Strain Fitness in Pseudomonas putida KT2440 around PP_4840

Experiment: BC Lignin Sorghum 20 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BC Lignin Sorghum 20 vol% (C)
5,505,828	+		PP_4839	0.48	-0.5
5,505,829	-		PP_4839	0.48	+0.0
5,505,829	-		PP_4839	0.48	+0.9
5,506,080	+		PP_4839	0.66	+0.7
5,506,081	-		PP_4839	0.66	+0.7
5,506,176	+		PP_4839	0.73	-0.4
5,506,176	+		PP_4839	0.73	+0.2
5,506,176	+		PP_4839	0.73	-0.9
5,506,176	+				-0.3
5,506,176	+		PP_4839	0.73	-0.3
5,506,177	-		PP_4839	0.73	+0.4
5,506,177	-		PP_4839	0.73	+0.1
5,506,215	+		PP_4839	0.76	-0.9
5,506,215	+		PP_4839	0.76	+0.2
5,506,215	+		PP_4839	0.76	+0.1
5,506,499	+				-1.0
5,506,500	-				-1.7
5,506,500	-				-0.9
5,506,500	-				+0.3
5,506,588	-				+0.3
5,506,604	+				-0.3
5,506,605	-				-0.5
5,506,634	+				-0.2
5,506,702	-				+0.3
5,506,707	-				-1.0
5,506,739	+				+0.3
5,506,739	+				-0.2
5,506,740	-				-2.4
5,506,740	-				+0.2
5,506,740	-				-0.6
5,506,740	-				+0.3
5,506,974	+		PP_4840	0.17	+0.9
5,506,974	+		PP_4840	0.17	+1.1
5,506,975	-		PP_4840	0.17	-0.0
5,507,026	-		PP_4840	0.20	-0.7
5,507,030	+		PP_4840	0.21	+0.1
5,507,031	-		PP_4840	0.21	+0.6
5,507,044	-		PP_4840	0.22	+1.0
5,507,152	+		PP_4840	0.29	+0.4
5,507,152	+		PP_4840	0.29	-0.1
5,507,265	+		PP_4840	0.37	+0.1
5,507,265	+		PP_4840	0.37	-0.2
5,507,266	-		PP_4840	0.37	-0.0
5,507,266	-		PP_4840	0.37	+0.9
5,507,266	-		PP_4840	0.37	+0.5
5,507,266	-		PP_4840	0.37	+0.3
5,507,420	+		PP_4840	0.48	+1.1
5,507,421	-		PP_4840	0.48	+0.3
5,507,490	-		PP_4840	0.53	+0.4
5,507,502	+		PP_4840	0.54	+1.4
5,507,503	-		PP_4840	0.54	-0.2
5,507,503	-		PP_4840	0.54	-0.7
5,507,503	-		PP_4840	0.54	+1.3
5,507,691	+		PP_4840	0.68	+0.7
5,507,691	+		PP_4840	0.68	+0.8
5,507,811	+		PP_4840	0.76	+0.1
5,507,811	+		PP_4840	0.76	+0.3
5,507,812	-		PP_4840	0.76	-0.8
5,507,904	+		PP_4840	0.83	+0.1
5,507,905	-		PP_4840	0.83	+0.3
5,507,905	-		PP_4840	0.83	-0.7
5,507,913	+		PP_4840	0.83	+0.5
5,507,914	-		PP_4840	0.83	+1.0
5,507,952	+		PP_4840	0.86	-0.2
5,507,953	-		PP_4840	0.86	+0.1
5,507,982	+		PP_4840	0.88	-1.9
5,507,982	+		PP_4840	0.88	-0.6
5,507,982	+		PP_4840	0.88	-0.5
5,507,982	+		PP_4840	0.88	-1.2
5,507,983	-		PP_4840	0.88	-0.4
5,508,093	+				-1.3
5,508,094	-				+0.4
5,508,094	-				+0.4
5,508,103	+				-0.6
5,508,182	-				-0.8
5,508,316	+				-0.7
5,508,316	+				+1.0
5,508,329	+				+0.7
5,508,786	+		PP_4841	0.31	-0.1
5,508,787	-		PP_4841	0.31	-0.3
5,508,819	+		PP_4841	0.33	-0.4
5,508,819	+		PP_4841	0.33	+0.2
5,508,819	+		PP_4841	0.33	-1.0
5,508,819	+		PP_4841	0.33	+0.1
5,508,864	+		PP_4841	0.37	+0.2
5,508,864	+		PP_4841	0.37	+0.5
5,508,864	+		PP_4841	0.37	-0.9
5,508,864	+		PP_4841	0.37	-0.4
5,508,865	-		PP_4841	0.37	-0.1
5,508,921	+		PP_4841	0.41	-1.0
5,508,921	+		PP_4841	0.41	+0.3
5,508,922	-		PP_4841	0.42	+0.8
5,508,922	-		PP_4841	0.42	+1.5
5,508,927	+		PP_4841	0.42	+0.1
5,509,005	+		PP_4841	0.48	+0.1
5,509,005	+		PP_4841	0.48	-0.2
5,509,006	-		PP_4841	0.48	-0.3
5,509,122	+		PP_4841	0.57	-0.1
5,509,122	+		PP_4841	0.57	-0.5