Strain Fitness in Pseudomonas putida KT2440 around PP_0590

Experiment: BC Lignin Sorghum 10 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BC Lignin Sorghum 10 vol% (C)
687,980	-		PP_0589	0.71	+0.7
687,980	-		PP_0589	0.71	+1.0
688,065	+		PP_0589	0.79	-2.7
688,065	+		PP_0589	0.79	-0.6
688,175	+		PP_0589	0.88	+0.2
688,176	-		PP_0589	0.88	-4.3
688,176	-		PP_0589	0.88	-1.4
688,206	-				-0.7
688,206	-				-1.1
688,451	+		PP_5446	0.70	+0.0
688,452	-		PP_5446	0.71	-0.3
688,452	-		PP_5446	0.71	+0.8
688,473	+		PP_5446	0.83	-2.0
688,473	+		PP_5446	0.83	+0.6
688,473	+		PP_5446	0.83	+1.2
688,473	+		PP_5446	0.83	+0.5
688,473	+		PP_5446	0.83	-0.4
688,473	+		PP_5446	0.83	+0.2
688,474	-		PP_5446	0.83	-0.7
688,474	-		PP_5446	0.83	+0.4
688,474	-		PP_5446	0.83	-0.7
688,502	+				-0.1
688,502	+				-1.1
688,503	-				+0.2
688,503	-				+0.1
688,555	+				+0.5
688,555	+				+1.7
688,555	+				+0.2
688,555	+				+0.4
688,587	-				-0.6
688,639	-				+1.5
688,793	+				+0.3
688,793	+				-1.9
688,793	+				+1.1
688,793	+				+1.7
688,817	+				-1.9
688,817	+				+0.6
688,818	-				-0.9
688,859	+				+0.2
688,860	-				-0.0
688,860	-				+0.9
688,860	-				-2.6
688,861	+				+2.0
688,946	+				+0.3
688,946	+				-0.3
688,946	+				-1.3
688,946	+				-1.1
688,946	+				+0.1
688,947	-				-0.6
688,948	+				-0.6
688,948	+				-0.7
688,948	+				-0.3
688,948	+				+0.7
688,948	+				+0.0
688,948	+				+1.3
688,949	-				+1.0
688,949	-				-1.5
688,949	-				-0.2
688,949	-				-0.4
688,949	-				+0.9
688,949	-				+0.0
688,949	-				-1.6
688,949	-				+0.1
688,972	+				+0.6
688,972	+				+0.4
688,972	+				+0.3
688,973	-				-1.9
688,973	-				+0.9
688,973	-				+1.5
689,071	-		PP_0590	0.16	+0.3
689,165	+		PP_0590	0.29	+0.8
689,165	+		PP_0590	0.29	-0.9
689,165	+		PP_0590	0.29	+1.5
689,166	-		PP_0590	0.30	+0.4
689,202	+		PP_0590	0.35	+0.2
689,220	+		PP_0590	0.37	+0.5
689,220	+		PP_0590	0.37	-2.6
689,221	-		PP_0590	0.37	+1.3
689,242	+		PP_0590	0.40	+1.1
689,339	+		PP_0590	0.54	+0.3
689,340	-		PP_0590	0.54	+0.2
689,340	-		PP_0590	0.54	+0.0
689,340	-		PP_0590	0.54	-0.9
689,435	+		PP_0590	0.67	+0.7
689,435	+		PP_0590	0.67	+1.6
689,435	+		PP_0590	0.67	+1.1
689,436	-		PP_0590	0.67	+0.8
689,602	+				-0.5
689,602	+				-0.4
689,602	+				-2.9
689,603	-				-0.3
689,603	-				-0.1
689,603	-				+0.4
689,603	-				-0.5
689,637	+				+0.9
689,686	+				-0.1
689,686	+				+0.0
689,687	-				+0.4
689,761	-				-0.6
689,790	-		PP_0591	0.11	+0.9
689,874	+		PP_0591	0.20	-1.0
689,991	+		PP_0591	0.32	-0.2
689,991	+		PP_0591	0.32	-0.9
689,991	+		PP_0591	0.32	+0.8
689,992	-		PP_0591	0.32	+0.7
690,030	-		PP_0591	0.36	+0.3
690,396	-		PP_0591	0.75	-0.7
690,414	-		PP_0591	0.76	+0.2
690,414	-		PP_0591	0.76	+0.1
690,414	-		PP_0591	0.76	+0.4
690,453	-		PP_0591	0.81	+0.2
690,455	+		PP_0591	0.81	-0.4
690,491	+		PP_0591	0.85	+0.9
690,491	+				+0.5
690,492	-		PP_0591	0.85	+0.8
690,632	+				+0.7
690,632	+				-0.9
690,632	+				+0.0
690,632	+				+0.1
690,632	+				+0.2
690,632	+				-0.9
690,632	+				-0.0
690,632	+				+1.0
690,632	+				+0.1
690,632	+				-1.8
690,632	+				+0.8
690,632	+				-0.4
690,633	-				+0.3
690,633	-				-0.4
690,633	-				-0.2
690,633	-				+0.9
690,633	-				-0.3
690,633	-				+0.8
690,633	-				+1.2
690,633	-				+1.5
690,633	-				-0.1
690,633	-				+0.4
690,633	-				+2.1
690,633	-				+1.0
690,633	-				-1.8
690,636	+				-0.0
690,637	-				+1.0