Strain Fitness in Pseudomonas putida KT2440 around PP_4103

Experiment: BC Lignin Sorghum 10 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BC Lignin Sorghum 10 vol% (C)
4,636,285	+				+0.1
4,636,285	+				+0.4
4,636,286	-				-0.8
4,636,321	+				-0.2
4,636,322	-				-0.7
4,636,322	-				+0.4
4,636,322	-				-0.9
4,636,328	+				-0.1
4,636,328	+				-0.4
4,636,329	-				-0.6
4,636,329	-				-0.7
4,636,329	-				-1.5
4,636,329	-				+0.5
4,636,336	+				+0.5
4,636,336	+				-0.2
4,636,337	-				-1.7
4,636,352	+				+0.1
4,636,353	-				+0.8
4,636,398	+		PP_4101	0.18	-0.1
4,636,601	+		PP_4101	0.64	-0.0
4,636,601	+		PP_4101	0.64	+0.5
4,636,602	-		PP_4101	0.64	-1.0
4,636,602	-		PP_4101	0.64	+0.8
4,636,602	-		PP_4101	0.64	-1.9
4,636,602	-		PP_4101	0.64	-1.2
4,636,602	-		PP_4101	0.64	-0.8
4,636,678	-		PP_4101	0.82	+0.8
4,636,678	-		PP_4101	0.82	-1.5
4,636,702	+		PP_4101	0.87	+0.1
4,636,751	+				-0.2
4,636,751	+				+1.2
4,636,751	+				-0.0
4,636,752	-				+0.4
4,636,752	-				+1.5
4,636,752	-				-0.9
4,636,780	+				+0.2
4,636,781	-				+0.9
4,636,880	-		PP_4102	0.28	+0.0
4,636,880	-		PP_4102	0.28	+0.4
4,636,925	-		PP_4102	0.40	-1.8
4,637,009	+		PP_4102	0.62	+0.9
4,637,101	-		PP_4102	0.86	+1.9
4,637,101	-		PP_4102	0.86	-0.6
4,637,134	+				-0.0
4,637,134	+				-1.1
4,637,134	+				-0.2
4,637,134	+				-0.1
4,637,135	-				+0.5
4,637,173	+				-0.8
4,637,174	-				-0.3
4,637,195	+				+0.2
4,637,196	-				-1.3
4,637,196	-				+0.8
4,637,236	-				+0.1
4,637,237	+				+1.0
4,637,316	+				-1.6
4,637,374	-				-1.0
4,637,374	-				-1.3
4,637,412	-				+0.5
4,637,568	+		PP_4103	0.18	-0.1
4,637,568	+		PP_4103	0.18	-0.9
4,637,568	+		PP_4103	0.18	-0.1
4,637,569	-		PP_4103	0.18	-0.8
4,637,569	-		PP_4103	0.18	-0.3
4,637,570	+		PP_4103	0.18	-0.4
4,637,570	+		PP_4103	0.18	+0.1
4,637,571	-		PP_4103	0.18	-1.6
4,637,571	-		PP_4103	0.18	-0.8
4,637,571	-		PP_4103	0.18	-0.1
4,637,571	-		PP_4103	0.18	-3.1
4,637,571	-		PP_4103	0.18	-0.1
4,637,571	-		PP_4103	0.18	-1.2
4,637,571	-		PP_4103	0.18	-0.1
4,637,685	+		PP_4103	0.25	-1.0
4,637,686	-		PP_4103	0.25	-0.5
4,637,697	+		PP_4103	0.25	-0.0
4,637,697	+		PP_4103	0.25	-0.3
4,637,698	-				-0.0
4,637,698	-		PP_4103	0.26	+0.2
4,637,909	+		PP_4103	0.39	-0.4
4,637,910	-		PP_4103	0.39	-0.3
4,637,999	+		PP_4103	0.44	+0.2
4,638,000	-		PP_4103	0.44	-0.6
4,638,048	+		PP_4103	0.47	-0.3
4,638,048	+		PP_4103	0.47	-0.7
4,638,155	+		PP_4103	0.54	+0.1
4,638,276	+		PP_4103	0.61	-0.2
4,638,276	+		PP_4103	0.61	+0.2
4,638,276	+		PP_4103	0.61	+1.0
4,638,276	+		PP_4103	0.61	+0.0
4,638,276	+		PP_4103	0.61	+1.0
4,638,276	+		PP_4103	0.61	-0.4
4,638,277	-		PP_4103	0.61	-1.2
4,638,277	-		PP_4103	0.61	-1.4
4,638,372	-		PP_4103	0.67	-0.7
4,638,428	+		PP_4103	0.71	-0.5
4,638,428	+		PP_4103	0.71	-0.9
4,638,428	+		PP_4103	0.71	-1.1
4,638,428	+		PP_4103	0.71	-0.6
4,638,428	+		PP_4103	0.71	-0.6
4,638,428	+		PP_4103	0.71	-0.4
4,638,428	+		PP_4103	0.71	-0.5
4,638,428	+		PP_4103	0.71	-0.2
4,638,429	-		PP_4103	0.71	+0.1
4,638,429	-		PP_4103	0.71	+0.5
4,638,429	-		PP_4103	0.71	+0.1
4,638,429	-		PP_4103	0.71	-0.2
4,638,429	-		PP_4103	0.71	-0.5
4,638,429	-		PP_4103	0.71	+0.4
4,638,429	-		PP_4103	0.71	-1.3
4,638,429	-		PP_4103	0.71	-0.5
4,638,429	-		PP_4103	0.71	+0.2
4,638,429	-		PP_4103	0.71	-0.0
4,638,542	+		PP_4103	0.78	+0.4
4,638,542	+		PP_4103	0.78	-0.5
4,638,543	-		PP_4103	0.78	+0.0
4,638,544	+		PP_4103	0.78	+0.7
4,638,544	+		PP_4103	0.78	+0.0
4,638,545	-		PP_4103	0.78	-0.5
4,638,571	-		PP_4103	0.80	-0.6
4,638,614	-		PP_4103	0.82	-0.4
4,638,614	-		PP_4103	0.82	-0.2
4,638,614	-		PP_4103	0.82	-0.3
4,638,614	-		PP_4103	0.82	+0.6
4,638,618	+		PP_4103	0.82	-0.6
4,638,619	-		PP_4103	0.82	-1.0
4,638,619	-		PP_4103	0.82	-0.5
4,638,619	-		PP_4103	0.82	+0.7
4,638,659	+		PP_4103	0.85	-0.5
4,638,659	+		PP_4103	0.85	-3.5
4,638,659	+		PP_4103	0.85	-0.5
4,638,660	-		PP_4103	0.85	-1.2
4,638,715	+		PP_4103	0.88	-0.4
4,638,715	+		PP_4103	0.88	+1.1
4,638,715	+		PP_4103	0.88	+1.5
4,638,715	+		PP_4103	0.88	-1.3
4,638,875	+				-0.3
4,638,922	-				+0.6
4,639,070	+				+0.1
4,639,071	-				+0.4
4,639,191	+		PP_4104	0.16	-1.1
4,639,192	-		PP_4104	0.16	+0.4
4,639,192	-		PP_4104	0.16	+0.6
4,639,245	+		PP_4104	0.23	+0.4
4,639,245	+		PP_4104	0.23	-0.1
4,639,246	-		PP_4104	0.24	+0.5
4,639,246	-		PP_4104	0.24	+0.3
4,639,320	+		PP_4104	0.34	+0.7
4,639,320	+		PP_4104	0.34	-0.3
4,639,348	-		PP_4104	0.38	+0.4
4,639,348	-		PP_4104	0.38	+0.3
4,639,491	+		PP_4104	0.59	-0.9
4,639,707	+		PP_4104	0.90	-0.3
4,639,812	+				-0.4
4,639,812	+				-0.2