Strain Fitness in Pseudomonas putida KT2440 around PP_3491

Experiment: BC Lignin Sorghum 10 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BC Lignin Sorghum 10 vol% (C)
3,959,752	-		PP_3490	0.89	-0.2
3,959,804	+				-0.2
3,959,854	-				-2.9
3,959,855	+				-0.4
3,959,856	-				-0.0
3,959,866	-				+0.7
3,960,039	-				+0.2
3,960,100	-				-0.6
3,960,343	+				+0.8
3,960,344	-				+1.4
3,960,344	-				-1.9
3,960,464	+				-0.6
3,960,693	-				-0.5
3,960,753	+				+1.1
3,960,754	-				+0.7
3,960,883	-		PP_3491	0.16	+0.2
3,960,883	-		PP_3491	0.16	+0.0
3,960,951	-		PP_3491	0.22	+0.0
3,961,004	+		PP_3491	0.27	-1.1
3,961,005	-		PP_3491	0.27	+0.6
3,961,044	+		PP_3491	0.31	+0.2
3,961,044	+		PP_3491	0.31	+0.4
3,961,045	-		PP_3491	0.31	+1.0
3,961,045	-		PP_3491	0.31	-0.5
3,961,160	+		PP_3491	0.42	+0.7
3,961,161	-		PP_3491	0.42	-0.7
3,961,184	+		PP_3491	0.44	-0.2
3,961,184	+		PP_3491	0.44	-1.1
3,961,185	-		PP_3491	0.44	+0.5
3,961,185	-		PP_3491	0.44	+1.0
3,961,185	-		PP_3491	0.44	+0.4
3,961,220	+		PP_3491	0.47	-0.0
3,961,220	+		PP_3491	0.47	-0.7
3,961,220	+		PP_3491	0.47	-0.5
3,961,221	-		PP_3491	0.47	-0.5
3,961,265	+		PP_3491	0.51	-0.2
3,961,266	-		PP_3491	0.51	-2.2
3,961,266	-		PP_3491	0.51	+1.2
3,961,286	+		PP_3491	0.53	-0.3
3,961,286	+		PP_3491	0.53	-1.2
3,961,287	-		PP_3491	0.53	+0.4
3,961,796	+				+0.8
3,961,797	-				+0.5
3,961,992	+		PP_3492	0.16	-0.7
3,961,993	-		PP_3492	0.16	-2.4
3,962,001	+		PP_3492	0.17	-0.9
3,962,001	+		PP_3492	0.17	-1.2
3,962,002	-		PP_3492	0.17	-0.7
3,962,011	-		PP_3492	0.18	-1.1
3,962,011	-		PP_3492	0.18	+0.2
3,962,011	-		PP_3492	0.18	-0.1
3,962,084	-		PP_3492	0.24	-0.1
3,962,106	+		PP_3492	0.26	+0.3
3,962,107	-		PP_3492	0.26	+1.0
3,962,611	+		PP_3492	0.70	-0.8