Experiment: LB control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_225 and PfGW456L13_226 are separated by 100 nucleotides PfGW456L13_226 and PfGW456L13_227 overlap by 4 nucleotides PfGW456L13_227 and PfGW456L13_228 are separated by 401 nucleotides
PfGW456L13_225 - Methyl-accepting chemotaxis protein, at 266,635 to 268,572
_225
PfGW456L13_226 - FIG00959437: hypothetical protein, at 268,673 to 268,975
_226
PfGW456L13_227 - FIG00958420: hypothetical protein, at 268,972 to 269,202
_227
PfGW456L13_228 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 269,604 to 271,214
_228
Position (kb) 268
269
270 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 268.148 kb on + strand, within PfGW456L13_225 at 268.148 kb on + strand, within PfGW456L13_225 at 268.149 kb on - strand, within PfGW456L13_225 at 268.149 kb on - strand, within PfGW456L13_225 at 268.211 kb on + strand, within PfGW456L13_225 at 268.211 kb on + strand, within PfGW456L13_225 at 268.211 kb on + strand, within PfGW456L13_225 at 268.211 kb on + strand, within PfGW456L13_225 at 268.211 kb on + strand, within PfGW456L13_225 at 268.212 kb on - strand, within PfGW456L13_225 at 268.212 kb on - strand, within PfGW456L13_225 at 268.212 kb on - strand, within PfGW456L13_225 at 268.212 kb on - strand, within PfGW456L13_225 at 268.212 kb on - strand, within PfGW456L13_225 at 268.280 kb on + strand, within PfGW456L13_225 at 268.372 kb on - strand, within PfGW456L13_225 at 268.448 kb on + strand at 268.448 kb on + strand at 268.448 kb on + strand at 268.448 kb on + strand at 268.448 kb on + strand at 268.448 kb on + strand at 268.448 kb on + strand at 268.448 kb on + strand at 268.449 kb on - strand at 268.449 kb on - strand at 268.481 kb on + strand at 268.481 kb on + strand at 268.481 kb on + strand at 268.481 kb on + strand at 268.481 kb on + strand at 268.481 kb on + strand at 268.481 kb on + strand at 268.482 kb on - strand at 268.482 kb on - strand at 268.482 kb on - strand at 268.482 kb on - strand at 268.482 kb on - strand at 268.482 kb on - strand at 268.482 kb on - strand at 268.482 kb on - strand at 268.503 kb on + strand at 268.504 kb on - strand at 268.552 kb on - strand at 268.590 kb on + strand at 268.590 kb on + strand at 268.590 kb on + strand at 268.590 kb on + strand at 268.590 kb on + strand at 268.590 kb on + strand at 268.590 kb on + strand at 268.591 kb on - strand at 268.833 kb on + strand, within PfGW456L13_226 at 268.834 kb on - strand, within PfGW456L13_226 at 268.924 kb on - strand, within PfGW456L13_226 at 268.968 kb on + strand at 268.968 kb on + strand at 268.969 kb on - strand at 269.235 kb on - strand at 269.268 kb on + strand at 269.269 kb on - strand at 269.270 kb on + strand at 269.321 kb on + strand at 269.321 kb on + strand at 269.321 kb on + strand at 269.321 kb on + strand at 269.321 kb on + strand at 269.321 kb on + strand at 269.322 kb on - strand at 269.322 kb on - strand at 269.322 kb on - strand at 269.322 kb on - strand at 269.333 kb on + strand at 269.368 kb on + strand at 269.369 kb on - strand at 269.369 kb on - strand at 269.369 kb on - strand at 269.369 kb on - strand at 269.369 kb on - strand at 269.369 kb on - strand at 269.372 kb on + strand at 269.372 kb on + strand at 269.372 kb on + strand at 269.372 kb on + strand at 269.372 kb on + strand at 269.372 kb on + strand at 269.373 kb on - strand at 269.373 kb on - strand at 269.373 kb on - strand at 269.373 kb on - strand at 269.373 kb on - strand at 269.373 kb on - strand at 269.466 kb on + strand at 269.466 kb on + strand at 269.466 kb on + strand at 269.467 kb on - strand at 269.467 kb on - strand at 269.467 kb on - strand at 269.467 kb on - strand at 269.467 kb on - strand at 269.473 kb on + strand at 269.474 kb on - strand at 269.491 kb on - strand at 269.542 kb on + strand at 269.542 kb on + strand at 269.542 kb on + strand at 269.542 kb on + strand at 269.542 kb on + strand at 269.543 kb on - strand at 269.543 kb on - strand at 269.543 kb on - strand at 269.543 kb on - strand at 269.543 kb on - strand at 269.543 kb on - strand at 269.543 kb on - strand at 269.543 kb on - strand at 269.543 kb on - strand at 269.543 kb on - strand at 269.543 kb on - strand at 269.543 kb on - strand at 269.600 kb on + strand at 269.600 kb on + strand at 269.600 kb on + strand at 269.600 kb on + strand at 269.601 kb on + strand at 269.601 kb on - strand at 269.601 kb on - strand at 269.603 kb on + strand at 269.604 kb on - strand at 269.892 kb on + strand, within PfGW456L13_228 at 269.892 kb on + strand, within PfGW456L13_228 at 269.892 kb on + strand, within PfGW456L13_228 at 269.893 kb on - strand, within PfGW456L13_228 at 269.931 kb on + strand, within PfGW456L13_228 at 269.932 kb on - strand, within PfGW456L13_228 at 269.932 kb on - strand, within PfGW456L13_228 at 269.932 kb on - strand, within PfGW456L13_228 at 269.932 kb on - strand, within PfGW456L13_228 at 269.940 kb on + strand, within PfGW456L13_228 at 269.940 kb on + strand, within PfGW456L13_228 at 269.940 kb on + strand, within PfGW456L13_228 at 269.940 kb on + strand, within PfGW456L13_228 at 269.941 kb on - strand, within PfGW456L13_228 at 269.941 kb on - strand, within PfGW456L13_228 at 269.941 kb on - strand, within PfGW456L13_228 at 269.941 kb on - strand, within PfGW456L13_228 at 269.941 kb on - strand, within PfGW456L13_228 at 269.941 kb on - strand, within PfGW456L13_228 at 269.941 kb on - strand, within PfGW456L13_228 at 269.941 kb on - strand, within PfGW456L13_228 at 269.941 kb on - strand, within PfGW456L13_228 at 269.941 kb on - strand, within PfGW456L13_228 at 269.941 kb on - strand, within PfGW456L13_228 at 269.944 kb on + strand, within PfGW456L13_228 at 269.944 kb on + strand, within PfGW456L13_228 at 269.944 kb on + strand, within PfGW456L13_228 at 269.944 kb on + strand, within PfGW456L13_228 at 269.945 kb on - strand, within PfGW456L13_228 at 269.945 kb on - strand, within PfGW456L13_228 at 269.945 kb on - strand, within PfGW456L13_228 at 269.945 kb on - strand, within PfGW456L13_228 at 270.141 kb on + strand, within PfGW456L13_228 at 270.142 kb on - strand, within PfGW456L13_228 at 270.163 kb on + strand, within PfGW456L13_228
Per-strain Table
Position Strand Gene LocusTag Fraction LB control remove 268,148 + PfGW456L13_225 0.78 +0.3 268,148 + PfGW456L13_225 0.78 +0.1 268,149 - PfGW456L13_225 0.78 +0.5 268,149 - PfGW456L13_225 0.78 +0.1 268,211 + PfGW456L13_225 0.81 +0.1 268,211 + PfGW456L13_225 0.81 +0.1 268,211 + PfGW456L13_225 0.81 -1.3 268,211 + PfGW456L13_225 0.81 -0.4 268,211 + PfGW456L13_225 0.81 -0.8 268,212 - PfGW456L13_225 0.81 -0.2 268,212 - PfGW456L13_225 0.81 +0.4 268,212 - PfGW456L13_225 0.81 +0.2 268,212 - PfGW456L13_225 0.81 +0.4 268,212 - PfGW456L13_225 0.81 -0.4 268,280 + PfGW456L13_225 0.85 -0.2 268,372 - PfGW456L13_225 0.90 +0.5 268,448 + +0.4 268,448 + -0.2 268,448 + -0.4 268,448 + -0.7 268,448 + +0.4 268,448 + -1.1 268,448 + -0.5 268,448 + +1.3 268,449 - -0.2 268,449 - +0.1 268,481 + +0.0 268,481 + +0.1 268,481 + +0.8 268,481 + +0.2 268,481 + -0.4 268,481 + -0.0 268,481 + -0.4 268,482 - -1.2 268,482 - -0.5 268,482 - -0.2 268,482 - -0.7 268,482 - -0.2 268,482 - -0.5 268,482 - -0.4 268,482 - -0.4 268,503 + +0.7 268,504 - +1.3 268,552 - +0.6 268,590 + +0.4 268,590 + -0.3 268,590 + -0.8 268,590 + -0.5 268,590 + -0.6 268,590 + -0.4 268,590 + -0.3 268,591 - -0.2 268,833 + PfGW456L13_226 0.53 -0.1 268,834 - PfGW456L13_226 0.53 -0.8 268,924 - PfGW456L13_226 0.83 +0.0 268,968 + +0.0 268,968 + -0.4 268,969 - -0.5 269,235 - +0.1 269,268 + -0.4 269,269 - +0.8 269,270 + -1.0 269,321 + +0.2 269,321 + +0.4 269,321 + -0.4 269,321 + -0.6 269,321 + +0.4 269,321 + +0.3 269,322 - +0.1 269,322 - +0.3 269,322 - +0.2 269,322 - -0.1 269,333 + -0.6 269,368 + -0.3 269,369 - -0.6 269,369 - -0.1 269,369 - +0.8 269,369 - +0.9 269,369 - +0.7 269,369 - -0.2 269,372 + -0.7 269,372 + +0.6 269,372 + -0.1 269,372 + +0.7 269,372 + -0.6 269,372 + -0.4 269,373 - +1.1 269,373 - +1.9 269,373 - -0.2 269,373 - -0.3 269,373 - +0.2 269,373 - +0.3 269,466 + +0.1 269,466 + +0.1 269,466 + +0.4 269,467 - +0.0 269,467 - -0.4 269,467 - -0.1 269,467 - -0.7 269,467 - -0.5 269,473 + +0.2 269,474 - +0.0 269,491 - +0.1 269,542 + -0.2 269,542 + +0.6 269,542 + -0.4 269,542 + -2.3 269,542 + -0.2 269,543 - +0.2 269,543 - +0.0 269,543 - -0.2 269,543 - -0.2 269,543 - -0.5 269,543 - -0.7 269,543 - -0.0 269,543 - +0.1 269,543 - +0.0 269,543 - -0.3 269,543 - +0.0 269,543 - +0.6 269,600 + -0.1 269,600 + -1.0 269,600 + +0.4 269,600 + -0.1 269,601 + +0.9 269,601 - -0.3 269,601 - -0.5 269,603 + -0.7 269,604 - +0.6 269,892 + PfGW456L13_228 0.18 -0.4 269,892 + PfGW456L13_228 0.18 +0.9 269,892 + PfGW456L13_228 0.18 -1.1 269,893 - PfGW456L13_228 0.18 -0.2 269,931 + PfGW456L13_228 0.20 +0.7 269,932 - PfGW456L13_228 0.20 -0.0 269,932 - PfGW456L13_228 0.20 +0.1 269,932 - PfGW456L13_228 0.20 -0.3 269,932 - PfGW456L13_228 0.20 -0.3 269,940 + PfGW456L13_228 0.21 +0.4 269,940 + PfGW456L13_228 0.21 +1.6 269,940 + PfGW456L13_228 0.21 -0.4 269,940 + PfGW456L13_228 0.21 +0.6 269,941 - PfGW456L13_228 0.21 -2.7 269,941 - PfGW456L13_228 0.21 -0.3 269,941 - PfGW456L13_228 0.21 +0.0 269,941 - PfGW456L13_228 0.21 +0.2 269,941 - PfGW456L13_228 0.21 -0.5 269,941 - PfGW456L13_228 0.21 -0.2 269,941 - PfGW456L13_228 0.21 -1.7 269,941 - PfGW456L13_228 0.21 -0.4 269,941 - PfGW456L13_228 0.21 -0.3 269,941 - PfGW456L13_228 0.21 -0.1 269,941 - PfGW456L13_228 0.21 -0.8 269,944 + PfGW456L13_228 0.21 +0.7 269,944 + PfGW456L13_228 0.21 -1.2 269,944 + PfGW456L13_228 0.21 -0.9 269,944 + PfGW456L13_228 0.21 -0.4 269,945 - PfGW456L13_228 0.21 -0.7 269,945 - PfGW456L13_228 0.21 +0.8 269,945 - PfGW456L13_228 0.21 +0.6 269,945 - PfGW456L13_228 0.21 -2.8 270,141 + PfGW456L13_228 0.33 -0.3 270,142 - PfGW456L13_228 0.33 -0.4 270,163 + PfGW456L13_228 0.35 +0.2
Or see this region's nucleotide sequence