Experiment: BC Lignin Sorghum 10 vol% (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0762 and PP_0763 are separated by 293 nucleotides PP_0763 and PP_0765 are separated by 331 nucleotides
PP_0762: PP_0762 - Glycerate dehydrogenase, at 877,213 to 878,178
_0762
PP_0763: PP_0763 - Medium-chain-fatty-acid CoA ligase, at 878,472 to 880,154
_0763
PP_0765: PP_0765 - putative adhesin (DUF1302) <small>(from data)</small>, at 880,486 to 882,372
_0765
Position (kb) 878
879
880
881 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 877.527 kb on + strand, within PP_0762 at 877.528 kb on - strand, within PP_0762 at 877.528 kb on - strand, within PP_0762 at 877.645 kb on + strand, within PP_0762 at 877.646 kb on - strand, within PP_0762 at 877.740 kb on + strand, within PP_0762 at 877.805 kb on + strand, within PP_0762 at 877.806 kb on - strand, within PP_0762 at 877.849 kb on - strand, within PP_0762 at 877.849 kb on - strand at 877.849 kb on - strand, within PP_0762 at 878.332 kb on - strand at 878.332 kb on - strand at 878.368 kb on + strand at 878.368 kb on + strand at 878.368 kb on + strand at 878.368 kb on + strand at 878.368 kb on + strand at 878.368 kb on + strand at 878.369 kb on - strand at 878.369 kb on - strand at 878.369 kb on - strand at 878.369 kb on - strand at 878.369 kb on - strand at 878.369 kb on - strand at 878.369 kb on - strand at 878.369 kb on - strand at 878.369 kb on - strand at 878.429 kb on - strand at 878.512 kb on - strand at 878.512 kb on - strand at 878.518 kb on - strand at 878.583 kb on + strand at 878.607 kb on + strand at 878.607 kb on + strand at 878.608 kb on - strand at 878.608 kb on - strand at 878.856 kb on + strand, within PP_0763 at 878.955 kb on + strand, within PP_0763 at 878.956 kb on - strand, within PP_0763 at 878.956 kb on - strand, within PP_0763 at 878.988 kb on + strand, within PP_0763 at 879.027 kb on - strand, within PP_0763 at 879.027 kb on - strand, within PP_0763 at 879.033 kb on + strand, within PP_0763 at 879.033 kb on + strand, within PP_0763 at 879.034 kb on - strand, within PP_0763 at 879.034 kb on - strand, within PP_0763 at 879.034 kb on - strand, within PP_0763 at 879.129 kb on - strand, within PP_0763 at 879.165 kb on + strand, within PP_0763 at 879.165 kb on + strand, within PP_0763 at 879.165 kb on + strand, within PP_0763 at 879.165 kb on + strand, within PP_0763 at 879.165 kb on + strand, within PP_0763 at 879.165 kb on + strand, within PP_0763 at 879.166 kb on - strand, within PP_0763 at 879.246 kb on + strand, within PP_0763 at 879.246 kb on + strand, within PP_0763 at 879.424 kb on - strand, within PP_0763 at 879.424 kb on - strand, within PP_0763 at 879.465 kb on + strand, within PP_0763 at 879.466 kb on - strand, within PP_0763 at 879.552 kb on + strand, within PP_0763 at 879.552 kb on + strand, within PP_0763 at 879.552 kb on + strand, within PP_0763 at 879.553 kb on - strand, within PP_0763 at 879.553 kb on - strand, within PP_0763 at 879.553 kb on - strand, within PP_0763 at 879.553 kb on - strand, within PP_0763 at 879.557 kb on + strand at 879.558 kb on - strand, within PP_0763 at 879.558 kb on - strand, within PP_0763 at 879.558 kb on - strand, within PP_0763 at 879.656 kb on - strand, within PP_0763 at 879.684 kb on + strand, within PP_0763 at 879.684 kb on + strand, within PP_0763 at 879.685 kb on - strand, within PP_0763 at 879.771 kb on + strand, within PP_0763 at 879.771 kb on + strand, within PP_0763 at 879.957 kb on - strand, within PP_0763 at 880.010 kb on + strand at 880.011 kb on - strand at 880.011 kb on - strand at 880.011 kb on - strand at 880.049 kb on + strand at 880.152 kb on + strand at 880.247 kb on + strand at 880.339 kb on + strand at 880.340 kb on - strand at 880.340 kb on - strand at 880.341 kb on + strand at 880.342 kb on - strand at 880.342 kb on - strand at 880.458 kb on + strand at 880.469 kb on + strand at 880.478 kb on + strand at 880.765 kb on - strand, within PP_0765 at 880.765 kb on - strand, within PP_0765 at 880.765 kb on - strand, within PP_0765 at 880.765 kb on - strand, within PP_0765 at 880.787 kb on - strand, within PP_0765 at 880.787 kb on - strand, within PP_0765 at 880.819 kb on + strand, within PP_0765 at 880.820 kb on - strand, within PP_0765 at 880.820 kb on - strand, within PP_0765 at 880.825 kb on + strand, within PP_0765 at 880.826 kb on - strand, within PP_0765 at 880.826 kb on - strand, within PP_0765 at 880.826 kb on - strand, within PP_0765 at 880.934 kb on - strand, within PP_0765 at 880.942 kb on + strand, within PP_0765 at 880.942 kb on + strand, within PP_0765 at 880.942 kb on + strand, within PP_0765 at 880.942 kb on + strand, within PP_0765 at 880.942 kb on + strand, within PP_0765 at 880.943 kb on - strand, within PP_0765 at 880.943 kb on - strand, within PP_0765 at 880.943 kb on - strand, within PP_0765 at 880.988 kb on + strand, within PP_0765 at 880.989 kb on - strand, within PP_0765 at 881.007 kb on + strand, within PP_0765 at 881.008 kb on - strand, within PP_0765 at 881.008 kb on - strand, within PP_0765 at 881.113 kb on + strand, within PP_0765 at 881.114 kb on - strand, within PP_0765 at 881.114 kb on - strand, within PP_0765
Per-strain Table
Position Strand Gene LocusTag Fraction BC Lignin Sorghum 10 vol% (C) remove 877,527 + PP_0762 0.33 +0.5 877,528 - PP_0762 0.33 -1.1 877,528 - PP_0762 0.33 +0.1 877,645 + PP_0762 0.45 +0.7 877,646 - PP_0762 0.45 -0.3 877,740 + PP_0762 0.55 -0.1 877,805 + PP_0762 0.61 +0.2 877,806 - PP_0762 0.61 +0.0 877,849 - PP_0762 0.66 +1.9 877,849 - +0.7 877,849 - PP_0762 0.66 +1.1 878,332 - -0.5 878,332 - +1.9 878,368 + -1.3 878,368 + -1.5 878,368 + -0.3 878,368 + -0.1 878,368 + +0.2 878,368 + +0.4 878,369 - +0.1 878,369 - -0.9 878,369 - +1.0 878,369 - +0.9 878,369 - -0.2 878,369 - +0.2 878,369 - +0.7 878,369 - -0.1 878,369 - -0.4 878,429 - -0.5 878,512 - -0.3 878,512 - -0.4 878,518 - +0.3 878,583 + -0.3 878,607 + -0.0 878,607 + -0.3 878,608 - +0.1 878,608 - -2.1 878,856 + PP_0763 0.23 -0.0 878,955 + PP_0763 0.29 +0.5 878,956 - PP_0763 0.29 -1.0 878,956 - PP_0763 0.29 -0.7 878,988 + PP_0763 0.31 +0.3 879,027 - PP_0763 0.33 +0.2 879,027 - PP_0763 0.33 -0.4 879,033 + PP_0763 0.33 -1.6 879,033 + PP_0763 0.33 +0.6 879,034 - PP_0763 0.33 +0.2 879,034 - PP_0763 0.33 +0.5 879,034 - PP_0763 0.33 -3.5 879,129 - PP_0763 0.39 -1.5 879,165 + PP_0763 0.41 +0.0 879,165 + PP_0763 0.41 -0.5 879,165 + PP_0763 0.41 -1.1 879,165 + PP_0763 0.41 +1.0 879,165 + PP_0763 0.41 -0.2 879,165 + PP_0763 0.41 +0.6 879,166 - PP_0763 0.41 +0.2 879,246 + PP_0763 0.46 +0.2 879,246 + PP_0763 0.46 -1.6 879,424 - PP_0763 0.57 +0.6 879,424 - PP_0763 0.57 -0.1 879,465 + PP_0763 0.59 +0.8 879,466 - PP_0763 0.59 +0.8 879,552 + PP_0763 0.64 +0.2 879,552 + PP_0763 0.64 -0.6 879,552 + PP_0763 0.64 -1.1 879,553 - PP_0763 0.64 -0.6 879,553 - PP_0763 0.64 -0.8 879,553 - PP_0763 0.64 +0.2 879,553 - PP_0763 0.64 -1.2 879,557 + +2.3 879,558 - PP_0763 0.65 -0.3 879,558 - PP_0763 0.65 +0.5 879,558 - PP_0763 0.65 -1.5 879,656 - PP_0763 0.70 +0.3 879,684 + PP_0763 0.72 -1.7 879,684 + PP_0763 0.72 +0.2 879,685 - PP_0763 0.72 -3.1 879,771 + PP_0763 0.77 +0.4 879,771 + PP_0763 0.77 +1.4 879,957 - PP_0763 0.88 -1.3 880,010 + -0.1 880,011 - +0.0 880,011 - -0.6 880,011 - -1.3 880,049 + -0.7 880,152 + -0.2 880,247 + +0.4 880,339 + +1.0 880,340 - -2.5 880,340 - -0.3 880,341 + +0.5 880,342 - -2.0 880,342 - -1.2 880,458 + -0.3 880,469 + +0.8 880,478 + +0.3 880,765 - PP_0765 0.15 -0.9 880,765 - PP_0765 0.15 +0.7 880,765 - PP_0765 0.15 -1.1 880,765 - PP_0765 0.15 -0.2 880,787 - PP_0765 0.16 +0.5 880,787 - PP_0765 0.16 -0.4 880,819 + PP_0765 0.18 -0.3 880,820 - PP_0765 0.18 +0.1 880,820 - PP_0765 0.18 -0.1 880,825 + PP_0765 0.18 +0.6 880,826 - PP_0765 0.18 -0.4 880,826 - PP_0765 0.18 -1.3 880,826 - PP_0765 0.18 -2.7 880,934 - PP_0765 0.24 -0.3 880,942 + PP_0765 0.24 +2.7 880,942 + PP_0765 0.24 -0.5 880,942 + PP_0765 0.24 -1.0 880,942 + PP_0765 0.24 +0.5 880,942 + PP_0765 0.24 -0.7 880,943 - PP_0765 0.24 -0.3 880,943 - PP_0765 0.24 -3.0 880,943 - PP_0765 0.24 -1.0 880,988 + PP_0765 0.27 +0.3 880,989 - PP_0765 0.27 +0.6 881,007 + PP_0765 0.28 +1.5 881,008 - PP_0765 0.28 -0.3 881,008 - PP_0765 0.28 -0.1 881,113 + PP_0765 0.33 -0.1 881,114 - PP_0765 0.33 -0.5 881,114 - PP_0765 0.33 -1.4
Or see this region's nucleotide sequence