Strain Fitness in Pseudomonas putida KT2440 around PP_3567

Experiment: BC Lignin Sorghum 10 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BC Lignin Sorghum 10 vol% (C)
4,044,899	-		PP_3566	0.33	+0.5
4,044,899	-		PP_3566	0.33	+0.2
4,044,992	+		PP_3566	0.40	+0.0
4,045,025	+		PP_3566	0.43	-0.3
4,045,094	+		PP_3566	0.49	+0.3
4,045,094	+		PP_3566	0.49	+0.7
4,045,094	+		PP_3566	0.49	+1.3
4,045,094	+		PP_3566	0.49	-1.3
4,045,095	-		PP_3566	0.49	+0.2
4,045,095	-		PP_3566	0.49	-0.4
4,045,095	-		PP_3566	0.49	-0.3
4,045,095	-		PP_3566	0.49	-0.5
4,045,269	+		PP_3566	0.63	-0.8
4,045,418	-		PP_3566	0.76	-0.6
4,045,418	-		PP_3566	0.76	-2.0
4,045,496	-		PP_3566	0.82	-0.2
4,045,511	+		PP_3566	0.84	+0.8
4,045,511	+		PP_3566	0.84	-1.2
4,045,604	+				-0.8
4,045,604	+				-0.3
4,045,605	-				+0.0
4,045,649	-				+0.1
4,045,697	+				-0.9
4,045,733	+				-0.5
4,045,734	-				-2.7
4,045,734	-				+0.8
4,045,734	-				+0.6
4,045,735	+				-0.5
4,045,736	-				-1.2
4,045,736	-				+0.1
4,045,750	-				+1.3
4,045,815	+				+0.3
4,045,815	+				-0.3
4,045,891	+				-1.3
4,045,891	+				+0.7
4,045,891	+				+0.4
4,045,892	-				-0.1
4,045,892	-				-0.6
4,045,892	-				+0.9
4,045,893	+				-0.2
4,045,893	+				-0.6
4,045,893	+				+0.7
4,045,893	+				+0.8
4,045,893	+				+0.9
4,045,893	+				+0.6
4,045,893	+				-1.1
4,045,893	+				+0.7
4,045,893	+				+0.2
4,045,893	+				+1.1
4,045,893	+				-1.8
4,045,894	-				+0.2
4,045,894	-				+0.3
4,045,894	-				+0.0
4,045,894	-				+1.0
4,045,894	-				+0.3
4,045,894	-				+0.6
4,045,912	+		PP_3567	0.11	+0.7
4,045,912	+		PP_3567	0.11	+0.6
4,045,912	+		PP_3567	0.11	+0.3
4,045,950	-		PP_3567	0.15	-1.1
4,046,075	+		PP_3567	0.29	-0.3
4,046,075	+		PP_3567	0.29	-0.7
4,046,075	+		PP_3567	0.29	+0.1
4,046,075	+		PP_3567	0.29	-0.5
4,046,076	-		PP_3567	0.29	+1.4
4,046,076	-		PP_3567	0.29	-1.3
4,046,205	+		PP_3567	0.43	+0.0
4,046,523	+		PP_3567	0.78	+1.3
4,046,523	+		PP_3567	0.78	-0.2
4,046,524	-		PP_3567	0.78	-0.1
4,046,643	-				+0.4
4,046,803	+				+0.7
4,046,833	+				+1.5
4,046,833	+				+0.4
4,046,833	+				+0.6
4,046,834	-				-1.2
4,046,834	-				-1.3
4,047,158	+				+1.0
4,047,158	+				+0.5
4,047,158	+				+0.9
4,047,158	+				-1.7
4,047,158	+				+0.4
4,047,158	+				-1.6
4,047,159	-				-0.4
4,047,159	-				-0.2
4,047,249	-				+0.6
4,047,249	-				+0.5
4,047,249	-				+0.1
4,047,266	-				+0.9
4,047,285	+				+0.5
4,047,318	+				-0.5
4,047,318	+				-0.1
4,047,318	+				+0.1
4,047,319	-				-1.1
4,047,319	-				-0.3
4,047,319	-				+0.2
4,047,322	+				+0.4
4,047,322	+				-0.7
4,047,324	+				-0.3
4,047,344	+				-0.6
4,047,658	-				+0.1
4,047,677	+				-1.1
4,047,678	-				+1.0