Strain Fitness in Pseudomonas putida KT2440 around PP_1030

Experiment: BC Lignin Sorghum 10 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BC Lignin Sorghum 10 vol% (C)
1,173,946	+				-0.1
1,173,946	+				-1.8
1,173,947	-				+1.4
1,174,063	+				+0.0
1,174,063	+				-0.0
1,174,066	+				-1.3
1,174,066	+				-1.5
1,174,090	+				+0.4
1,174,189	+				+2.0
1,174,189	+				+0.0
1,174,190	-				-0.6
1,174,190	-				+1.0
1,174,219	-		PP_1029	0.13	-2.0
1,174,389	+		PP_1029	0.35	-0.6
1,174,390	-		PP_1029	0.35	+1.0
1,174,390	-		PP_1029	0.35	+0.5
1,174,390	-		PP_1029	0.35	+0.6
1,174,465	+		PP_1029	0.45	+0.7
1,174,466	-		PP_1029	0.45	+0.1
1,174,466	-		PP_1029	0.45	+0.2
1,174,474	+		PP_1029	0.46	-0.3
1,174,585	+		PP_1029	0.61	-0.1
1,174,595	-		PP_1029	0.62	+0.1
1,174,629	-		PP_1029	0.67	+0.1
1,174,629	-		PP_1029	0.67	+0.3
1,174,629	-		PP_1029	0.67	-0.8
1,174,662	+		PP_1029	0.71	+0.7
1,174,663	-		PP_1029	0.71	-1.5
1,174,668	-		PP_1029	0.72	-0.0
1,174,702	+		PP_1029	0.77	-0.4
1,174,703	-		PP_1029	0.77	-1.0
1,174,703	-		PP_1029	0.77	+0.4
1,174,864	+				+0.3
1,175,175	+		PP_1030	0.45	+0.6
1,175,175	+		PP_1030	0.45	+0.8
1,175,175	+		PP_1030	0.45	-0.2
1,175,175	+		PP_1030	0.45	+1.0
1,175,175	+		PP_1030	0.45	-1.3
1,175,175	+		PP_1030	0.45	-0.5
1,175,175	+		PP_1030	0.45	+0.1
1,175,176	-		PP_1030	0.45	+0.7
1,175,176	-		PP_1030	0.45	-0.8
1,175,176	-		PP_1030	0.45	+0.6
1,175,176	-		PP_1030	0.45	-0.1
1,175,176	-		PP_1030	0.45	+0.4
1,175,178	-		PP_1030	0.45	+0.2
1,175,292	-		PP_1030	0.66	-0.7
1,175,292	-		PP_1030	0.66	-0.3
1,175,292	-		PP_1030	0.66	+1.3
1,175,292	-		PP_1030	0.66	-0.1
1,175,337	+		PP_1030	0.74	-0.3
1,175,338	-		PP_1030	0.74	+0.1
1,175,465	-				+0.1
1,175,495	+				-0.1