Strain Fitness in Pseudomonas putida KT2440 around PP_0742

Experiment: BC Lignin Sorghum 10 vol% (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0741 and PP_0742 are separated by 103 nucleotidesPP_0742 and PP_0743 are separated by 186 nucleotides PP_0741: PP_0741 - conserved protein of unknown function, at 859,703 to 860,671 _0741 PP_0742: PP_0742 - conserved exported protein of unknown function, at 860,775 to 861,761 _0742 PP_0743: PP_0743 - conserved protein with NAD(P)-binding Rossmann-fold domain, at 861,948 to 862,853 _0743 Position (kb) 860 861 862Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 859.817 kb on + strand, within PP_0741at 859.817 kb on + strand, within PP_0741at 859.818 kb on - strand, within PP_0741at 859.927 kb on + strand, within PP_0741at 859.928 kb on - strand, within PP_0741at 860.082 kb on + strand, within PP_0741at 860.082 kb on + strand, within PP_0741at 860.083 kb on - strand, within PP_0741at 860.088 kb on + strand, within PP_0741at 860.089 kb on - strand, within PP_0741at 860.158 kb on - strand, within PP_0741at 860.174 kb on + strand, within PP_0741at 860.174 kb on + strand, within PP_0741at 860.222 kb on + strand, within PP_0741at 860.222 kb on + strand, within PP_0741at 860.222 kb on + strand, within PP_0741at 860.223 kb on - strand, within PP_0741at 860.262 kb on + strand, within PP_0741at 860.263 kb on - strand, within PP_0741at 860.263 kb on - strand, within PP_0741at 860.263 kb on - strand, within PP_0741at 860.401 kb on - strand, within PP_0741at 860.401 kb on - strand, within PP_0741at 860.401 kb on - strand, within PP_0741at 860.599 kb on - strandat 860.744 kb on - strandat 860.753 kb on - strandat 860.763 kb on + strandat 860.765 kb on + strandat 860.766 kb on - strandat 860.766 kb on - strandat 860.766 kb on - strandat 860.869 kb on + strandat 860.869 kb on + strandat 860.870 kb on - strandat 860.870 kb on - strandat 860.870 kb on - strandat 860.870 kb on - strandat 860.870 kb on - strandat 860.916 kb on - strand, within PP_0742at 860.929 kb on + strand, within PP_0742at 860.930 kb on - strand, within PP_0742at 860.930 kb on - strand, within PP_0742at 860.930 kb on - strand, within PP_0742at 861.170 kb on + strand, within PP_0742at 861.209 kb on + strand, within PP_0742at 861.210 kb on - strand, within PP_0742at 861.210 kb on - strand, within PP_0742at 861.310 kb on + strand, within PP_0742at 861.353 kb on - strand, within PP_0742at 861.482 kb on + strand, within PP_0742at 861.482 kb on + strand, within PP_0742at 861.482 kb on + strand, within PP_0742at 861.482 kb on + strand, within PP_0742at 861.482 kb on + strand, within PP_0742at 861.482 kb on + strand, within PP_0742at 861.483 kb on - strand, within PP_0742at 861.483 kb on - strand, within PP_0742at 861.500 kb on - strand, within PP_0742at 861.500 kb on - strand, within PP_0742at 861.505 kb on + strand, within PP_0742at 861.505 kb on + strand, within PP_0742at 861.506 kb on - strand, within PP_0742at 861.506 kb on - strand, within PP_0742at 861.506 kb on - strand, within PP_0742at 861.506 kb on - strand, within PP_0742at 861.506 kb on - strand, within PP_0742at 861.506 kb on - strand, within PP_0742at 861.592 kb on + strand, within PP_0742at 861.593 kb on - strand, within PP_0742at 861.750 kb on - strandat 861.753 kb on + strandat 861.753 kb on + strandat 861.754 kb on - strandat 861.754 kb on - strandat 861.754 kb on - strandat 861.794 kb on + strandat 861.795 kb on - strandat 861.795 kb on - strandat 861.795 kb on - strandat 861.814 kb on + strandat 861.815 kb on - strandat 861.829 kb on - strandat 861.834 kb on + strandat 861.834 kb on + strandat 861.834 kb on + strandat 861.835 kb on - strandat 861.835 kb on - strandat 861.835 kb on - strandat 861.866 kb on + strandat 861.866 kb on + strandat 861.867 kb on - strandat 861.867 kb on - strandat 861.909 kb on + strandat 861.916 kb on - strandat 861.953 kb on + strandat 861.953 kb on + strandat 861.953 kb on + strandat 861.953 kb on + strandat 861.953 kb on + strandat 861.953 kb on + strandat 861.954 kb on - strandat 861.954 kb on - strandat 861.954 kb on - strandat 861.954 kb on - strandat 861.954 kb on - strandat 861.954 kb on - strandat 861.954 kb on - strandat 861.954 kb on - strandat 861.954 kb on - strandat 861.954 kb on - strandat 861.954 kb on - strandat 861.954 kb on - strandat 861.954 kb on - strandat 861.955 kb on + strandat 861.955 kb on + strandat 861.955 kb on + strandat 861.955 kb on + strandat 861.955 kb on + strandat 861.955 kb on + strandat 861.955 kb on + strandat 861.955 kb on + strandat 861.955 kb on + strandat 861.956 kb on - strandat 861.956 kb on - strandat 861.956 kb on - strandat 861.956 kb on - strandat 861.956 kb on - strandat 862.108 kb on + strand, within PP_0743at 862.108 kb on + strand, within PP_0743at 862.109 kb on - strand, within PP_0743at 862.109 kb on - strandat 862.109 kb on - strand, within PP_0743at 862.300 kb on - strand, within PP_0743at 862.373 kb on + strand, within PP_0743at 862.374 kb on - strand, within PP_0743at 862.417 kb on + strand, within PP_0743at 862.417 kb on + strand, within PP_0743at 862.418 kb on - strand, within PP_0743at 862.426 kb on + strand, within PP_0743at 862.427 kb on - strand, within PP_0743at 862.427 kb on - strand, within PP_0743at 862.550 kb on + strand, within PP_0743at 862.551 kb on - strand, within PP_0743at 862.551 kb on - strand, within PP_0743at 862.552 kb on + strand, within PP_0743at 862.553 kb on - strand, within PP_0743at 862.553 kb on - strand, within PP_0743at 862.611 kb on + strand, within PP_0743at 862.612 kb on - strand, within PP_0743at 862.612 kb on - strand, within PP_0743at 862.612 kb on - strand, within PP_0743at 862.612 kb on - strand, within PP_0743at 862.612 kb on - strand, within PP_0743at 862.613 kb on + strand, within PP_0743at 862.613 kb on + strand, within PP_0743

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Per-strain Table

Position Strand Gene LocusTag Fraction BC Lignin Sorghum 10 vol% (C)
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859,817 + PP_0741 0.12 -0.2
859,817 + PP_0741 0.12 +0.2
859,818 - PP_0741 0.12 +0.3
859,927 + PP_0741 0.23 +0.8
859,928 - PP_0741 0.23 -0.1
860,082 + PP_0741 0.39 +2.3
860,082 + PP_0741 0.39 +0.4
860,083 - PP_0741 0.39 +0.7
860,088 + PP_0741 0.40 +0.1
860,089 - PP_0741 0.40 +0.3
860,158 - PP_0741 0.47 +0.5
860,174 + PP_0741 0.49 -0.9
860,174 + PP_0741 0.49 +0.2
860,222 + PP_0741 0.54 +1.0
860,222 + PP_0741 0.54 -0.7
860,222 + PP_0741 0.54 -0.4
860,223 - PP_0741 0.54 -0.0
860,262 + PP_0741 0.58 -0.7
860,263 - PP_0741 0.58 -2.8
860,263 - PP_0741 0.58 -0.3
860,263 - PP_0741 0.58 -0.5
860,401 - PP_0741 0.72 +0.8
860,401 - PP_0741 0.72 -0.2
860,401 - PP_0741 0.72 +2.1
860,599 - +0.2
860,744 - +0.9
860,753 - -0.2
860,763 + +1.1
860,765 + -1.3
860,766 - +0.3
860,766 - -1.2
860,766 - +0.9
860,869 + +0.4
860,869 + -3.0
860,870 - -0.3
860,870 - +0.0
860,870 - +0.0
860,870 - +0.3
860,870 - +1.7
860,916 - PP_0742 0.14 -0.6
860,929 + PP_0742 0.16 -0.4
860,930 - PP_0742 0.16 -0.2
860,930 - PP_0742 0.16 +0.8
860,930 - PP_0742 0.16 -0.8
861,170 + PP_0742 0.40 -1.3
861,209 + PP_0742 0.44 -1.2
861,210 - PP_0742 0.44 +0.1
861,210 - PP_0742 0.44 +1.7
861,310 + PP_0742 0.54 +3.7
861,353 - PP_0742 0.59 +0.2
861,482 + PP_0742 0.72 +0.5
861,482 + PP_0742 0.72 +0.5
861,482 + PP_0742 0.72 +0.7
861,482 + PP_0742 0.72 -1.7
861,482 + PP_0742 0.72 -0.2
861,482 + PP_0742 0.72 +1.5
861,483 - PP_0742 0.72 -0.1
861,483 - PP_0742 0.72 -0.4
861,500 - PP_0742 0.73 +0.0
861,500 - PP_0742 0.73 +1.8
861,505 + PP_0742 0.74 +0.7
861,505 + PP_0742 0.74 -3.3
861,506 - PP_0742 0.74 +1.2
861,506 - PP_0742 0.74 +0.4
861,506 - PP_0742 0.74 -0.6
861,506 - PP_0742 0.74 -0.8
861,506 - PP_0742 0.74 -1.3
861,506 - PP_0742 0.74 +0.0
861,592 + PP_0742 0.83 -0.7
861,593 - PP_0742 0.83 -3.1
861,750 - -0.0
861,753 + +1.0
861,753 + +0.5
861,754 - -0.2
861,754 - +0.5
861,754 - -0.4
861,794 + -1.6
861,795 - +0.1
861,795 - -0.7
861,795 - +1.7
861,814 + +1.2
861,815 - -0.4
861,829 - -1.1
861,834 + -1.6
861,834 + +0.6
861,834 + -1.8
861,835 - +0.4
861,835 - +0.9
861,835 - -0.1
861,866 + +0.9
861,866 + -0.6
861,867 - -0.3
861,867 - -0.7
861,909 + -0.6
861,916 - -0.1
861,953 + -0.5
861,953 + +0.8
861,953 + +1.1
861,953 + -1.8
861,953 + +0.8
861,953 + +0.4
861,954 - +0.9
861,954 - +1.1
861,954 - -0.3
861,954 - -0.3
861,954 - -0.2
861,954 - +0.2
861,954 - +0.5
861,954 - +1.3
861,954 - +0.9
861,954 - +0.5
861,954 - -0.2
861,954 - +1.7
861,954 - +0.3
861,955 + -0.2
861,955 + +0.3
861,955 + +3.0
861,955 + -0.3
861,955 + +1.0
861,955 + +0.5
861,955 + +0.1
861,955 + -0.0
861,955 + +0.7
861,956 - -0.5
861,956 - -0.2
861,956 - +0.7
861,956 - +0.4
861,956 - +0.1
862,108 + PP_0743 0.18 -1.1
862,108 + PP_0743 0.18 +0.3
862,109 - PP_0743 0.18 +1.3
862,109 - +0.2
862,109 - PP_0743 0.18 +0.1
862,300 - PP_0743 0.39 +0.9
862,373 + PP_0743 0.47 +1.0
862,374 - PP_0743 0.47 -0.7
862,417 + PP_0743 0.52 -0.3
862,417 + PP_0743 0.52 +0.3
862,418 - PP_0743 0.52 -0.6
862,426 + PP_0743 0.53 -0.5
862,427 - PP_0743 0.53 +0.8
862,427 - PP_0743 0.53 -0.6
862,550 + PP_0743 0.66 -0.3
862,551 - PP_0743 0.67 -0.2
862,551 - PP_0743 0.67 +0.5
862,552 + PP_0743 0.67 +0.5
862,553 - PP_0743 0.67 +0.0
862,553 - PP_0743 0.67 +0.7
862,611 + PP_0743 0.73 +1.0
862,612 - PP_0743 0.73 -2.8
862,612 - PP_0743 0.73 -2.1
862,612 - PP_0743 0.73 -0.1
862,612 - PP_0743 0.73 +0.3
862,612 - PP_0743 0.73 -1.3
862,613 + PP_0743 0.73 +1.1
862,613 + PP_0743 0.73 -0.1

Or see this region's nucleotide sequence