Strain Fitness in Pseudomonas putida KT2440 around PP_3378

Experiment: BC Lignin Sorghum 10 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BC Lignin Sorghum 10 vol% (C)
3,822,246	+		PP_3377	0.27	-0.4
3,822,246	+		PP_3377	0.27	+0.0
3,822,246	+		PP_3377	0.27	+0.7
3,822,246	+		PP_3377	0.27	-0.6
3,822,247	-		PP_3377	0.28	-1.3
3,822,247	-		PP_3377	0.28	-0.5
3,822,247	-		PP_3377	0.28	+0.8
3,822,247	-		PP_3377	0.28	-0.4
3,822,441	+		PP_3377	0.43	+1.1
3,822,442	-		PP_3377	0.43	+1.2
3,822,466	-		PP_3377	0.44	-0.1
3,822,466	-		PP_3377	0.44	+0.8
3,822,466	-		PP_3377	0.44	-0.6
3,822,513	+		PP_3377	0.48	-1.6
3,822,513	+		PP_3377	0.48	+0.8
3,822,514	-		PP_3377	0.48	-0.3
3,822,521	+		PP_3377	0.49	+0.3
3,822,521	+		PP_3377	0.49	+0.4
3,822,522	-		PP_3377	0.49	+0.0
3,822,533	-		PP_3377	0.50	+1.5
3,822,533	-		PP_3377	0.50	+0.5
3,822,691	-		PP_3377	0.62	+0.4
3,822,691	-		PP_3377	0.62	-1.5
3,822,807	+				+1.4
3,822,807	+		PP_3377	0.71	+0.3
3,822,808	-		PP_3377	0.71	-0.6
3,822,876	+		PP_3377	0.76	-1.3
3,822,877	-		PP_3377	0.76	+0.4
3,822,946	-		PP_3377	0.82	+0.7
3,822,969	+		PP_3377	0.83	+1.2
3,822,970	-		PP_3377	0.83	-0.0
3,822,970	-		PP_3377	0.83	-0.1
3,823,089	+				-0.2
3,823,090	-				-1.2
3,823,146	+				-0.3
3,823,146	+				+0.4
3,823,147	-				-0.0
3,823,147	-				+0.5
3,823,147	-				-0.4
3,823,147	-				+1.0
3,823,147	-				+1.0
3,823,261	+				-0.9
3,823,262	-				-0.3
3,823,262	-				+0.2
3,823,931	-		PP_3378	0.73	-1.8
3,823,931	-		PP_3378	0.73	-2.6
3,824,408	+		PP_3379	0.29	+0.7
3,824,409	-		PP_3379	0.29	-1.1
3,825,142	+		PP_3380	0.11	-0.5