Strain Fitness in Pseudomonas putida KT2440 around PP_0153

Experiment: BC Lignin Sorghum 10 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BC Lignin Sorghum 10 vol% (C)
160,808	+		PP_0151	0.22	-1.5
160,809	-		PP_0151	0.23	-0.1
160,894	+		PP_0151	0.52	+0.8
160,894	+		PP_0151	0.52	+0.7
160,894	+		PP_0151	0.52	-1.0
160,941	+		PP_0151	0.68	-2.0
160,942	-		PP_0151	0.68	+0.9
161,029	-				-0.1
161,351	-		PP_0152	0.59	-2.4
161,433	+		PP_0152	0.81	+1.2
161,434	-		PP_0152	0.81	+0.4
161,481	-				-0.7
161,529	+				-0.4
161,568	+				-0.2
161,858	+		PP_0153	0.50	-1.8
161,858	+		PP_0153	0.50	-0.8
161,859	-		PP_0153	0.50	-0.9
161,957	+				-0.4
161,958	-				+0.4
161,958	-				-0.5
161,997	+				-2.8
161,998	-				-0.8
162,001	+				-0.5
162,001	+				+0.5
162,002	-				-0.2
162,049	-				-0.0
162,052	+				-1.5
162,053	-				-0.1
162,082	+				+0.9
162,207	-				+2.4
162,241	-				+0.9
162,246	+				+0.3
162,246	+				-0.1
162,246	+				-0.6
162,247	-				-0.2
162,264	-				+0.2
162,447	-				+1.6
162,468	-				+0.2
162,747	-		PP_0154	0.27	-0.2
162,751	-		PP_0154	0.28	-0.1
162,751	-		PP_0154	0.28	+1.2
162,751	-		PP_0154	0.28	+0.2
162,774	+		PP_0154	0.29	+0.2
162,796	+		PP_0154	0.31	+0.8
162,797	-		PP_0154	0.31	-0.8
162,797	-		PP_0154	0.31	-1.4
162,851	+		PP_0154	0.34	+0.6
162,852	-		PP_0154	0.34	+0.7
162,852	-		PP_0154	0.34	+1.4
162,852	-		PP_0154	0.34	-0.8
162,924	+		PP_0154	0.39	+2.0
162,925	-		PP_0154	0.39	+1.2
162,925	-		PP_0154	0.39	+0.2
162,925	-		PP_0154	0.39	-0.9
162,925	-		PP_0154	0.39	-3.4
162,925	-		PP_0154	0.39	+0.2
162,925	-		PP_0154	0.39	-0.6
162,925	-		PP_0154	0.39	-0.6