Strain Fitness in Pseudomonas putida KT2440 around PP_2105

Experiment: BC Lignin Sorghum 10 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BC Lignin Sorghum 10 vol% (C)
2,401,839	+				-1.2
2,401,840	-				-0.6
2,401,923	-				-0.1
2,401,979	+				-1.4
2,401,980	-				+1.9
2,402,070	+		PP_2103	0.10	+0.0
2,402,100	+		PP_2103	0.19	+0.2
2,402,100	+		PP_2103	0.19	-1.0
2,402,128	-		PP_2103	0.28	+0.2
2,402,211	+		PP_2103	0.53	+0.2
2,402,211	+		PP_2103	0.53	+0.0
2,402,463	+		PP_2104	0.27	-0.3
2,402,464	-		PP_2104	0.27	+0.6
2,402,481	+		PP_2104	0.31	-2.8
2,402,481	+		PP_2104	0.31	-0.6
2,402,481	+		PP_2104	0.31	+0.7
2,402,481	+		PP_2104	0.31	+0.4
2,402,481	+		PP_2104	0.31	-0.0
2,402,482	-		PP_2104	0.32	-0.9
2,402,482	-		PP_2104	0.32	-1.8
2,402,482	-		PP_2104	0.32	+0.6
2,402,503	+		PP_2104	0.37	-0.4
2,402,504	-		PP_2104	0.38	+0.9
2,402,829	+		PP_2105	0.26	-0.6
2,402,829	+		PP_2105	0.26	-0.8
2,402,830	-		PP_2105	0.26	-0.9
2,403,026	+		PP_2105	0.89	-0.9
2,403,027	-		PP_2105	0.89	-2.2
2,403,027	-		PP_2105	0.89	-0.3
2,403,089	+				-0.2
2,403,089	+				+0.4
2,403,090	-				-0.1
2,403,294	+				-0.1
2,403,368	+				+0.2
2,403,369	-				-0.8
2,403,574	+		PP_2106	0.17	-1.1
2,403,576	+		PP_2106	0.17	-0.8
2,403,576	+		PP_2106	0.17	-0.3
2,403,576	+		PP_2106	0.17	-0.6
2,403,577	-		PP_2106	0.17	+0.3
2,403,593	+		PP_2106	0.18	-0.2
2,403,808	+		PP_2106	0.36	+1.2
2,403,808	+		PP_2106	0.36	-0.6
2,403,820	-		PP_2106	0.37	-0.3
2,403,883	-		PP_2106	0.42	-0.7