Strain Fitness in Pseudomonas putida KT2440 around PP_3346

Experiment: BC Lignin Sorghum 10 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BC Lignin Sorghum 10 vol% (C)
3,783,073	+		PP_3345	0.21	+0.1
3,783,718	+				+0.5
3,783,718	+				-0.3
3,783,757	-				-0.1
3,784,325	+		PP_3346	0.79	-0.5
3,784,326	-		PP_3346	0.79	-1.4
3,784,536	+				+0.3
3,784,536	+				-0.0
3,784,537	-				-0.6
3,784,537	-				-0.7
3,784,537	-				-0.2
3,784,537	-				+0.0
3,784,537	-				-0.7
3,784,842	+				-2.0
3,784,842	+				+0.8
3,784,843	-				+0.1
3,784,843	-				+0.6
3,784,843	-				+0.4
3,784,846	+				-0.6
3,784,846	+				+0.0
3,784,846	+				+0.2
3,785,025	+		PP_3348	0.19	-0.6
3,785,211	+		PP_3348	0.35	+0.9
3,785,211	+		PP_3348	0.35	+0.1
3,785,212	-		PP_3348	0.35	-0.1
3,785,212	-		PP_3348	0.35	-0.1