Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2094

Experiment: LB control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2092 and PfGW456L13_2093 overlap by 1 nucleotidesPfGW456L13_2093 and PfGW456L13_2094 overlap by 4 nucleotidesPfGW456L13_2094 and PfGW456L13_2095 are separated by 187 nucleotides PfGW456L13_2092 - Isoquinoline 1-oxidoreductase beta subunit (EC 1.3.99.16), at 2,296,440 to 2,298,761 _2092 PfGW456L13_2093 - Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family, at 2,298,761 to 2,299,744 _2093 PfGW456L13_2094 - CTP:molybdopterin cytidylyltransferase, at 2,299,741 to 2,300,337 _2094 PfGW456L13_2095 - Ribonuclease E (EC 3.1.26.12), at 2,300,525 to 2,303,779 _2095 Position (kb) 2299 2300 2301Strain fitness (log2 ratio) -2 -1 0 1at 2298.833 kb on + strandat 2298.833 kb on + strandat 2298.833 kb on + strandat 2298.833 kb on + strandat 2298.834 kb on - strandat 2298.834 kb on - strandat 2298.834 kb on - strandat 2299.010 kb on + strand, within PfGW456L13_2093at 2299.010 kb on + strand, within PfGW456L13_2093at 2299.010 kb on + strand, within PfGW456L13_2093at 2299.011 kb on - strand, within PfGW456L13_2093at 2299.011 kb on - strandat 2299.085 kb on - strand, within PfGW456L13_2093at 2299.176 kb on + strand, within PfGW456L13_2093at 2299.176 kb on + strand, within PfGW456L13_2093at 2299.177 kb on - strand, within PfGW456L13_2093at 2299.195 kb on + strand, within PfGW456L13_2093at 2299.196 kb on - strand, within PfGW456L13_2093at 2299.292 kb on + strand, within PfGW456L13_2093at 2299.292 kb on + strand, within PfGW456L13_2093at 2299.292 kb on + strand, within PfGW456L13_2093at 2299.292 kb on + strand, within PfGW456L13_2093at 2299.292 kb on + strand, within PfGW456L13_2093at 2299.292 kb on + strand, within PfGW456L13_2093at 2299.293 kb on - strand, within PfGW456L13_2093at 2299.362 kb on - strand, within PfGW456L13_2093at 2299.417 kb on - strand, within PfGW456L13_2093at 2299.447 kb on + strand, within PfGW456L13_2093at 2299.520 kb on + strand, within PfGW456L13_2093at 2299.645 kb on + strand, within PfGW456L13_2093at 2299.645 kb on + strand, within PfGW456L13_2093at 2299.646 kb on - strandat 2299.646 kb on - strandat 2299.646 kb on - strandat 2299.740 kb on + strandat 2299.740 kb on + strandat 2299.740 kb on + strandat 2299.741 kb on - strandat 2299.741 kb on - strandat 2299.741 kb on - strandat 2299.741 kb on - strandat 2299.741 kb on - strandat 2299.741 kb on - strandat 2299.917 kb on - strand, within PfGW456L13_2094at 2299.966 kb on + strand, within PfGW456L13_2094at 2299.966 kb on + strand, within PfGW456L13_2094at 2300.133 kb on + strand, within PfGW456L13_2094at 2300.133 kb on + strand, within PfGW456L13_2094at 2300.133 kb on + strand, within PfGW456L13_2094at 2300.133 kb on + strand, within PfGW456L13_2094at 2300.214 kb on - strand, within PfGW456L13_2094at 2300.335 kb on + strandat 2300.335 kb on + strandat 2300.335 kb on + strandat 2300.335 kb on + strandat 2300.335 kb on + strandat 2300.335 kb on + strandat 2300.335 kb on + strandat 2300.335 kb on + strandat 2300.335 kb on + strandat 2300.335 kb on + strandat 2300.335 kb on + strandat 2300.335 kb on + strandat 2300.335 kb on + strandat 2300.335 kb on + strandat 2300.335 kb on + strandat 2300.335 kb on + strandat 2300.335 kb on + strandat 2300.336 kb on - strandat 2300.336 kb on - strandat 2300.336 kb on - strandat 2300.336 kb on - strandat 2300.336 kb on - strandat 2300.336 kb on - strandat 2300.336 kb on - strandat 2300.336 kb on - strandat 2300.381 kb on + strandat 2300.382 kb on - strandat 2300.382 kb on - strandat 2300.540 kb on - strandat 2300.580 kb on - strandat 2301.111 kb on - strand, within PfGW456L13_2095at 2301.111 kb on - strand, within PfGW456L13_2095at 2301.111 kb on - strand, within PfGW456L13_2095at 2301.111 kb on - strand, within PfGW456L13_2095

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Per-strain Table

Position Strand Gene LocusTag Fraction LB control
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2,298,833 + +0.0
2,298,833 + -0.9
2,298,833 + -0.3
2,298,833 + +0.1
2,298,834 - -0.8
2,298,834 - -0.8
2,298,834 - -0.7
2,299,010 + PfGW456L13_2093 0.25 -1.3
2,299,010 + PfGW456L13_2093 0.25 +0.0
2,299,010 + PfGW456L13_2093 0.25 +0.2
2,299,011 - PfGW456L13_2093 0.25 -0.4
2,299,011 - -1.6
2,299,085 - PfGW456L13_2093 0.33 +0.2
2,299,176 + PfGW456L13_2093 0.42 +0.3
2,299,176 + PfGW456L13_2093 0.42 -0.8
2,299,177 - PfGW456L13_2093 0.42 -0.2
2,299,195 + PfGW456L13_2093 0.44 -0.9
2,299,196 - PfGW456L13_2093 0.44 +0.4
2,299,292 + PfGW456L13_2093 0.54 -1.1
2,299,292 + PfGW456L13_2093 0.54 +0.0
2,299,292 + PfGW456L13_2093 0.54 -1.2
2,299,292 + PfGW456L13_2093 0.54 +0.2
2,299,292 + PfGW456L13_2093 0.54 -0.1
2,299,292 + PfGW456L13_2093 0.54 -0.1
2,299,293 - PfGW456L13_2093 0.54 -0.8
2,299,362 - PfGW456L13_2093 0.61 +1.4
2,299,417 - PfGW456L13_2093 0.67 +0.8
2,299,447 + PfGW456L13_2093 0.70 -0.0
2,299,520 + PfGW456L13_2093 0.77 -0.5
2,299,645 + PfGW456L13_2093 0.90 -0.9
2,299,645 + PfGW456L13_2093 0.90 -1.0
2,299,646 - -0.0
2,299,646 - +0.5
2,299,646 - +0.3
2,299,740 + -0.6
2,299,740 + +0.1
2,299,740 + -0.1
2,299,741 - -0.0
2,299,741 - -0.3
2,299,741 - -0.6
2,299,741 - -0.5
2,299,741 - +0.1
2,299,741 - -0.1
2,299,917 - PfGW456L13_2094 0.29 -0.7
2,299,966 + PfGW456L13_2094 0.38 +0.0
2,299,966 + PfGW456L13_2094 0.38 -0.4
2,300,133 + PfGW456L13_2094 0.66 -0.0
2,300,133 + PfGW456L13_2094 0.66 -0.3
2,300,133 + PfGW456L13_2094 0.66 +0.3
2,300,133 + PfGW456L13_2094 0.66 -1.3
2,300,214 - PfGW456L13_2094 0.79 -0.5
2,300,335 + -0.1
2,300,335 + -0.1
2,300,335 + -0.6
2,300,335 + +0.1
2,300,335 + -0.0
2,300,335 + -0.1
2,300,335 + -0.7
2,300,335 + -0.5
2,300,335 + -0.0
2,300,335 + +0.1
2,300,335 + -0.3
2,300,335 + +0.3
2,300,335 + +0.2
2,300,335 + -0.2
2,300,335 + -0.4
2,300,335 + -0.1
2,300,335 + +0.3
2,300,336 - +1.1
2,300,336 - +0.8
2,300,336 - -0.5
2,300,336 - +1.2
2,300,336 - +0.1
2,300,336 - -0.5
2,300,336 - +0.5
2,300,336 - -0.4
2,300,381 + +0.1
2,300,382 - +0.5
2,300,382 - +1.0
2,300,540 - -2.4
2,300,580 - -0.8
2,301,111 - PfGW456L13_2095 0.18 -1.5
2,301,111 - PfGW456L13_2095 0.18 -0.2
2,301,111 - PfGW456L13_2095 0.18 -0.8
2,301,111 - PfGW456L13_2095 0.18 -0.4

Or see this region's nucleotide sequence