Strain Fitness in Pseudomonas putida KT2440 around PP_0892

Experiment: BC Lignin Sorghum 10 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BC Lignin Sorghum 10 vol% (C)
1,032,984	+				+0.5
1,032,984	+				-0.4
1,032,985	-				-0.6
1,033,079	+		PP_0890	0.13	-0.3
1,033,125	+		PP_0890	0.29	+0.6
1,033,125	+		PP_0890	0.29	-1.2
1,033,126	-		PP_0890	0.29	+1.1
1,033,151	+		PP_0890	0.37	+0.8
1,033,151	+		PP_0890	0.37	-0.6
1,033,151	+		PP_0890	0.37	+1.2
1,033,152	-		PP_0890	0.38	-0.2
1,033,152	-		PP_0890	0.38	-0.2
1,033,152	-		PP_0890	0.38	+0.5
1,033,190	+		PP_0890	0.51	-0.6
1,033,191	-		PP_0890	0.51	+0.1
1,033,191	-		PP_0890	0.51	+0.9
1,033,202	+		PP_0890	0.55	+1.0
1,033,203	-		PP_0890	0.55	+0.3
1,033,349	-				+0.4
1,033,412	+				+0.9
1,033,413	-				+1.3
1,033,557	+		PP_0891	0.30	-1.1
1,033,771	+		PP_0891	0.67	+0.7
1,033,771	+		PP_0891	0.67	-0.1
1,033,771	+		PP_0891	0.67	+0.4
1,033,772	-		PP_0891	0.67	+0.1
1,033,772	-		PP_0891	0.67	+0.6
1,033,772	-		PP_0891	0.67	+0.2
1,033,772	-		PP_0891	0.67	-0.0
1,034,090	+		PP_0892	0.11	+1.1
1,034,090	+		PP_0892	0.11	+0.1
1,034,090	+		PP_0892	0.11	+0.0
1,034,090	+		PP_0892	0.11	+0.7
1,034,186	+		PP_0892	0.19	+1.4
1,034,186	+		PP_0892	0.19	+1.3
1,034,187	-		PP_0892	0.19	-0.1
1,034,244	-		PP_0892	0.24	+0.2
1,034,255	+		PP_0892	0.25	+0.5
1,034,255	+		PP_0892	0.25	+0.4
1,034,256	-		PP_0892	0.25	+1.3
1,034,257	+		PP_0892	0.25	-0.7
1,034,258	-		PP_0892	0.25	+1.1
1,034,295	-		PP_0892	0.29	+0.1
1,034,574	-		PP_0892	0.53	-0.4
1,034,616	+		PP_0892	0.56	+1.0
1,034,616	+		PP_0892	0.56	+0.4
1,034,617	-		PP_0892	0.56	+1.6
1,034,769	+		PP_0892	0.70	-0.9
1,034,789	+		PP_0892	0.71	+0.9
1,034,790	-		PP_0892	0.71	+0.4
1,034,790	-		PP_0892	0.71	+1.7
1,034,790	-		PP_0892	0.71	+1.2
1,034,790	-		PP_0892	0.71	-0.1
1,034,790	-		PP_0892	0.71	-1.3
1,034,792	+		PP_0892	0.72	+0.3
1,034,793	-		PP_0892	0.72	+0.6
1,034,868	+		PP_0892	0.78	+0.7
1,034,868	+		PP_0892	0.78	+0.6
1,034,869	-		PP_0892	0.78	+1.0
1,035,143	+				-0.4
1,035,144	-				+0.3
1,035,154	-				+0.4
1,035,209	+				-1.6
1,035,210	-				+0.7
1,035,210	-				+0.1
1,035,221	+				-0.3
1,035,383	+		PP_0893	0.37	-0.5
1,035,384	-		PP_0893	0.37	+0.4
1,035,413	+		PP_0893	0.42	-1.3
1,035,414	-		PP_0893	0.43	-1.5
1,035,414	-		PP_0893	0.43	+0.5
1,035,724	+				+0.2
1,035,742	+				-0.2
1,035,743	-				+0.3
1,035,743	-				+0.1
1,035,816	+				+0.2
1,035,816	+				+0.5
1,035,817	-				-0.6
1,035,817	-				-1.2
1,035,819	+				+0.9
1,035,819	+				+1.5
1,035,819	+				+0.0
1,035,819	+				-0.8
1,035,819	+				-1.0
1,035,820	-				+1.7
1,035,820	-				-0.2
1,035,853	+				-1.6
1,035,853	+		PP_0894	0.18	+0.1
1,035,855	+		PP_0894	0.18	+0.5
1,035,855	+		PP_0894	0.18	-0.7
1,035,855	+		PP_0894	0.18	+0.7
1,035,855	+		PP_0894	0.18	-1.4
1,035,856	-		PP_0894	0.19	+1.0
1,035,856	-		PP_0894	0.19	-0.8
1,035,856	-		PP_0894	0.19	+0.4
1,035,856	-		PP_0894	0.19	-0.2
1,035,882	+		PP_0894	0.25	+0.9
1,035,882	+		PP_0894	0.25	+0.9
1,035,882	+		PP_0894	0.25	+1.3
1,035,882	+		PP_0894	0.25	+0.3
1,035,882	+		PP_0894	0.25	+0.6
1,035,882	+		PP_0894	0.25	-0.5
1,035,882	+		PP_0894	0.25	-0.9
1,035,883	-		PP_0894	0.25	-0.8
1,035,883	-		PP_0894	0.25	+2.2
1,035,883	-		PP_0894	0.25	+0.6
1,035,883	-		PP_0894	0.25	-0.9
1,035,928	-		PP_0894	0.37	+0.2
1,035,928	-		PP_0894	0.37	-0.2