PfGW456L13_5114at 5705.354 kb on + strand, within PfGW456L13_5114at 5705.354 kb on + strand, within PfGW456L13_5114at 5705.354 kb on + strand, within PfGW456L13_5114at 5705.354 kb on + strand, within PfGW456L13_5114at 5705.354 kb on + strand, within PfGW456L13_5114at 5705.354 kb on + strand, within PfGW456L13_5114at 5705.355 kb on - strand, within PfGW456L13_5114at 5705.355 kb on - strand, within PfGW456L13_5114at 5705.355 kb on - strand, within PfGW456L13_5114at 5705.355 kb on - strand, within PfGW456L13_5114at 5705.355 kb on - strand, within PfGW456L13_5114at 5705.364 kb on + strand, within PfGW456L13_5114at 5705.364 kb on + strand, within PfGW456L13_5114at 5705.365 kb on - strand, within PfGW456L13_5114at 5705.365 kb on - strand, within PfGW456L13_5114at 5705.421 kb on + strand, within PfGW456L13_5114at 5705.422 kb on - strand, within PfGW456L13_5114at 5705.422 kb on - strand, within PfGW456L13_5114at 5705.422 kb on - strand, within PfGW456L13_5114at 5705.422 kb on - strand, within PfGW456L13_5114at 5705.567 kb on + strand, within PfGW456L13_5114at 5705.567 kb on + strand, within PfGW456L13_5114at 5705.567 kb on + strand, within PfGW456L13_5114at 5705.567 kb on + strand, within PfGW456L13_5114at 5705.567 kb on + strand, within PfGW456L13_5114at 5705.567 kb on + strand, within PfGW456L13_5114at 5705.568 kb on - strand, within PfGW456L13_5114at 5705.568 kb on - strand, within PfGW456L13_5114at 5705.630 kb on + strand, within PfGW456L13_5114at 5705.630 kb on + strand, within PfGW456L13_5114at 5705.630 kb on + strand, within PfGW456L13_5114at 5705.631 kb on - strand, within PfGW456L13_5114at 5705.631 kb on - strand, within PfGW456L13_5114at 5705.721 kb on + strand, within PfGW456L13_5114at 5705.722 kb on - strand, within PfGW456L13_5114at 5705.722 kb on - strand, within PfGW456L13_5114at 5705.722 kb on - strand, within PfGW456L13_5114at 5705.722 kb on - strand, within PfGW456L13_5114at 5705.946 kb on + strandat 5705.946 kb on + strandat 5705.947 kb on - strandat 5705.947 kb on - strandat 5705.990 kb on + strandat 5705.990 kb on + strandat 5705.990 kb on + strandat 5706.018 kb on - strandat 5706.018 kb on - strandat 5706.018 kb on - strandat 5706.024 kb on + strandat 5706.024 kb on + strandat 5706.025 kb on - strandat 5706.092 kb on + strandat 5706.092 kb on + strandat 5706.093 kb on - strandat 5706.117 kb on + strandat 5706.117 kb on + strandat 5706.117 kb on + strandat 5706.118 kb on - strandat 5706.118 kb on - strandat 5706.118 kb on - strandat 5706.118 kb on - strandat 5706.119 kb on + strandat 5706.120 kb on - strandat 5706.120 kb on - strandat 5706.120 kb on - strandat 5706.120 kb on - strandat 5706.186 kb on - strandat 5706.269 kb on + strand, within PfGW456L13_5115at 5706.270 kb on - strand, within PfGW456L13_5115at 5706.270 kb on - strand, within PfGW456L13_5115at 5706.270 kb on - strand, within PfGW456L13_5115at 5706.399 kb on - strand, within PfGW456L13_5115at 5706.399 kb on - strand, within PfGW456L13_5115at 5706.399 kb on - strand, within PfGW456L13_5115at 5706.399 kb on - strand, within PfGW456L13_5115at 5706.411 kb on - strand, within PfGW456L13_5115at 5706.518 kb on + strand, within PfGW456L13_5115at 5706.518 kb on + strand, within PfGW456L13_5115at 5706.519 kb on - strand, within PfGW456L13_5115at 5706.584 kb on + strand, within PfGW456L13_5115at 5706.584 kb on + strand, within PfGW456L13_5115at 5706.584 kb on + strand, within PfGW456L13_5115at 5706.585 kb on - strand, within PfGW456L13_5115at 5706.649 kb on - strand, within PfGW456L13_5115at 5706.873 kb on + strand, within PfGW456L13_5115at 5706.873 kb on + strand, within PfGW456L13_5115at 5706.874 kb on - strand, within PfGW456L13_5115at 5706.874 kb on - strand, within PfGW456L13_5115at 5706.874 kb on - strand, within PfGW456L13_5115at 5706.874 kb on - strand, within PfGW456L13_5115at 5707.008 kb on + strandat 5707.008 kb on + strandat 5707.009 kb on - strandat 5707.014 kb on + strandat 5707.014 kb on + strandat 5707.015 kb on - strandat 5707.025 kb on + strandat 5707.026 kb on - strandat 5707.429 kb on + strand, within PfGW456L13_5116at 5707.429 kb on + strand, within PfGW456L13_5116at 5707.429 kb on + strand, within PfGW456L13_5116at 5707.429 kb on + strand, within PfGW456L13_5116at 5707.430 kb on - strand, within PfGW456L13_5116at 5707.430 kb on - strand, within PfGW456L13_5116at 5707.430 kb on - strand, within PfGW456L13_5116at 5707.466 kb on + strand, within PfGW456L13_5116at 5707.466 kb on + strand, within PfGW456L13_5116at 5707.466 kb on + strand, within PfGW456L13_5116at 5707.466 kb on + strand, within PfGW456L13_5116at 5707.466 kb on + strand, within PfGW456L13_5116at 5707.466 kb on + strand, within PfGW456L13_5116at 5707.466 kb on + strand, within PfGW456L13_5116at 5707.466 kb on + strand, within PfGW456L13_5116at 5707.466 kb on + strand, within PfGW456L13_5116at 5707.466 kb on + strand, within PfGW456L13_5116at 5707.466 kb on + strand, within PfGW456L13_5116at 5707.466 kb on + strand, within PfGW456L13_5116at 5707.466 kb on + strand, within PfGW456L13_5116at 5707.466 kb on + strand, within PfGW456L13_5116at 5707.466 kb on + strand, within PfGW456L13_5116at 5707.466 kb on + strand, within PfGW456L13_5116at 5707.466 kb on + strand, within PfGW456L13_5116at 5707.466 kb on + strand, within PfGW456L13_5116at 5707.466 kb on + strand, within PfGW456L13_5116at 5707.466 kb on + strand, within PfGW456L13_5116at 5707.466 kb on + strand, within PfGW456L13_5116at 5707.467 kb on - strand, within PfGW456L13_5116at 5707.467 kb on - strand, within PfGW456L13_5116at 5707.467 kb on - strand, within PfGW456L13_5116at 5707.467 kb on - strand, within PfGW456L13_5116at 5707.467 kb on - strand, within PfGW456L13_5116at 5707.467 kb on - strand, within PfGW456L13_5116at 5707.467 kb on - strand, within PfGW456L13_5116at 5707.467 kb on - strand, within PfGW456L13_5116at 5707.467 kb on - strand, within PfGW456L13_5116at 5707.537 kb on + strand, within PfGW456L13_5116at 5707.537 kb on + strand, within PfGW456L13_5116at 5707.537 kb on + strand, within PfGW456L13_5116at 5707.537 kb on + strand, within PfGW456L13_5116at 5707.538 kb on - strand, within PfGW456L13_5116at 5707.550 kb on + strand, within PfGW456L13_5116at 5707.550 kb on + strand, within PfGW456L13_5116at 5707.551 kb on - strand, within PfGW456L13_5116at 5707.816 kb on + strand, within PfGW456L13_5116at 5707.816 kb on + strand, within PfGW456L13_5116at 5707.816 kb on + strand, within PfGW456L13_5116at 5707.816 kb on + strand, within PfGW456L13_5116at 5707.816 kb on + strand, within PfGW456L13_5116at 5707.817 kb on - strand, within PfGW456L13_5116at 5707.817 kb on - strand, within PfGW456L13_5116at 5707.817 kb on - strand, within PfGW456L13_5116at 5707.884 kb on - strand, within PfGW456L13_5116at 5707.965 kb on + strand, within PfGW456L13_5116at 5707.984 kb on + strand, within PfGW456L13_5116at 5707.984 kb on + strand, within PfGW456L13_5116at 5707.984 kb on + strand, within PfGW456L13_5116at 5707.984 kb on + strand, within PfGW456L13_5116at 5707.984 kb on + strand, within PfGW456L13_5116at 5707.985 kb on - strand, within PfGW456L13_5116at 5707.985 kb on - strand, within PfGW456L13_5116at 5707.985 kb on - strand, within PfGW456L13_5116at 5707.985 kb on - strand, within PfGW456L13_5116

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Per-strain Table

Position Strand Gene LocusTag Fraction LB control
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5,705,187 + PfGW456L13_5114 0.51 +0.0
5,705,187 + PfGW456L13_5114 0.51 -0.1
5,705,240 + PfGW456L13_5114 0.54 +0.4
5,705,241 - PfGW456L13_5114 0.54 +0.1
5,705,292 + PfGW456L13_5114 0.57 +0.4
5,705,293 - PfGW456L13_5114 0.57 +0.1
5,705,354 + PfGW456L13_5114 0.61 -0.5
5,705,354 + PfGW456L13_5114 0.61 -0.2
5,705,354 + PfGW456L13_5114 0.61 -0.9
5,705,354 + PfGW456L13_5114 0.61 -0.6
5,705,354 + PfGW456L13_5114 0.61 -0.7
5,705,354 + PfGW456L13_5114 0.61 +0.1
5,705,354 + PfGW456L13_5114 0.61 +0.7
5,705,354 + PfGW456L13_5114 0.61 +0.3
5,705,354 + PfGW456L13_5114 0.61 -0.5
5,705,355 - PfGW456L13_5114 0.61 -0.6
5,705,355 - PfGW456L13_5114 0.61 +0.3
5,705,355 - PfGW456L13_5114 0.61 +1.0
5,705,355 - PfGW456L13_5114 0.61 +0.0
5,705,355 - PfGW456L13_5114 0.61 +0.2
5,705,364 + PfGW456L13_5114 0.61 -0.6
5,705,364 + PfGW456L13_5114 0.61 -0.9
5,705,365 - PfGW456L13_5114 0.61 +0.6
5,705,365 - PfGW456L13_5114 0.61 +0.2
5,705,421 + PfGW456L13_5114 0.65 +0.3
5,705,422 - PfGW456L13_5114 0.65 +1.1
5,705,422 - PfGW456L13_5114 0.65 -0.3
5,705,422 - PfGW456L13_5114 0.65 -0.1
5,705,422 - PfGW456L13_5114 0.65 +0.1
5,705,567 + PfGW456L13_5114 0.73 -1.1
5,705,567 + PfGW456L13_5114 0.73 -0.3
5,705,567 + PfGW456L13_5114 0.73 +0.2
5,705,567 + PfGW456L13_5114 0.73 -0.5
5,705,567 + PfGW456L13_5114 0.73 +0.2
5,705,567 + PfGW456L13_5114 0.73 -0.3
5,705,568 - PfGW456L13_5114 0.73 -1.4
5,705,568 - PfGW456L13_5114 0.73 +0.0
5,705,630 + PfGW456L13_5114 0.77 -0.7
5,705,630 + PfGW456L13_5114 0.77 -0.0
5,705,630 + PfGW456L13_5114 0.77 +0.1
5,705,631 - PfGW456L13_5114 0.77 -0.6
5,705,631 - PfGW456L13_5114 0.77 +0.8
5,705,721 + PfGW456L13_5114 0.82 -0.6
5,705,722 - PfGW456L13_5114 0.82 -0.3
5,705,722 - PfGW456L13_5114 0.82 +0.5
5,705,722 - PfGW456L13_5114 0.82 +0.3
5,705,722 - PfGW456L13_5114 0.82 -0.1
5,705,946 + -1.3
5,705,946 + +0.2
5,705,947 - -0.9
5,705,947 - +0.5
5,705,990 + -1.0
5,705,990 + +0.6
5,705,990 + -0.5
5,706,018 - +0.4
5,706,018 - +0.6
5,706,018 - +0.2
5,706,024 + -0.9
5,706,024 + -0.6
5,706,025 - +1.8
5,706,092 + -0.6
5,706,092 + +0.8
5,706,093 - +0.3
5,706,117 + +0.8
5,706,117 + +0.1
5,706,117 + +0.1
5,706,118 - -0.2
5,706,118 - -0.2
5,706,118 - +0.0
5,706,118 - +1.0
5,706,119 + -0.2
5,706,120 - -1.2
5,706,120 - +0.3
5,706,120 - +0.6
5,706,120 - +0.7
5,706,186 - +1.0
5,706,269 + PfGW456L13_5115 0.12 +0.6
5,706,270 - PfGW456L13_5115 0.12 -0.1
5,706,270 - PfGW456L13_5115 0.12 +0.9
5,706,270 - PfGW456L13_5115 0.12 +0.2
5,706,399 - PfGW456L13_5115 0.28 +0.3
5,706,399 - PfGW456L13_5115 0.28 -0.3
5,706,399 - PfGW456L13_5115 0.28 +0.4
5,706,399 - PfGW456L13_5115 0.28 +0.5
5,706,411 - PfGW456L13_5115 0.29 +0.0
5,706,518 + PfGW456L13_5115 0.42 +0.2
5,706,518 + PfGW456L13_5115 0.42 +0.5
5,706,519 - PfGW456L13_5115 0.42 +0.5
5,706,584 + PfGW456L13_5115 0.50 -0.3
5,706,584 + PfGW456L13_5115 0.50 -1.1
5,706,584 + PfGW456L13_5115 0.50 +0.7
5,706,585 - PfGW456L13_5115 0.50 +0.5
5,706,649 - PfGW456L13_5115 0.58 +0.0
5,706,873 + PfGW456L13_5115 0.85 -0.2
5,706,873 + PfGW456L13_5115 0.85 +0.4
5,706,874 - PfGW456L13_5115 0.85 -0.1
5,706,874 - PfGW456L13_5115 0.85 +0.3
5,706,874 - PfGW456L13_5115 0.85 +0.9
5,706,874 - PfGW456L13_5115 0.85 +0.8
5,707,008 + +0.4
5,707,008 + +0.8
5,707,009 - +0.9
5,707,014 + +0.1
5,707,014 + +0.5
5,707,015 - -1.2
5,707,025 + -0.3
5,707,026 - -0.7
5,707,429 + PfGW456L13_5116 0.30 +0.5
5,707,429 + PfGW456L13_5116 0.30 +0.4
5,707,429 + PfGW456L13_5116 0.30 +0.7
5,707,429 + PfGW456L13_5116 0.30 +0.4
5,707,430 - PfGW456L13_5116 0.30 +0.4
5,707,430 - PfGW456L13_5116 0.30 -0.1
5,707,430 - PfGW456L13_5116 0.30 +0.5
5,707,466 + PfGW456L13_5116 0.33 +0.8
5,707,466 + PfGW456L13_5116 0.33 -2.0
5,707,466 + PfGW456L13_5116 0.33 +0.1
5,707,466 + PfGW456L13_5116 0.33 +0.2
5,707,466 + PfGW456L13_5116 0.33 +0.4
5,707,466 + PfGW456L13_5116 0.33 +0.0
5,707,466 + PfGW456L13_5116 0.33 +0.5
5,707,466 + PfGW456L13_5116 0.33 -0.5
5,707,466 + PfGW456L13_5116 0.33 -0.0
5,707,466 + PfGW456L13_5116 0.33 +0.5
5,707,466 + PfGW456L13_5116 0.33 -0.7
5,707,466 + PfGW456L13_5116 0.33 +0.1
5,707,466 + PfGW456L13_5116 0.33 -0.7
5,707,466 + PfGW456L13_5116 0.33 +0.3
5,707,466 + PfGW456L13_5116 0.33 -0.6
5,707,466 + PfGW456L13_5116 0.33 +0.5
5,707,466 + PfGW456L13_5116 0.33 -0.6
5,707,466 + PfGW456L13_5116 0.33 +0.2
5,707,466 + PfGW456L13_5116 0.33 +1.8
5,707,466 + PfGW456L13_5116 0.33 +0.8
5,707,466 + PfGW456L13_5116 0.33 +1.1
5,707,467 - PfGW456L13_5116 0.33 +0.4
5,707,467 - PfGW456L13_5116 0.33 -0.6
5,707,467 - PfGW456L13_5116 0.33 +0.7
5,707,467 - PfGW456L13_5116 0.33 +0.3
5,707,467 - PfGW456L13_5116 0.33 -0.0
5,707,467 - PfGW456L13_5116 0.33 +1.5
5,707,467 - PfGW456L13_5116 0.33 -0.5
5,707,467 - PfGW456L13_5116 0.33 +0.0
5,707,467 - PfGW456L13_5116 0.33 +0.1
5,707,537 + PfGW456L13_5116 0.37 -0.7
5,707,537 + PfGW456L13_5116 0.37 +0.8
5,707,537 + PfGW456L13_5116 0.37 +0.0
5,707,537 + PfGW456L13_5116 0.37 -0.2
5,707,538 - PfGW456L13_5116 0.38 -0.9
5,707,550 + PfGW456L13_5116 0.38 +0.7
5,707,550 + PfGW456L13_5116 0.38 +0.6
5,707,551 - PfGW456L13_5116 0.38 +0.6
5,707,816 + PfGW456L13_5116 0.57 +0.4
5,707,816 + PfGW456L13_5116 0.57 -0.2
5,707,816 + PfGW456L13_5116 0.57 +0.7
5,707,816 + PfGW456L13_5116 0.57 +0.5
5,707,816 + PfGW456L13_5116 0.57 +0.9
5,707,817 - PfGW456L13_5116 0.57 -0.0
5,707,817 - PfGW456L13_5116 0.57 +0.2
5,707,817 - PfGW456L13_5116 0.57 +0.1
5,707,884 - PfGW456L13_5116 0.61 +0.3
5,707,965 + PfGW456L13_5116 0.67 +1.0
5,707,984 + PfGW456L13_5116 0.68 -2.8
5,707,984 + PfGW456L13_5116 0.68 +0.2
5,707,984 + PfGW456L13_5116 0.68 -2.2
5,707,984 + PfGW456L13_5116 0.68 -1.0
5,707,984 + PfGW456L13_5116 0.68 -0.7
5,707,985 - PfGW456L13_5116 0.68 +0.9
5,707,985 - PfGW456L13_5116 0.68 -1.3
5,707,985 - PfGW456L13_5116 0.68 +0.2
5,707,985 - PfGW456L13_5116 0.68 +0.6

Or see this region's nucleotide sequence