Strain Fitness in Pseudomonas putida KT2440 around PP_5273

Experiment: BC Lignin Sorghum 10 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BC Lignin Sorghum 10 vol% (C)
6,020,804	+				+1.4
6,020,804	+				-0.4
6,020,865	-		PP_5271	0.12	-2.0
6,020,886	-		PP_5271	0.17	+0.2
6,020,886	-		PP_5271	0.17	-0.9
6,020,937	-		PP_5271	0.27	-0.1
6,020,982	+		PP_5271	0.36	-1.0
6,020,982	+		PP_5271	0.36	-1.1
6,020,983	-		PP_5271	0.36	-2.0
6,020,983	-		PP_5271	0.36	-1.7
6,021,145	-				+0.5
6,021,161	+		PP_5271	0.73	+0.5
6,021,162	-		PP_5271	0.73	+0.5
6,021,240	+		PP_5271	0.89	+1.1
6,021,240	+		PP_5271	0.89	-0.6
6,021,240	+		PP_5271	0.89	-0.3
6,021,240	+		PP_5271	0.89	-1.5
6,021,241	-		PP_5271	0.89	-0.3
6,021,241	-		PP_5271	0.89	-0.4
6,021,241	-		PP_5271	0.89	-0.4
6,021,409	+		PP_5272	0.32	+0.6
6,021,444	+		PP_5272	0.42	+0.2
6,021,444	+		PP_5272	0.42	-1.3
6,021,444	+		PP_5272	0.42	+0.6
6,021,444	+		PP_5272	0.42	-0.0
6,021,445	-		PP_5272	0.42	+0.5
6,021,445	-		PP_5272	0.42	+0.3
6,021,445	-		PP_5272	0.42	+0.5
6,021,445	-		PP_5272	0.42	+0.0
6,021,553	+		PP_5272	0.73	+0.6
6,021,657	+				+0.2
6,021,681	+				+0.1
6,021,683	+				+0.9
6,021,684	-				-1.4
6,021,684	-				-0.2
6,021,689	+				-0.3
6,021,689	+				+0.5
6,021,690	-				+0.3
6,021,690	-				+0.2
6,021,715	+				-3.1
6,021,716	-				+1.6
6,021,756	+				-0.3
6,021,757	-				+0.6
6,021,757	-				-0.4
6,021,823	+				-2.8
6,021,823	+				+0.9
6,021,824	-				-1.6
6,021,824	-				-0.8
6,021,824	-				+0.9
6,021,824	-				+0.9
6,021,824	-				+0.7
6,021,862	+				-1.2
6,021,862	+				+1.3
6,022,112	+		PP_5273	0.25	+0.7
6,022,112	+		PP_5273	0.25	-0.5
6,022,112	+		PP_5273	0.25	-0.5
6,022,112	+		PP_5273	0.25	-1.5
6,022,113	-		PP_5273	0.25	+2.0
6,022,147	-		PP_5273	0.27	-2.5
6,022,147	-		PP_5273	0.27	-0.5
6,022,147	-		PP_5273	0.27	+0.1
6,022,247	-		PP_5273	0.35	-1.8
6,022,309	+		PP_5273	0.40	-1.0
6,022,309	+		PP_5273	0.40	+0.1
6,022,309	+		PP_5273	0.40	-0.9
6,022,309	+		PP_5273	0.40	+0.2
6,022,309	+		PP_5273	0.40	+0.0
6,022,309	+		PP_5273	0.40	-1.8
6,022,309	+		PP_5273	0.40	+0.3
6,022,309	+		PP_5273	0.40	-0.2
6,022,309	+		PP_5273	0.40	-2.3
6,022,309	+		PP_5273	0.40	+0.4
6,022,309	+		PP_5273	0.40	-0.8
6,022,310	-		PP_5273	0.40	-1.5
6,022,310	-		PP_5273	0.40	-1.9
6,022,310	-		PP_5273	0.40	-0.3
6,022,310	-		PP_5273	0.40	+1.8
6,022,439	-		PP_5273	0.50	-0.8
6,022,461	+		PP_5273	0.52	+0.5
6,022,461	+		PP_5273	0.52	-1.1
6,022,461	+		PP_5273	0.52	-0.6
6,022,462	-		PP_5273	0.52	-1.0
6,022,496	+		PP_5273	0.54	+0.9
6,022,513	+		PP_5273	0.56	-0.2
6,022,567	+		PP_5273	0.60	+0.5
6,022,568	-		PP_5273	0.60	+0.6
6,022,568	-		PP_5273	0.60	+1.2
6,022,626	+		PP_5273	0.64	-0.7
6,022,626	+		PP_5273	0.64	-0.2
6,022,660	+		PP_5273	0.67	-4.1
6,022,661	-		PP_5273	0.67	+1.3
6,022,663	+		PP_5273	0.67	-1.6
6,022,663	+		PP_5273	0.67	+0.9
6,022,664	-		PP_5273	0.67	-0.1
6,022,664	-		PP_5273	0.67	-1.2
6,022,712	-		PP_5273	0.71	-1.7
6,022,745	-		PP_5273	0.74	-0.3
6,022,802	-		PP_5273	0.78	-0.0
6,022,802	-		PP_5273	0.78	-1.2
6,022,880	-		PP_5273	0.84	-0.7
6,022,880	-		PP_5273	0.84	-0.5
6,022,883	-		PP_5273	0.84	+0.3
6,022,894	+		PP_5273	0.85	-0.5
6,022,894	+		PP_5273	0.85	-0.8
6,023,120	+				-0.1
6,023,121	-				+0.4
6,023,121	-				-0.1
6,023,333	+		PP_5274	0.32	-0.5
6,023,485	-		PP_5274	0.79	-0.5
6,023,485	-		PP_5274	0.79	-2.5
6,023,522	+				+0.0
6,023,522	+				+0.3
6,023,523	-				+0.2
6,023,523	-				-0.5
6,023,523	-				+1.0
6,023,533	+				+0.2
6,023,533	+				+1.8
6,023,534	-				-1.1
6,023,541	+				+0.3
6,023,542	-				+0.4
6,023,542	-				+0.7
6,023,544	+				-0.4
6,023,545	-				+0.5
6,023,633	-				-0.0
6,023,667	-				-0.3
6,023,696	-				-1.1
6,023,776	+		PP_5275	0.13	+0.5
6,023,799	+		PP_5275	0.15	-0.8
6,023,800	-				-0.5
6,024,058	+		PP_5275	0.32	-0.3
6,024,058	+				-0.3
6,024,061	+		PP_5275	0.32	-0.7
6,024,061	+		PP_5275	0.32	+0.2
6,024,061	+		PP_5275	0.32	+0.5
6,024,061	+		PP_5275	0.32	+0.3
6,024,061	+		PP_5275	0.32	+0.8
6,024,079	-		PP_5275	0.34	+0.8