Strain Fitness in Pseudomonas putida KT2440 around PP_3348

Experiment: BC Lignin Sorghum 10 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BC Lignin Sorghum 10 vol% (C)
3,784,325	+		PP_3346	0.79	-0.5
3,784,326	-		PP_3346	0.79	-1.4
3,784,536	+				+0.3
3,784,536	+				-0.0
3,784,537	-				-0.6
3,784,537	-				-0.7
3,784,537	-				-0.2
3,784,537	-				+0.0
3,784,537	-				-0.7
3,784,842	+				-2.0
3,784,842	+				+0.8
3,784,843	-				+0.1
3,784,843	-				+0.6
3,784,843	-				+0.4
3,784,846	+				-0.6
3,784,846	+				+0.0
3,784,846	+				+0.2
3,785,025	+		PP_3348	0.19	-0.6
3,785,211	+		PP_3348	0.35	+0.9
3,785,211	+		PP_3348	0.35	+0.1
3,785,212	-		PP_3348	0.35	-0.1
3,785,212	-		PP_3348	0.35	-0.1
3,785,528	+		PP_3348	0.63	-1.6
3,785,528	+		PP_3348	0.63	-0.5
3,785,803	+		PP_3348	0.87	+0.2
3,785,803	+		PP_3348	0.87	+0.4
3,785,803	+		PP_3348	0.87	-1.9
3,785,804	-		PP_3348	0.87	-0.9
3,785,804	-		PP_3348	0.87	+0.4
3,785,809	+		PP_3348	0.88	+0.1
3,785,875	-				+0.5
3,785,875	-				-0.9
3,785,949	+				-0.5
3,785,949	+				+1.3
3,785,950	-				-0.7
3,785,968	+				+0.1
3,785,968	+				-1.0
3,785,969	-				-0.3
3,786,034	-				-0.3
3,786,208	+		PP_3349	0.19	+0.4
3,786,229	+		PP_3349	0.21	+0.5
3,786,230	-		PP_3349	0.21	+0.3
3,786,508	+		PP_3349	0.44	+0.2
3,786,508	+		PP_3349	0.44	-0.6
3,786,508	+		PP_3349	0.44	-2.3
3,786,508	+		PP_3349	0.44	+0.0
3,786,508	+		PP_3349	0.44	+0.2
3,786,508	+		PP_3349	0.44	-1.8
3,786,509	-		PP_3349	0.44	-0.3
3,786,701	-		PP_3349	0.59	-0.7
3,786,701	-		PP_3349	0.59	-0.2
3,786,710	+				+0.1
3,786,710	+		PP_3349	0.60	+1.1
3,786,781	+		PP_3349	0.66	-1.9
3,786,782	-		PP_3349	0.66	-0.3
3,786,782	-		PP_3349	0.66	-0.1
3,786,907	+		PP_3349	0.76	+0.6
3,786,908	-		PP_3349	0.76	+1.2
3,786,930	+		PP_3349	0.78	+0.6