Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_760

Experiment: LB control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_759 and PfGW456L13_760 are separated by 67 nucleotidesPfGW456L13_760 and PfGW456L13_761 are separated by 142 nucleotides PfGW456L13_759 - Peptidase, M23/M37 family, at 864,798 to 865,694 _759 PfGW456L13_760 - Phosphate regulon metal ion transporter containing CBS domains, at 865,762 to 867,084 _760 PfGW456L13_761 - Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3), at 867,227 to 868,549 _761 Position (kb) 865 866 867 868Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 864.820 kb on + strandat 864.820 kb on + strandat 864.821 kb on - strandat 864.821 kb on - strandat 864.821 kb on - strandat 864.821 kb on - strandat 864.821 kb on - strandat 864.867 kb on + strandat 864.867 kb on + strandat 864.867 kb on + strandat 864.867 kb on + strandat 864.867 kb on + strandat 864.867 kb on + strandat 864.867 kb on + strandat 864.867 kb on + strandat 864.868 kb on - strandat 864.868 kb on - strandat 864.868 kb on - strandat 864.868 kb on - strandat 864.868 kb on - strandat 864.868 kb on - strandat 864.868 kb on - strandat 864.868 kb on - strandat 864.868 kb on - strandat 864.868 kb on - strandat 864.885 kb on + strandat 864.885 kb on + strandat 864.886 kb on - strandat 864.886 kb on - strandat 864.886 kb on - strandat 864.886 kb on - strandat 865.017 kb on + strand, within PfGW456L13_759at 865.017 kb on + strand, within PfGW456L13_759at 865.017 kb on + strand, within PfGW456L13_759at 865.017 kb on + strand, within PfGW456L13_759at 865.017 kb on + strand, within PfGW456L13_759at 865.018 kb on - strand, within PfGW456L13_759at 865.018 kb on - strand, within PfGW456L13_759at 865.018 kb on - strand, within PfGW456L13_759at 865.018 kb on - strand, within PfGW456L13_759at 865.018 kb on - strand, within PfGW456L13_759at 865.035 kb on + strand, within PfGW456L13_759at 865.036 kb on - strand, within PfGW456L13_759at 865.036 kb on - strand, within PfGW456L13_759at 865.045 kb on + strand, within PfGW456L13_759at 865.160 kb on + strand, within PfGW456L13_759at 865.160 kb on + strand, within PfGW456L13_759at 865.161 kb on - strand, within PfGW456L13_759at 865.182 kb on + strand, within PfGW456L13_759at 865.182 kb on + strand, within PfGW456L13_759at 865.182 kb on + strand, within PfGW456L13_759at 865.182 kb on + strand, within PfGW456L13_759at 865.182 kb on + strand, within PfGW456L13_759at 865.182 kb on + strand, within PfGW456L13_759at 865.182 kb on + strand, within PfGW456L13_759at 865.182 kb on + strand, within PfGW456L13_759at 865.183 kb on - strand, within PfGW456L13_759at 865.183 kb on - strand, within PfGW456L13_759at 865.183 kb on - strand, within PfGW456L13_759at 865.183 kb on - strand, within PfGW456L13_759at 865.183 kb on - strand, within PfGW456L13_759at 865.183 kb on - strand, within PfGW456L13_759at 865.183 kb on - strand, within PfGW456L13_759at 865.183 kb on - strand, within PfGW456L13_759at 865.183 kb on - strand, within PfGW456L13_759at 865.200 kb on + strand, within PfGW456L13_759at 865.201 kb on - strand, within PfGW456L13_759at 865.201 kb on - strand, within PfGW456L13_759at 865.201 kb on - strand, within PfGW456L13_759at 865.300 kb on - strand, within PfGW456L13_759at 865.300 kb on - strand, within PfGW456L13_759at 865.334 kb on - strand, within PfGW456L13_759at 865.479 kb on + strand, within PfGW456L13_759at 865.479 kb on + strand, within PfGW456L13_759at 865.480 kb on - strand, within PfGW456L13_759at 865.480 kb on - strand, within PfGW456L13_759at 865.639 kb on - strandat 865.883 kb on + strandat 865.883 kb on + strandat 865.884 kb on - strandat 865.884 kb on - strandat 865.962 kb on + strand, within PfGW456L13_760at 866.303 kb on + strand, within PfGW456L13_760at 866.303 kb on + strand, within PfGW456L13_760at 866.303 kb on + strand, within PfGW456L13_760at 866.303 kb on + strand, within PfGW456L13_760at 866.304 kb on - strand, within PfGW456L13_760at 866.304 kb on - strand, within PfGW456L13_760at 866.522 kb on + strand, within PfGW456L13_760at 866.522 kb on + strand, within PfGW456L13_760at 866.523 kb on - strand, within PfGW456L13_760at 866.523 kb on - strand, within PfGW456L13_760at 866.523 kb on - strand, within PfGW456L13_760at 866.523 kb on - strand, within PfGW456L13_760at 866.574 kb on + strand, within PfGW456L13_760at 866.600 kb on + strand, within PfGW456L13_760at 866.600 kb on + strand, within PfGW456L13_760at 866.600 kb on + strand, within PfGW456L13_760at 866.600 kb on + strand, within PfGW456L13_760at 866.601 kb on - strand, within PfGW456L13_760at 866.601 kb on - strand, within PfGW456L13_760at 866.601 kb on - strand, within PfGW456L13_760at 866.601 kb on - strand, within PfGW456L13_760at 866.601 kb on - strand, within PfGW456L13_760at 866.601 kb on - strand, within PfGW456L13_760at 866.612 kb on + strand, within PfGW456L13_760at 866.612 kb on + strand, within PfGW456L13_760at 866.613 kb on - strand, within PfGW456L13_760at 866.613 kb on - strand, within PfGW456L13_760at 866.624 kb on + strand, within PfGW456L13_760at 866.624 kb on + strand, within PfGW456L13_760at 866.625 kb on - strand, within PfGW456L13_760at 866.625 kb on - strand, within PfGW456L13_760at 866.625 kb on - strand, within PfGW456L13_760at 866.633 kb on + strand, within PfGW456L13_760at 866.633 kb on + strand, within PfGW456L13_760at 866.634 kb on - strand, within PfGW456L13_760at 866.634 kb on - strand, within PfGW456L13_760at 866.634 kb on - strand, within PfGW456L13_760at 866.634 kb on - strand, within PfGW456L13_760at 866.634 kb on - strand, within PfGW456L13_760at 866.634 kb on - strand, within PfGW456L13_760at 866.723 kb on + strand, within PfGW456L13_760at 866.723 kb on + strand, within PfGW456L13_760at 866.723 kb on + strand, within PfGW456L13_760at 866.724 kb on - strand, within PfGW456L13_760at 866.891 kb on + strand, within PfGW456L13_760at 866.891 kb on + strand, within PfGW456L13_760at 866.891 kb on + strand, within PfGW456L13_760at 866.891 kb on + strand, within PfGW456L13_760at 866.891 kb on + strand, within PfGW456L13_760at 866.891 kb on + strand, within PfGW456L13_760at 866.891 kb on + strand, within PfGW456L13_760at 866.891 kb on + strand, within PfGW456L13_760at 866.892 kb on - strand, within PfGW456L13_760at 866.892 kb on - strand, within PfGW456L13_760at 866.892 kb on - strand, within PfGW456L13_760at 867.124 kb on + strandat 867.124 kb on + strandat 867.124 kb on + strandat 867.124 kb on + strandat 867.124 kb on + strandat 867.125 kb on - strandat 867.125 kb on - strandat 867.125 kb on - strandat 867.125 kb on - strandat 867.126 kb on + strandat 867.126 kb on + strandat 867.126 kb on + strandat 867.127 kb on - strandat 867.142 kb on - strandat 867.142 kb on - strandat 867.286 kb on + strandat 867.286 kb on + strandat 867.286 kb on + strandat 867.286 kb on + strandat 867.286 kb on + strandat 867.286 kb on + strandat 867.287 kb on - strandat 867.287 kb on - strandat 867.287 kb on - strandat 867.287 kb on - strandat 867.287 kb on - strandat 867.287 kb on - strandat 867.293 kb on - strandat 867.293 kb on - strandat 867.293 kb on - strandat 867.341 kb on + strandat 867.417 kb on + strand, within PfGW456L13_761at 867.418 kb on - strand, within PfGW456L13_761at 867.418 kb on - strand, within PfGW456L13_761at 867.518 kb on - strand, within PfGW456L13_761at 867.524 kb on - strand, within PfGW456L13_761at 867.543 kb on + strand, within PfGW456L13_761at 867.543 kb on + strand, within PfGW456L13_761at 867.543 kb on + strand, within PfGW456L13_761at 867.543 kb on + strand, within PfGW456L13_761at 867.543 kb on + strand, within PfGW456L13_761at 867.543 kb on + strand, within PfGW456L13_761at 867.543 kb on + strand, within PfGW456L13_761at 867.544 kb on - strand, within PfGW456L13_761at 867.544 kb on - strand, within PfGW456L13_761at 867.544 kb on - strand, within PfGW456L13_761at 867.544 kb on - strand, within PfGW456L13_761at 867.544 kb on - strand, within PfGW456L13_761at 867.544 kb on - strand, within PfGW456L13_761at 867.870 kb on + strand, within PfGW456L13_761at 867.870 kb on + strand, within PfGW456L13_761at 867.871 kb on - strand, within PfGW456L13_761at 868.011 kb on + strand, within PfGW456L13_761at 868.011 kb on + strand, within PfGW456L13_761at 868.011 kb on + strand, within PfGW456L13_761at 868.011 kb on + strand, within PfGW456L13_761at 868.011 kb on + strand, within PfGW456L13_761at 868.011 kb on + strand, within PfGW456L13_761at 868.011 kb on + strand, within PfGW456L13_761at 868.011 kb on + strand, within PfGW456L13_761at 868.011 kb on + strand, within PfGW456L13_761at 868.011 kb on + strand, within PfGW456L13_761at 868.011 kb on + strand, within PfGW456L13_761at 868.011 kb on - strand, within PfGW456L13_761at 868.012 kb on - strand, within PfGW456L13_761at 868.012 kb on - strand, within PfGW456L13_761at 868.012 kb on - strand, within PfGW456L13_761at 868.012 kb on - strand, within PfGW456L13_761at 868.012 kb on - strand, within PfGW456L13_761at 868.012 kb on - strand, within PfGW456L13_761at 868.012 kb on - strand, within PfGW456L13_761at 868.068 kb on + strand, within PfGW456L13_761at 868.068 kb on + strand, within PfGW456L13_761at 868.069 kb on - strand, within PfGW456L13_761at 868.069 kb on - strand, within PfGW456L13_761

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Per-strain Table

Position Strand Gene LocusTag Fraction LB control
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864,820 + +0.6
864,820 + -0.8
864,821 - -1.0
864,821 - -0.2
864,821 - -0.1
864,821 - -0.0
864,821 - -0.6
864,867 + +0.3
864,867 + -0.8
864,867 + +0.1
864,867 + +0.5
864,867 + +0.1
864,867 + +0.4
864,867 + -2.2
864,867 + +0.5
864,868 - -1.3
864,868 - -1.1
864,868 - -0.3
864,868 - +0.7
864,868 - +0.2
864,868 - -0.5
864,868 - +0.2
864,868 - +0.0
864,868 - +1.4
864,868 - +0.2
864,885 + -0.1
864,885 + +0.5
864,886 - -0.2
864,886 - +0.2
864,886 - +0.4
864,886 - -0.7
865,017 + PfGW456L13_759 0.24 +0.3
865,017 + PfGW456L13_759 0.24 +0.3
865,017 + PfGW456L13_759 0.24 +0.3
865,017 + PfGW456L13_759 0.24 -0.6
865,017 + PfGW456L13_759 0.24 -0.1
865,018 - PfGW456L13_759 0.25 -0.4
865,018 - PfGW456L13_759 0.25 +0.9
865,018 - PfGW456L13_759 0.25 -0.4
865,018 - PfGW456L13_759 0.25 +1.0
865,018 - PfGW456L13_759 0.25 +0.5
865,035 + PfGW456L13_759 0.26 -1.3
865,036 - PfGW456L13_759 0.27 +0.3
865,036 - PfGW456L13_759 0.27 -1.1
865,045 + PfGW456L13_759 0.28 -0.3
865,160 + PfGW456L13_759 0.40 +0.6
865,160 + PfGW456L13_759 0.40 -0.2
865,161 - PfGW456L13_759 0.40 +0.6
865,182 + PfGW456L13_759 0.43 +1.1
865,182 + PfGW456L13_759 0.43 +0.5
865,182 + PfGW456L13_759 0.43 -0.2
865,182 + PfGW456L13_759 0.43 +0.4
865,182 + PfGW456L13_759 0.43 -0.0
865,182 + PfGW456L13_759 0.43 -0.6
865,182 + PfGW456L13_759 0.43 +0.1
865,182 + PfGW456L13_759 0.43 -0.5
865,183 - PfGW456L13_759 0.43 -0.8
865,183 - PfGW456L13_759 0.43 -0.8
865,183 - PfGW456L13_759 0.43 +0.5
865,183 - PfGW456L13_759 0.43 +0.7
865,183 - PfGW456L13_759 0.43 -0.6
865,183 - PfGW456L13_759 0.43 +0.4
865,183 - PfGW456L13_759 0.43 +0.1
865,183 - PfGW456L13_759 0.43 -0.8
865,183 - PfGW456L13_759 0.43 -0.5
865,200 + PfGW456L13_759 0.45 -0.3
865,201 - PfGW456L13_759 0.45 +1.2
865,201 - PfGW456L13_759 0.45 -0.9
865,201 - PfGW456L13_759 0.45 +0.4
865,300 - PfGW456L13_759 0.56 +0.3
865,300 - PfGW456L13_759 0.56 -1.7
865,334 - PfGW456L13_759 0.60 +0.9
865,479 + PfGW456L13_759 0.76 +0.8
865,479 + PfGW456L13_759 0.76 +0.4
865,480 - PfGW456L13_759 0.76 -0.6
865,480 - PfGW456L13_759 0.76 -0.1
865,639 - +0.3
865,883 + -1.7
865,883 + +1.6
865,884 - -0.7
865,884 - -2.4
865,962 + PfGW456L13_760 0.15 -0.6
866,303 + PfGW456L13_760 0.41 -1.2
866,303 + PfGW456L13_760 0.41 -0.3
866,303 + PfGW456L13_760 0.41 -1.2
866,303 + PfGW456L13_760 0.41 -2.1
866,304 - PfGW456L13_760 0.41 -2.0
866,304 - PfGW456L13_760 0.41 -0.8
866,522 + PfGW456L13_760 0.57 -2.4
866,522 + PfGW456L13_760 0.57 -2.6
866,523 - PfGW456L13_760 0.58 -2.3
866,523 - PfGW456L13_760 0.58 -1.7
866,523 - PfGW456L13_760 0.58 -2.9
866,523 - PfGW456L13_760 0.58 -3.5
866,574 + PfGW456L13_760 0.61 -2.9
866,600 + PfGW456L13_760 0.63 +0.3
866,600 + PfGW456L13_760 0.63 -0.6
866,600 + PfGW456L13_760 0.63 -1.6
866,600 + PfGW456L13_760 0.63 -2.5
866,601 - PfGW456L13_760 0.63 -2.8
866,601 - PfGW456L13_760 0.63 -4.4
866,601 - PfGW456L13_760 0.63 -0.6
866,601 - PfGW456L13_760 0.63 -1.6
866,601 - PfGW456L13_760 0.63 -1.8
866,601 - PfGW456L13_760 0.63 -1.7
866,612 + PfGW456L13_760 0.64 -1.5
866,612 + PfGW456L13_760 0.64 -2.5
866,613 - PfGW456L13_760 0.64 -2.3
866,613 - PfGW456L13_760 0.64 +0.2
866,624 + PfGW456L13_760 0.65 +0.1
866,624 + PfGW456L13_760 0.65 -3.5
866,625 - PfGW456L13_760 0.65 -2.8
866,625 - PfGW456L13_760 0.65 -1.4
866,625 - PfGW456L13_760 0.65 -1.7
866,633 + PfGW456L13_760 0.66 -3.4
866,633 + PfGW456L13_760 0.66 -4.1
866,634 - PfGW456L13_760 0.66 -1.6
866,634 - PfGW456L13_760 0.66 -1.5
866,634 - PfGW456L13_760 0.66 -0.1
866,634 - PfGW456L13_760 0.66 -2.4
866,634 - PfGW456L13_760 0.66 -1.8
866,634 - PfGW456L13_760 0.66 -3.0
866,723 + PfGW456L13_760 0.73 -2.5
866,723 + PfGW456L13_760 0.73 -2.8
866,723 + PfGW456L13_760 0.73 -3.0
866,724 - PfGW456L13_760 0.73 -2.6
866,891 + PfGW456L13_760 0.85 -2.2
866,891 + PfGW456L13_760 0.85 -3.6
866,891 + PfGW456L13_760 0.85 -0.2
866,891 + PfGW456L13_760 0.85 -3.0
866,891 + PfGW456L13_760 0.85 -0.2
866,891 + PfGW456L13_760 0.85 -1.4
866,891 + PfGW456L13_760 0.85 -0.5
866,891 + PfGW456L13_760 0.85 -1.5
866,892 - PfGW456L13_760 0.85 -1.1
866,892 - PfGW456L13_760 0.85 -1.6
866,892 - PfGW456L13_760 0.85 -1.9
867,124 + -0.8
867,124 + -1.9
867,124 + -1.7
867,124 + +0.1
867,124 + -1.2
867,125 - -0.3
867,125 - +1.0
867,125 - -3.4
867,125 - +1.7
867,126 + -1.1
867,126 + +2.4
867,126 + +0.5
867,127 - +0.4
867,142 - -0.5
867,142 - -1.4
867,286 + -0.9
867,286 + -1.0
867,286 + -0.1
867,286 + -0.0
867,286 + -2.0
867,286 + +0.3
867,287 - -1.3
867,287 - -0.9
867,287 - +0.2
867,287 - -1.1
867,287 - -0.5
867,287 - +0.2
867,293 - -0.2
867,293 - -0.1
867,293 - -0.8
867,341 + -0.4
867,417 + PfGW456L13_761 0.14 -0.3
867,418 - PfGW456L13_761 0.14 -0.9
867,418 - PfGW456L13_761 0.14 +0.2
867,518 - PfGW456L13_761 0.22 -1.4
867,524 - PfGW456L13_761 0.22 +0.1
867,543 + PfGW456L13_761 0.24 +0.3
867,543 + PfGW456L13_761 0.24 -0.5
867,543 + PfGW456L13_761 0.24 +0.1
867,543 + PfGW456L13_761 0.24 -0.7
867,543 + PfGW456L13_761 0.24 +0.5
867,543 + PfGW456L13_761 0.24 +0.3
867,543 + PfGW456L13_761 0.24 -0.3
867,544 - PfGW456L13_761 0.24 +0.1
867,544 - PfGW456L13_761 0.24 -0.6
867,544 - PfGW456L13_761 0.24 +0.8
867,544 - PfGW456L13_761 0.24 -0.1
867,544 - PfGW456L13_761 0.24 -0.1
867,544 - PfGW456L13_761 0.24 -1.3
867,870 + PfGW456L13_761 0.49 +0.6
867,870 + PfGW456L13_761 0.49 -0.6
867,871 - PfGW456L13_761 0.49 +0.3
868,011 + PfGW456L13_761 0.59 -0.2
868,011 + PfGW456L13_761 0.59 +0.3
868,011 + PfGW456L13_761 0.59 -0.9
868,011 + PfGW456L13_761 0.59 +0.6
868,011 + PfGW456L13_761 0.59 -0.1
868,011 + PfGW456L13_761 0.59 -1.0
868,011 + PfGW456L13_761 0.59 -0.1
868,011 + PfGW456L13_761 0.59 +0.4
868,011 + PfGW456L13_761 0.59 -0.5
868,011 + PfGW456L13_761 0.59 -0.8
868,011 + PfGW456L13_761 0.59 -0.4
868,011 - PfGW456L13_761 0.59 -0.6
868,012 - PfGW456L13_761 0.59 +0.6
868,012 - PfGW456L13_761 0.59 +0.4
868,012 - PfGW456L13_761 0.59 +0.0
868,012 - PfGW456L13_761 0.59 -0.6
868,012 - PfGW456L13_761 0.59 -0.1
868,012 - PfGW456L13_761 0.59 +1.4
868,012 - PfGW456L13_761 0.59 +0.7
868,068 + PfGW456L13_761 0.64 +0.8
868,068 + PfGW456L13_761 0.64 +0.0
868,069 - PfGW456L13_761 0.64 +0.6
868,069 - PfGW456L13_761 0.64 +0.2

Or see this region's nucleotide sequence