Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4873

Experiment: LB control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4870 and PfGW456L13_4871 are separated by 8 nucleotidesPfGW456L13_4871 and PfGW456L13_4872 are separated by 34 nucleotidesPfGW456L13_4872 and PfGW456L13_4873 are separated by 101 nucleotidesPfGW456L13_4873 and PfGW456L13_4874 are separated by 50 nucleotidesPfGW456L13_4874 and PfGW456L13_4875 are separated by 284 nucleotides PfGW456L13_4870 - Chaperone protein HscB, at 5,436,090 to 5,436,611 _4870 PfGW456L13_4871 - Iron binding protein IscA for iron-sulfur cluster assembly, at 5,436,620 to 5,436,943 _4871 PfGW456L13_4872 - Iron-sulfur cluster assembly scaffold protein IscU, at 5,436,978 to 5,437,364 _4872 PfGW456L13_4873 - Cysteine desulfurase (EC 2.8.1.7), IscS subfamily, at 5,437,466 to 5,438,680 _4873 PfGW456L13_4874 - Iron-sulfur cluster regulator IscR, at 5,438,731 to 5,439,192 _4874 PfGW456L13_4875 - Serine acetyltransferase (EC 2.3.1.30), at 5,439,477 to 5,440,253 _4875 Position (kb) 5437 5438 5439Strain fitness (log2 ratio) -3 -2 -1 0 1at 5436.956 kb on - strandat 5437.408 kb on - strandat 5437.408 kb on - strandat 5437.408 kb on - strandat 5437.437 kb on - strandat 5437.468 kb on - strandat 5438.810 kb on - strand, within PfGW456L13_4874at 5438.819 kb on - strand, within PfGW456L13_4874at 5438.819 kb on - strand, within PfGW456L13_4874at 5438.917 kb on - strand, within PfGW456L13_4874at 5438.917 kb on - strand, within PfGW456L13_4874at 5439.030 kb on - strand, within PfGW456L13_4874at 5439.102 kb on - strand, within PfGW456L13_4874at 5439.102 kb on - strand, within PfGW456L13_4874at 5439.167 kb on - strandat 5439.211 kb on - strandat 5439.231 kb on - strandat 5439.231 kb on - strandat 5439.352 kb on + strandat 5439.352 kb on + strandat 5439.352 kb on + strandat 5439.352 kb on + strandat 5439.353 kb on - strandat 5439.353 kb on - strandat 5439.353 kb on - strandat 5439.353 kb on - strandat 5439.353 kb on - strandat 5439.354 kb on + strandat 5439.354 kb on + strandat 5439.354 kb on + strandat 5439.354 kb on + strandat 5439.354 kb on + strandat 5439.354 kb on + strandat 5439.354 kb on + strandat 5439.354 kb on + strandat 5439.354 kb on + strandat 5439.354 kb on + strandat 5439.355 kb on - strandat 5439.355 kb on - strandat 5439.355 kb on - strandat 5439.355 kb on - strandat 5439.424 kb on + strandat 5439.425 kb on - strandat 5439.425 kb on - strandat 5439.425 kb on - strandat 5439.478 kb on + strandat 5439.478 kb on + strandat 5439.479 kb on - strandat 5439.556 kb on + strand, within PfGW456L13_4875at 5439.556 kb on + strand, within PfGW456L13_4875at 5439.556 kb on + strand, within PfGW456L13_4875at 5439.556 kb on + strand, within PfGW456L13_4875at 5439.556 kb on + strand, within PfGW456L13_4875at 5439.557 kb on - strand, within PfGW456L13_4875at 5439.557 kb on - strand, within PfGW456L13_4875at 5439.557 kb on - strand, within PfGW456L13_4875

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Per-strain Table

Position Strand Gene LocusTag Fraction LB control
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5,436,956 - +0.9
5,437,408 - -0.7
5,437,408 - -0.4
5,437,408 - +0.2
5,437,437 - -0.1
5,437,468 - -0.5
5,438,810 - PfGW456L13_4874 0.17 -0.8
5,438,819 - PfGW456L13_4874 0.19 -0.8
5,438,819 - PfGW456L13_4874 0.19 -1.6
5,438,917 - PfGW456L13_4874 0.40 +0.3
5,438,917 - PfGW456L13_4874 0.40 -0.3
5,439,030 - PfGW456L13_4874 0.65 +0.3
5,439,102 - PfGW456L13_4874 0.80 -0.6
5,439,102 - PfGW456L13_4874 0.80 -0.7
5,439,167 - -0.0
5,439,211 - -0.7
5,439,231 - +0.8
5,439,231 - +0.3
5,439,352 + -0.3
5,439,352 + -0.8
5,439,352 + -0.4
5,439,352 + -0.3
5,439,353 - -0.2
5,439,353 - -0.4
5,439,353 - -1.0
5,439,353 - -0.1
5,439,353 - +0.4
5,439,354 + -0.5
5,439,354 + -3.3
5,439,354 + +0.2
5,439,354 + +0.5
5,439,354 + -0.6
5,439,354 + -0.3
5,439,354 + +0.3
5,439,354 + -3.4
5,439,354 + -1.2
5,439,354 + -2.7
5,439,355 - -0.0
5,439,355 - -1.2
5,439,355 - -0.4
5,439,355 - -0.1
5,439,424 + +0.4
5,439,425 - -1.3
5,439,425 - -0.0
5,439,425 - +0.2
5,439,478 + -0.6
5,439,478 + +0.4
5,439,479 - -0.6
5,439,556 + PfGW456L13_4875 0.10 -1.7
5,439,556 + PfGW456L13_4875 0.10 +0.2
5,439,556 + PfGW456L13_4875 0.10 -0.7
5,439,556 + PfGW456L13_4875 0.10 -0.4
5,439,556 + PfGW456L13_4875 0.10 +0.8
5,439,557 - PfGW456L13_4875 0.10 +0.2
5,439,557 - PfGW456L13_4875 0.10 -1.8
5,439,557 - PfGW456L13_4875 0.10 -0.2

Or see this region's nucleotide sequence