Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1565

Experiment: LB control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1564 and PfGW456L13_5188 are separated by 101 nucleotidesPfGW456L13_5188 and PfGW456L13_1565 are separated by 87 nucleotidesPfGW456L13_1565 and PfGW456L13_1566 are separated by 60 nucleotides PfGW456L13_1564 - hypothetical protein, at 1,726,845 to 1,727,954 _1564 PfGW456L13_5188 - tRNA-Met-CAT, at 1,728,056 to 1,728,129 _5188 PfGW456L13_1565 - probable amidase, at 1,728,217 to 1,729,671 _1565 PfGW456L13_1566 - ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1), at 1,729,732 to 1,730,778 _1566 Position (kb) 1728 1729 1730Strain fitness (log2 ratio) -2 -1 0 1 2at 1727.253 kb on + strand, within PfGW456L13_1564at 1727.253 kb on + strand, within PfGW456L13_1564at 1727.253 kb on + strand, within PfGW456L13_1564at 1727.254 kb on - strand, within PfGW456L13_1564at 1727.254 kb on - strand, within PfGW456L13_1564at 1727.254 kb on - strand, within PfGW456L13_1564at 1727.274 kb on + strandat 1727.274 kb on + strand, within PfGW456L13_1564at 1727.274 kb on + strand, within PfGW456L13_1564at 1727.275 kb on - strand, within PfGW456L13_1564at 1727.275 kb on - strand, within PfGW456L13_1564at 1727.275 kb on - strand, within PfGW456L13_1564at 1727.275 kb on - strand, within PfGW456L13_1564at 1727.473 kb on + strand, within PfGW456L13_1564at 1727.473 kb on + strand, within PfGW456L13_1564at 1727.474 kb on - strand, within PfGW456L13_1564at 1727.474 kb on - strand, within PfGW456L13_1564at 1727.474 kb on - strand, within PfGW456L13_1564at 1727.565 kb on + strand, within PfGW456L13_1564at 1727.596 kb on - strand, within PfGW456L13_1564at 1727.673 kb on + strand, within PfGW456L13_1564at 1727.674 kb on - strand, within PfGW456L13_1564at 1727.675 kb on + strand, within PfGW456L13_1564at 1727.675 kb on + strand, within PfGW456L13_1564at 1727.675 kb on + strand, within PfGW456L13_1564at 1727.675 kb on + strand, within PfGW456L13_1564at 1727.675 kb on + strand, within PfGW456L13_1564at 1727.675 kb on + strand, within PfGW456L13_1564at 1727.675 kb on + strand, within PfGW456L13_1564at 1727.676 kb on - strand, within PfGW456L13_1564at 1727.676 kb on - strand, within PfGW456L13_1564at 1727.676 kb on - strand, within PfGW456L13_1564at 1727.710 kb on + strand, within PfGW456L13_1564at 1727.710 kb on + strand, within PfGW456L13_1564at 1727.711 kb on - strand, within PfGW456L13_1564at 1727.745 kb on + strand, within PfGW456L13_1564at 1727.746 kb on - strand, within PfGW456L13_1564at 1727.859 kb on + strandat 1727.860 kb on - strandat 1727.997 kb on + strandat 1728.013 kb on - strandat 1728.026 kb on - strandat 1728.047 kb on - strandat 1728.047 kb on - strandat 1728.272 kb on + strandat 1728.272 kb on + strandat 1728.272 kb on + strandat 1728.272 kb on + strandat 1728.273 kb on - strandat 1728.273 kb on - strandat 1728.273 kb on - strandat 1728.367 kb on + strand, within PfGW456L13_1565at 1728.367 kb on + strand, within PfGW456L13_1565at 1728.367 kb on + strand, within PfGW456L13_1565at 1728.367 kb on + strand, within PfGW456L13_1565at 1728.367 kb on + strand, within PfGW456L13_1565at 1728.367 kb on + strand, within PfGW456L13_1565at 1728.368 kb on - strand, within PfGW456L13_1565at 1728.368 kb on - strand, within PfGW456L13_1565at 1728.428 kb on + strand, within PfGW456L13_1565at 1728.428 kb on + strand, within PfGW456L13_1565at 1728.428 kb on + strand, within PfGW456L13_1565at 1728.429 kb on - strand, within PfGW456L13_1565at 1728.429 kb on - strand, within PfGW456L13_1565at 1728.429 kb on - strand, within PfGW456L13_1565at 1728.429 kb on - strand, within PfGW456L13_1565at 1728.429 kb on - strand, within PfGW456L13_1565at 1728.477 kb on + strand, within PfGW456L13_1565at 1728.477 kb on + strand, within PfGW456L13_1565at 1728.478 kb on - strand, within PfGW456L13_1565at 1728.515 kb on + strand, within PfGW456L13_1565at 1728.515 kb on + strand, within PfGW456L13_1565at 1728.516 kb on - strand, within PfGW456L13_1565at 1728.516 kb on - strand, within PfGW456L13_1565at 1728.522 kb on - strand, within PfGW456L13_1565at 1728.668 kb on + strand, within PfGW456L13_1565at 1728.668 kb on + strand, within PfGW456L13_1565at 1728.668 kb on + strand, within PfGW456L13_1565at 1728.668 kb on + strand, within PfGW456L13_1565at 1728.668 kb on + strand, within PfGW456L13_1565at 1728.668 kb on + strand, within PfGW456L13_1565at 1728.668 kb on + strand, within PfGW456L13_1565at 1728.669 kb on - strand, within PfGW456L13_1565at 1728.669 kb on - strand, within PfGW456L13_1565at 1729.217 kb on + strand, within PfGW456L13_1565at 1729.218 kb on - strand, within PfGW456L13_1565at 1729.249 kb on - strand, within PfGW456L13_1565at 1729.250 kb on + strand, within PfGW456L13_1565at 1729.250 kb on + strand, within PfGW456L13_1565at 1729.250 kb on + strand, within PfGW456L13_1565at 1729.250 kb on + strand, within PfGW456L13_1565at 1729.250 kb on + strand, within PfGW456L13_1565at 1729.250 kb on + strand, within PfGW456L13_1565at 1729.250 kb on + strand, within PfGW456L13_1565at 1729.250 kb on + strand, within PfGW456L13_1565at 1729.250 kb on + strand, within PfGW456L13_1565at 1729.250 kb on + strand, within PfGW456L13_1565at 1729.250 kb on + strand, within PfGW456L13_1565at 1729.250 kb on + strand, within PfGW456L13_1565at 1729.251 kb on - strand, within PfGW456L13_1565at 1729.251 kb on - strand, within PfGW456L13_1565at 1729.251 kb on - strand, within PfGW456L13_1565at 1729.251 kb on - strand, within PfGW456L13_1565at 1729.251 kb on - strand, within PfGW456L13_1565at 1729.281 kb on + strand, within PfGW456L13_1565at 1729.282 kb on - strand, within PfGW456L13_1565at 1729.452 kb on - strand, within PfGW456L13_1565at 1729.568 kb on + strandat 1729.568 kb on + strandat 1729.568 kb on + strandat 1729.568 kb on + strandat 1729.568 kb on + strandat 1729.568 kb on + strandat 1729.568 kb on + strandat 1729.569 kb on - strandat 1729.569 kb on - strandat 1729.569 kb on - strandat 1729.569 kb on - strandat 1729.569 kb on - strandat 1729.660 kb on - strandat 1729.660 kb on - strandat 1729.662 kb on + strandat 1729.662 kb on + strandat 1729.662 kb on + strandat 1729.662 kb on + strandat 1729.663 kb on - strandat 1729.663 kb on - strandat 1729.663 kb on - strandat 1729.801 kb on + strandat 1729.802 kb on - strandat 1730.036 kb on + strand, within PfGW456L13_1566at 1730.036 kb on + strand, within PfGW456L13_1566at 1730.036 kb on + strand, within PfGW456L13_1566at 1730.037 kb on - strand, within PfGW456L13_1566at 1730.037 kb on - strand, within PfGW456L13_1566at 1730.037 kb on - strand, within PfGW456L13_1566at 1730.037 kb on - strand, within PfGW456L13_1566at 1730.037 kb on - strand, within PfGW456L13_1566at 1730.150 kb on + strand, within PfGW456L13_1566at 1730.151 kb on - strand, within PfGW456L13_1566at 1730.240 kb on + strand, within PfGW456L13_1566at 1730.240 kb on + strand, within PfGW456L13_1566at 1730.241 kb on - strand, within PfGW456L13_1566at 1730.318 kb on + strand, within PfGW456L13_1566at 1730.318 kb on + strand, within PfGW456L13_1566at 1730.352 kb on - strand, within PfGW456L13_1566at 1730.368 kb on + strand, within PfGW456L13_1566at 1730.368 kb on + strand, within PfGW456L13_1566at 1730.405 kb on + strand, within PfGW456L13_1566at 1730.406 kb on - strand, within PfGW456L13_1566at 1730.406 kb on - strand, within PfGW456L13_1566at 1730.459 kb on + strand, within PfGW456L13_1566at 1730.460 kb on - strand, within PfGW456L13_1566at 1730.460 kb on - strand, within PfGW456L13_1566at 1730.460 kb on - strand, within PfGW456L13_1566at 1730.462 kb on + strand, within PfGW456L13_1566at 1730.463 kb on - strand, within PfGW456L13_1566at 1730.613 kb on + strand, within PfGW456L13_1566at 1730.613 kb on + strand, within PfGW456L13_1566at 1730.613 kb on + strand, within PfGW456L13_1566at 1730.613 kb on + strand, within PfGW456L13_1566at 1730.614 kb on - strand, within PfGW456L13_1566at 1730.614 kb on - strand, within PfGW456L13_1566at 1730.614 kb on - strand, within PfGW456L13_1566at 1730.614 kb on - strand, within PfGW456L13_1566

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Per-strain Table

Position Strand Gene LocusTag Fraction LB control
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1,727,253 + PfGW456L13_1564 0.37 +0.1
1,727,253 + PfGW456L13_1564 0.37 -0.3
1,727,253 + PfGW456L13_1564 0.37 -0.2
1,727,254 - PfGW456L13_1564 0.37 +0.5
1,727,254 - PfGW456L13_1564 0.37 -1.1
1,727,254 - PfGW456L13_1564 0.37 -1.6
1,727,274 + +0.1
1,727,274 + PfGW456L13_1564 0.39 +0.0
1,727,274 + PfGW456L13_1564 0.39 -0.5
1,727,275 - PfGW456L13_1564 0.39 +0.6
1,727,275 - PfGW456L13_1564 0.39 -0.1
1,727,275 - PfGW456L13_1564 0.39 -0.7
1,727,275 - PfGW456L13_1564 0.39 +0.8
1,727,473 + PfGW456L13_1564 0.57 +0.3
1,727,473 + PfGW456L13_1564 0.57 +1.1
1,727,474 - PfGW456L13_1564 0.57 -1.6
1,727,474 - PfGW456L13_1564 0.57 -0.1
1,727,474 - PfGW456L13_1564 0.57 -1.0
1,727,565 + PfGW456L13_1564 0.65 -0.7
1,727,596 - PfGW456L13_1564 0.68 -0.7
1,727,673 + PfGW456L13_1564 0.75 -0.4
1,727,674 - PfGW456L13_1564 0.75 -0.5
1,727,675 + PfGW456L13_1564 0.75 -1.4
1,727,675 + PfGW456L13_1564 0.75 -0.3
1,727,675 + PfGW456L13_1564 0.75 +0.1
1,727,675 + PfGW456L13_1564 0.75 +0.1
1,727,675 + PfGW456L13_1564 0.75 -0.8
1,727,675 + PfGW456L13_1564 0.75 +0.3
1,727,675 + PfGW456L13_1564 0.75 +0.0
1,727,676 - PfGW456L13_1564 0.75 -0.2
1,727,676 - PfGW456L13_1564 0.75 -0.5
1,727,676 - PfGW456L13_1564 0.75 +0.3
1,727,710 + PfGW456L13_1564 0.78 -1.0
1,727,710 + PfGW456L13_1564 0.78 -2.3
1,727,711 - PfGW456L13_1564 0.78 +0.2
1,727,745 + PfGW456L13_1564 0.81 -1.9
1,727,746 - PfGW456L13_1564 0.81 +0.0
1,727,859 + -1.0
1,727,860 - +0.3
1,727,997 + +0.5
1,728,013 - +1.0
1,728,026 - +0.1
1,728,047 - -0.4
1,728,047 - +0.4
1,728,272 + -0.6
1,728,272 + +0.2
1,728,272 + -0.2
1,728,272 + +0.2
1,728,273 - -0.1
1,728,273 - -0.7
1,728,273 - -0.6
1,728,367 + PfGW456L13_1565 0.10 -1.0
1,728,367 + PfGW456L13_1565 0.10 -0.5
1,728,367 + PfGW456L13_1565 0.10 +0.2
1,728,367 + PfGW456L13_1565 0.10 +0.2
1,728,367 + PfGW456L13_1565 0.10 -0.1
1,728,367 + PfGW456L13_1565 0.10 +0.8
1,728,368 - PfGW456L13_1565 0.10 -0.6
1,728,368 - PfGW456L13_1565 0.10 -0.5
1,728,428 + PfGW456L13_1565 0.15 -0.1
1,728,428 + PfGW456L13_1565 0.15 +0.4
1,728,428 + PfGW456L13_1565 0.15 -0.3
1,728,429 - PfGW456L13_1565 0.15 -1.0
1,728,429 - PfGW456L13_1565 0.15 +0.3
1,728,429 - PfGW456L13_1565 0.15 -0.5
1,728,429 - PfGW456L13_1565 0.15 -0.9
1,728,429 - PfGW456L13_1565 0.15 +0.2
1,728,477 + PfGW456L13_1565 0.18 +0.9
1,728,477 + PfGW456L13_1565 0.18 -0.2
1,728,478 - PfGW456L13_1565 0.18 -0.7
1,728,515 + PfGW456L13_1565 0.20 -0.2
1,728,515 + PfGW456L13_1565 0.20 -0.5
1,728,516 - PfGW456L13_1565 0.21 +0.7
1,728,516 - PfGW456L13_1565 0.21 -0.1
1,728,522 - PfGW456L13_1565 0.21 +0.3
1,728,668 + PfGW456L13_1565 0.31 +0.1
1,728,668 + PfGW456L13_1565 0.31 -0.8
1,728,668 + PfGW456L13_1565 0.31 -0.1
1,728,668 + PfGW456L13_1565 0.31 -0.7
1,728,668 + PfGW456L13_1565 0.31 +0.2
1,728,668 + PfGW456L13_1565 0.31 +0.3
1,728,668 + PfGW456L13_1565 0.31 +0.7
1,728,669 - PfGW456L13_1565 0.31 +1.1
1,728,669 - PfGW456L13_1565 0.31 -0.5
1,729,217 + PfGW456L13_1565 0.69 -0.6
1,729,218 - PfGW456L13_1565 0.69 -1.3
1,729,249 - PfGW456L13_1565 0.71 -0.0
1,729,250 + PfGW456L13_1565 0.71 +0.5
1,729,250 + PfGW456L13_1565 0.71 -0.0
1,729,250 + PfGW456L13_1565 0.71 +0.5
1,729,250 + PfGW456L13_1565 0.71 -0.6
1,729,250 + PfGW456L13_1565 0.71 +0.8
1,729,250 + PfGW456L13_1565 0.71 -0.2
1,729,250 + PfGW456L13_1565 0.71 +0.3
1,729,250 + PfGW456L13_1565 0.71 +0.5
1,729,250 + PfGW456L13_1565 0.71 +0.5
1,729,250 + PfGW456L13_1565 0.71 -1.3
1,729,250 + PfGW456L13_1565 0.71 +0.1
1,729,250 + PfGW456L13_1565 0.71 -0.1
1,729,251 - PfGW456L13_1565 0.71 +0.1
1,729,251 - PfGW456L13_1565 0.71 +0.3
1,729,251 - PfGW456L13_1565 0.71 -0.1
1,729,251 - PfGW456L13_1565 0.71 -0.1
1,729,251 - PfGW456L13_1565 0.71 +0.4
1,729,281 + PfGW456L13_1565 0.73 +1.0
1,729,282 - PfGW456L13_1565 0.73 -0.2
1,729,452 - PfGW456L13_1565 0.85 -0.6
1,729,568 + -0.9
1,729,568 + -1.1
1,729,568 + -0.5
1,729,568 + +0.3
1,729,568 + +0.5
1,729,568 + +0.2
1,729,568 + -1.3
1,729,569 - +0.4
1,729,569 - +0.2
1,729,569 - +0.2
1,729,569 - +0.6
1,729,569 - -0.6
1,729,660 - -0.9
1,729,660 - +1.4
1,729,662 + -0.6
1,729,662 + +0.3
1,729,662 + -0.8
1,729,662 + +0.1
1,729,663 - +0.1
1,729,663 - +0.7
1,729,663 - +0.1
1,729,801 + +0.4
1,729,802 - +0.8
1,730,036 + PfGW456L13_1566 0.29 +0.1
1,730,036 + PfGW456L13_1566 0.29 -1.6
1,730,036 + PfGW456L13_1566 0.29 +0.0
1,730,037 - PfGW456L13_1566 0.29 +0.3
1,730,037 - PfGW456L13_1566 0.29 -0.3
1,730,037 - PfGW456L13_1566 0.29 +2.5
1,730,037 - PfGW456L13_1566 0.29 -1.1
1,730,037 - PfGW456L13_1566 0.29 -0.8
1,730,150 + PfGW456L13_1566 0.40 -1.0
1,730,151 - PfGW456L13_1566 0.40 -1.9
1,730,240 + PfGW456L13_1566 0.49 +0.0
1,730,240 + PfGW456L13_1566 0.49 +0.2
1,730,241 - PfGW456L13_1566 0.49 +0.4
1,730,318 + PfGW456L13_1566 0.56 +0.3
1,730,318 + PfGW456L13_1566 0.56 +0.4
1,730,352 - PfGW456L13_1566 0.59 -0.3
1,730,368 + PfGW456L13_1566 0.61 +1.4
1,730,368 + PfGW456L13_1566 0.61 -0.9
1,730,405 + PfGW456L13_1566 0.64 -0.4
1,730,406 - PfGW456L13_1566 0.64 +1.9
1,730,406 - PfGW456L13_1566 0.64 -0.1
1,730,459 + PfGW456L13_1566 0.69 +0.1
1,730,460 - PfGW456L13_1566 0.70 +0.4
1,730,460 - PfGW456L13_1566 0.70 +1.4
1,730,460 - PfGW456L13_1566 0.70 +0.1
1,730,462 + PfGW456L13_1566 0.70 -0.0
1,730,463 - PfGW456L13_1566 0.70 -0.3
1,730,613 + PfGW456L13_1566 0.84 +0.3
1,730,613 + PfGW456L13_1566 0.84 -0.6
1,730,613 + PfGW456L13_1566 0.84 +0.8
1,730,613 + PfGW456L13_1566 0.84 +0.3
1,730,614 - PfGW456L13_1566 0.84 +0.4
1,730,614 - PfGW456L13_1566 0.84 -0.3
1,730,614 - PfGW456L13_1566 0.84 +0.5
1,730,614 - PfGW456L13_1566 0.84 +0.1

Or see this region's nucleotide sequence