Strain Fitness in Pseudomonas putida KT2440 around PP_0613

Experiment: BC Lignin Sorghum 10 vol% (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0612 and PP_0613 are separated by 76 nucleotidesPP_0613 and PP_0614 are separated by 1 nucleotides PP_0612: PP_0612 - FAD-dependent glycine/D-amino acid oxidase, at 717,333 to 718,430 _0612 PP_0613: PP_0613 - Amidase family protein, at 718,507 to 719,916 _0613 PP_0614: PP_0614 - putative N-carbamoyl-beta-alanine amidohydrolase/allantoine amidohydrolase 1, at 719,918 to 721,195 _0614 Position (kb) 718 719 720Strain fitness (log2 ratio) -2 -1 0 1 2at 717.543 kb on + strand, within PP_0612at 717.612 kb on + strand, within PP_0612at 717.702 kb on + strand, within PP_0612at 717.702 kb on + strand, within PP_0612at 717.747 kb on + strand, within PP_0612at 717.747 kb on + strand, within PP_0612at 717.747 kb on + strand, within PP_0612at 717.747 kb on + strand, within PP_0612at 717.747 kb on + strand, within PP_0612at 717.747 kb on + strand, within PP_0612at 717.748 kb on - strand, within PP_0612at 717.748 kb on - strand, within PP_0612at 717.748 kb on - strand, within PP_0612at 717.748 kb on - strand, within PP_0612at 717.748 kb on - strand, within PP_0612at 717.748 kb on - strand, within PP_0612at 717.748 kb on - strand, within PP_0612at 717.889 kb on + strand, within PP_0612at 717.889 kb on + strand, within PP_0612at 717.889 kb on + strand, within PP_0612at 717.890 kb on - strand, within PP_0612at 717.965 kb on + strand, within PP_0612at 718.263 kb on + strand, within PP_0612at 718.263 kb on + strand, within PP_0612at 718.263 kb on + strand, within PP_0612at 718.263 kb on + strand, within PP_0612at 718.263 kb on + strand, within PP_0612at 718.263 kb on + strand, within PP_0612at 718.264 kb on - strand, within PP_0612at 718.314 kb on + strand, within PP_0612at 718.404 kb on + strandat 718.404 kb on + strandat 718.458 kb on + strandat 718.459 kb on - strandat 718.459 kb on - strandat 718.459 kb on - strandat 718.515 kb on + strandat 718.516 kb on - strandat 718.556 kb on + strandat 718.557 kb on - strandat 718.557 kb on - strandat 718.688 kb on + strand, within PP_0613at 718.796 kb on + strand, within PP_0613at 718.859 kb on + strand, within PP_0613at 718.859 kb on + strand, within PP_0613at 718.859 kb on + strand, within PP_0613at 718.860 kb on - strand, within PP_0613at 719.026 kb on + strand, within PP_0613at 719.026 kb on + strand, within PP_0613at 719.103 kb on - strand, within PP_0613at 719.131 kb on + strand, within PP_0613at 719.131 kb on + strand, within PP_0613at 719.132 kb on - strand, within PP_0613at 719.132 kb on - strand, within PP_0613at 719.132 kb on - strand, within PP_0613at 719.132 kb on - strand, within PP_0613at 719.132 kb on - strand, within PP_0613at 719.312 kb on + strand, within PP_0613at 719.313 kb on - strand, within PP_0613at 719.313 kb on - strand, within PP_0613at 719.619 kb on + strand, within PP_0613at 719.623 kb on - strand, within PP_0613at 719.861 kb on + strandat 719.861 kb on + strandat 719.862 kb on - strandat 719.862 kb on - strandat 720.108 kb on + strand, within PP_0614at 720.174 kb on + strand, within PP_0614at 720.317 kb on + strand, within PP_0614at 720.318 kb on - strand, within PP_0614at 720.318 kb on - strand, within PP_0614at 720.590 kb on - strand, within PP_0614at 720.604 kb on - strand, within PP_0614at 720.646 kb on - strand, within PP_0614at 720.788 kb on + strand, within PP_0614at 720.788 kb on + strand, within PP_0614

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Per-strain Table

Position Strand Gene LocusTag Fraction BC Lignin Sorghum 10 vol% (C)
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717,543 + PP_0612 0.19 +0.0
717,612 + PP_0612 0.25 -0.8
717,702 + PP_0612 0.34 -0.2
717,702 + PP_0612 0.34 -1.2
717,747 + PP_0612 0.38 +1.3
717,747 + PP_0612 0.38 +0.0
717,747 + PP_0612 0.38 +0.2
717,747 + PP_0612 0.38 -1.6
717,747 + PP_0612 0.38 +0.3
717,747 + PP_0612 0.38 -1.6
717,748 - PP_0612 0.38 +0.2
717,748 - PP_0612 0.38 -0.3
717,748 - PP_0612 0.38 -1.2
717,748 - PP_0612 0.38 -0.2
717,748 - PP_0612 0.38 +0.5
717,748 - PP_0612 0.38 -2.1
717,748 - PP_0612 0.38 -0.6
717,889 + PP_0612 0.51 +0.3
717,889 + PP_0612 0.51 +0.6
717,889 + PP_0612 0.51 +0.5
717,890 - PP_0612 0.51 +0.4
717,965 + PP_0612 0.58 -0.1
718,263 + PP_0612 0.85 +0.7
718,263 + PP_0612 0.85 +1.4
718,263 + PP_0612 0.85 -0.4
718,263 + PP_0612 0.85 -0.1
718,263 + PP_0612 0.85 +0.8
718,263 + PP_0612 0.85 -0.0
718,264 - PP_0612 0.85 -0.5
718,314 + PP_0612 0.89 +0.0
718,404 + -0.3
718,404 + -1.3
718,458 + +0.8
718,459 - -0.0
718,459 - -0.7
718,459 - -0.1
718,515 + +0.1
718,516 - -0.4
718,556 + +0.6
718,557 - +0.3
718,557 - +1.0
718,688 + PP_0613 0.13 +0.1
718,796 + PP_0613 0.20 +0.5
718,859 + PP_0613 0.25 -1.2
718,859 + PP_0613 0.25 +0.2
718,859 + PP_0613 0.25 -1.0
718,860 - PP_0613 0.25 -0.8
719,026 + PP_0613 0.37 +0.1
719,026 + PP_0613 0.37 +0.1
719,103 - PP_0613 0.42 -1.1
719,131 + PP_0613 0.44 -0.7
719,131 + PP_0613 0.44 -1.2
719,132 - PP_0613 0.44 -0.3
719,132 - PP_0613 0.44 -1.1
719,132 - PP_0613 0.44 +1.2
719,132 - PP_0613 0.44 +0.8
719,132 - PP_0613 0.44 -1.0
719,312 + PP_0613 0.57 -0.9
719,313 - PP_0613 0.57 -0.7
719,313 - PP_0613 0.57 -2.6
719,619 + PP_0613 0.79 +0.1
719,623 - PP_0613 0.79 +0.6
719,861 + -0.9
719,861 + +0.9
719,862 - -0.1
719,862 - -0.7
720,108 + PP_0614 0.15 -0.2
720,174 + PP_0614 0.20 +0.5
720,317 + PP_0614 0.31 +0.7
720,318 - PP_0614 0.31 -0.2
720,318 - PP_0614 0.31 +0.1
720,590 - PP_0614 0.53 -0.9
720,604 - PP_0614 0.54 -0.1
720,646 - PP_0614 0.57 +1.8
720,788 + PP_0614 0.68 -0.9
720,788 + PP_0614 0.68 +0.5

Or see this region's nucleotide sequence